RLG00000021456

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
75587563 .. 75590133
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021456

Sequence Viewer

Length: 1392 bp
ATGACAATTGAGAATATTGCACCAAAGAAGGAGAGGAAGTCAAGAAAGAACAAAGTAATTGTTGATGAAAATGCTCCTTTGTTGCCCAAAAGAGGGGAAGAGGTTGGGTTTGATGAGTTTAATGGAGCCTCCTTTACTGGGGCAGTTTTCAATTTATCAACCACAATCGTTGGTGCTGGAATCATGGCTTTGCCTGCAACCATGAAAGTGTTGGGTCTTGGTCTTGGGATCACCATGATCATATTTATGGCCTTCTTGACTGAGGCTTCAATTGAGCTGATACTCCGGTTCAGCCGAGCCGGAAAGTCTTCTTCTTATGGAAGCCTCATGGGGGATGCCTTTGGAAAATATGGGAAAATTTTGTTGCAGGTAGCTGTGCTAGTCAACAATCTTGGCGTGCTCATTGTGTACATGATTATTATTGGTGACGTGCTTTCGGGGACATCTTCAAATCAAGGGCACCACGCAGGTGTACTTGAAGGATGGTTTGGAGAACATTGGTGGACCGGGCGTACTATTGTTCTTCTTGTAACAACACTTGGAATATTTGCTCCATTGGCAAGCTTTAAGCGAATTGATTCATTGAGCTTCACGTCTGCCTTATCCGTTGCCCTAGCGGTTGTGTTTCTTGTTATTACCGTTGGAATTACAGTTGTCAAGTTGATTGATGGAAGTATTGGAATGCCCAGATTGCTACCTGATGTTAGTGATGTTTCATCATTCTTCAAATGCTTCACTGTAGTCCCGGTTCTCGTCACTGCTTACATCTGTCACTACAATGTTCATAGCATCGACAATGAACTTGAAGACTCTACACAGATAAGAGGGGTTGTGCAAACCTCACTTGCTCTGTGCTCATCTGTATACATAATGACAAGCCTTTTTGGATTCCTTCTATTTGGGGATGGAACTCTTGACGATGTGCTTGCCAATTTTGATGCCAACCTTGGCATTCCTTATGGTTCCTTCCTTAATGATGCCGTTCGTGTCAGCTATGCTGCTCACCTTATGCTTGTGTTTCCTGTCGTCTTCTTCCCCTTGCGGCTCAACTTGGATGGCCTTTTCTTTCCCTCTTCAAGGCCTTTGGTTCTCGACAACATGAGATTTGCACTTGTCACAGTTGGGCTGATTGGTATTATCTTCTTGGGTGCAAACTTTATACCCAGCATCTGGGACGCTTTCCAATTCACCGGAGCAACTGCCGCAGTGTGCATCGGGTTCATCTTCCCTGCTGCAATTACACTCAAGGATCGACACAACATAGCAACTAAGAAGGACAAGATCTTGAGTATTGCTATGATTGTCCTTGCTGTATTCTCAAACGTGGTGGCAATATATAGCGATGCCTATGCCTTGTTCAAGAATGCCAACACTCCATCACCGCGTGAATGA

Protein Analysis

464

Amino Acids

50.0

Weight (kDa)

