Rorug06G0377600

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
52396884 .. 52401742
4859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0377600.1

Sequence Viewer

Length: 624 bp
ATGGGGAGGGGTAAGATTGAGATTAGGAGGATTGAGAACTCAACCAACAGGCAGGTGACCTTTGCTAAGAGAAAGAATGGGATCATCAAGAAGGCTAAGGAAATCACTGTTCTTTGTGATGCCAAGGTTTCTCTTATTATTAATGCTAGCTCTGGGAAAATGGTCGAGTACAACAGCGGCTCTCCAGAAACGTTGCTGGAAATCTTAGATAGATACCATTCACAGACTGGGAAGAAGTTGTGGGATGCCAAGCATGAGAACCTCTCCAATGAACTGGATAGAATCAAGAAAGAAAATGACGGCATGCAAGTCCAGCTCAGGCATTTGAAGGGGGAGGACATAACATCTTTGAACCACAGCGAGCTGGGGAACTTGGAGGAAGCACTTGAGAATGGCCTTACTAGTGTCAGAGGCAAGAAGTCAGATATCGTCCAGATGCAAAGAGACAGTCACAAAGCTGCGGAGGAAGAGCATGATCGCCTCAATTATGAGCTGCACAAACAGACCGTAAAATCTGAAGAGAACTTGAGGGACATGGAGTATCATCAGAGGATGTCCCAGATGTCTTTCTTCCGAGTCCAGCCTATTCAGCCTAATCTCCACGACGACCATGATAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

24.02

Weight (kDa)

6.81

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 6.1e-20 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 82 - 168 3.1e-17 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AciI CCGC 2 cut(s) 177, 461
AclI AACGTT 1 cut(s) 191
AclWI GGATC 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 328, 352
AhlI ACTAGT 1 cut(s) 401
AluBI AGCT 5 cut(s) 150, 316, 364, 458, 493
AluI AGCT 5 cut(s) 150, 316, 364, 458, 493
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 458, 493
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
AseI ATTAAT 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 67
AsuNHI GCTAGC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 445, 480
BceAI ACGGC 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 438
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 147, 402
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 178, 459, 494
BlsI GCNGC 3 cut(s) 179, 460, 495
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 109, 235, 426
BmtI GCTAGC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 2 cut(s) 96, 317
BpuEI CTTGAG 2 cut(s) 407, 547
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 232, 279
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 250, 558
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 2 cut(s) 232, 279
BseXI GCAGC 2 cut(s) 445, 480
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 479
BshFI GGCC 1 cut(s) 396
BslFI GGGAC 2 cut(s) 541, 545
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 541, 545
BsnI GGCC 1 cut(s) 396
Bsp143I GATC 2 cut(s) 81, 475
BspACI CCGC 2 cut(s) 177, 461
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 43
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 462
BsrI ACTGG 2 cut(s) 232, 279
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 81, 475
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 3 cut(s) 109, 449, 508
Bst6I CTCTTC 2 cut(s) 462, 513
BstC8I GCNNGC 3 cut(s) 148, 305, 362
BstDEI CTNAG 4 cut(s) 66, 96, 205, 317
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 2 cut(s) 250, 558
BstKTI GATC 2 cut(s) 84, 478
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 2 cut(s) 81, 475
BstMWI GCNNNNNNNGC 2 cut(s) 313, 589
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 445, 480
BstXI CCANNNNNNTGG 1 cut(s) 274
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 2 cut(s) 250, 558
BtsIMutI CAGTG 1 cut(s) 105
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 148, 305, 362
Csp6I GTAC 1 cut(s) 169
CviAII CATG 5 cut(s) 254, 304, 473, 535, 611
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 4 cut(s) 66, 96, 205, 317
DpnI GATC 2 cut(s) 83, 477
DpnII GATC 2 cut(s) 81, 475
Eam1104I CTCTTC 2 cut(s) 462, 513
EarI CTCTTC 2 cut(s) 462, 513
Eco130I CCWWGG 1 cut(s) 123
Eco32I GATATC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 537
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 5 cut(s) 257, 307, 476, 538, 614
FaiI YATR 7 cut(s) 255, 305, 341, 474, 489, 536, 612
FaqI GGGAC 2 cut(s) 541, 545
FatI CATG 5 cut(s) 253, 303, 472, 534, 610
Fnu4HI GCNGC 3 cut(s) 178, 459, 494
FokI GGATG 2 cut(s) 257, 565
Fsp4HI GCNGC 3 cut(s) 178, 459, 494
FspBI CTAG 2 cut(s) 147, 402
GluI GCNGC 3 cut(s) 178, 459, 494
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 396
Hin1II CATG 5 cut(s) 257, 307, 476, 538, 614
HinfI GANTC 2 cut(s) 282, 576
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 5 cut(s) 410, 424, 517, 549, 575
Hpy188III TCNNGA 4 cut(s) 88, 185, 286, 433
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 2 cut(s) 85, 322
HpyCH4III ACNGT 3 cut(s) 109, 449, 508
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 3 cut(s) 307, 439, 496
HpyF10VI GCNNNNNNNGC 2 cut(s) 313, 589
HpyF3I CTNAG 4 cut(s) 66, 96, 205, 317
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 5 cut(s) 257, 307, 476, 538, 614
Kzo9I GATC 2 cut(s) 81, 475
LguI GCTCTTC 1 cut(s) 462
Lsp1109I GCAGC 2 cut(s) 445, 480
LweI GCATC 3 cut(s) 109, 235, 426
MaeI CTAG 2 cut(s) 147, 402
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 55, 449
MalI GATC 2 cut(s) 83, 477
MboI GATC 2 cut(s) 81, 475
MboII GAAGA 4 cut(s) 244, 479, 530, 562
MluCI AATT 1 cut(s) 484
MlyI GAGTC 1 cut(s) 585
MnlI CCTC 9 cut(s) 21, 272, 328, 370, 404, 457, 491, 522, 543
MseI TTAA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 313, 589
NdeII GATC 2 cut(s) 81, 475
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 5 cut(s) 257, 307, 476, 538, 614
NmuCI GTSAC 2 cut(s) 55, 449
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PaqCI CACCTGC 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 3 cut(s) 179, 460, 495
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 141
Psp1406I AACGTT 1 cut(s) 191
PspEI GGTNACC 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 364
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 3 cut(s) 178, 459, 494
Sau3AI GATC 2 cut(s) 81, 475
SchI GAGTC 1 cut(s) 585
SfaNI GCATC 3 cut(s) 109, 235, 426
SmlI CTYRAG 2 cut(s) 386, 526
SmoI CTYRAG 2 cut(s) 386, 526
SpeI ACTAGT 1 cut(s) 401
SphI GCATGC 1 cut(s) 307
Sse9I AATT 1 cut(s) 484
SsiI CCGC 2 cut(s) 177, 461
SspMI CTAG 2 cut(s) 147, 402
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 109, 449, 508
TaiI ACGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 484
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 55, 449
TseI GCWGC 2 cut(s) 458, 493
Tsp45I GTSAC 2 cut(s) 55, 449
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 112
VspI ATTAAT 1 cut(s) 141
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XspI CTAG 2 cut(s) 147, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.