6.66

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 43 - 447 5.7e-55 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 44 - 275 3.2e-09 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 2 cut(s) 358, 458
AccB1I GGYRCC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 1170
AccI GTMKAC 1 cut(s) 864
AccII CGCG 1 cut(s) 1384
AciI CCGC 4 cut(s) 617, 1042, 1203, 1382
AclWI GGATC 2 cut(s) 236, 1257
AcsI RAATTY 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 1385
AfaI GTAC 3 cut(s) 410, 474, 514
AfiI CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1077, 1170
AgsI TTSAA 8 cut(s) 151, 270, 450, 479, 727, 806, 1077, 1360
AjiI CACGTC 2 cut(s) 430, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 5 cut(s) 277, 374, 564, 588, 993
AluI AGCT 5 cut(s) 277, 374, 564, 588, 993
Alw21I GWGCWC 2 cut(s) 402, 857
AlwI GGATC 2 cut(s) 236, 1257
AlwNI CAGNNNCTG 1 cut(s) 1170
AoxI GGCC 3 cut(s) 249, 1057, 1079
ApeKI GCWGC 2 cut(s) 998, 1232
ApoI RAATTY 1 cut(s) 357
Asp700I GAANNNNTTC 2 cut(s) 307, 577
AspS9I GGNCC 1 cut(s) 504
AsuC2I CCSGG 2 cut(s) 508, 746
AsuHPI GGTGA 5 cut(s) 223, 437, 995, 1180, 1371
AvaII GGWCC 1 cut(s) 504
BaeGI GKGCMC 1 cut(s) 462
BaeI ACNNNNGTAYC 2 cut(s) 272, 305
BanI GGYRCC 1 cut(s) 459
BbsI GAAGAC 3 cut(s) 300, 813, 1021
Bbv12I GWGCWC 2 cut(s) 402, 857
BbvI GCAGC 2 cut(s) 985, 1219
BccI CCATC 5 cut(s) 477, 662, 899, 1049, 1384
BceAI ACGGC 1 cut(s) 965
BcgI CGANNNNNNTGC 4 cut(s) 908, 942, 1331, 1365
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 2 cut(s) 508, 746
BfaI CTAG 2 cut(s) 380, 614
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 2 cut(s) 358, 458
BglII AGATCT 1 cut(s) 1281
BisI GCNGC 4 cut(s) 999, 1043, 1203, 1233
BlsI GCNGC 4 cut(s) 1000, 1044, 1204, 1234
Bme1390I CCNGG 2 cut(s) 508, 746
Bme18I GGWCC 1 cut(s) 504
BmgBI CACGTC 2 cut(s) 430, 594
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 3 cut(s) 127, 461, 964
BmrFI CCNGG 2 cut(s) 508, 746
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 7 cut(s) 325, 798, 928, 967, 1176, 1221, 1333
BmuI ACTGGG 1 cut(s) 147
BpiI GAAGAC 3 cut(s) 300, 813, 1021
BpuEI CTTGAG 2 cut(s) 1229, 1306
BpuMI CCSGG 2 cut(s) 508, 746
BsaJI CCNNGG 1 cut(s) 946
BsaWI WCCGGW 2 cut(s) 285, 1190
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1077, 1170
Bse1I ACTGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 946
BseGI GGATG 4 cut(s) 340, 488, 910, 1060
BseLI CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1077, 1170
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 2 cut(s) 985, 1219
BseYI CCCAGC 1 cut(s) 1163
Bsh1236I CGCG 1 cut(s) 1384
BshFI GGCC 3 cut(s) 251, 1059, 1081
BshNI GGYRCC 1 cut(s) 459
BsiHKAI GWGCWC 2 cut(s) 402, 857
BsiSI CCGG 5 cut(s) 286, 300, 507, 746, 1191
BslFI GGGAC 3 cut(s) 454, 728, 1187
BslI CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1077, 1170
BsmFI GGGAC 3 cut(s) 454, 728, 1187
BsmI GAATGC 3 cut(s) 687, 951, 1369
BsnI GGCC 3 cut(s) 251, 1059, 1081
Bsp1286I GDGCHC 3 cut(s) 402, 462, 857
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 4 cut(s) 228, 237, 1249, 1281
BspACI CCGC 4 cut(s) 617, 1042, 1203, 1382
BspANI GGCC 3 cut(s) 251, 1059, 1081
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 1384
BspLI GGNNCC 3 cut(s) 127, 461, 964
BspMI ACCTGC 2 cut(s) 358, 458
BspPI GGATC 2 cut(s) 236, 1257
BspT107I GGYRCC 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 946
BssMI GATC 4 cut(s) 228, 237, 1249, 1281
BssNAI GTATAC 1 cut(s) 865
BssT1I CCWWGG 1 cut(s) 946
Bst1107I GTATAC 1 cut(s) 865
Bst4CI ACNGT 4 cut(s) 640, 652, 739, 1120
Bst6I CTCTTC 2 cut(s) 93, 1078
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 4 cut(s) 195, 398, 562, 927
BstDEI CTNAG 2 cut(s) 261, 1269
BstENI CCTNNNNNAGG 1 cut(s) 1075
BstF5I GGATG 4 cut(s) 340, 488, 910, 1060
BstFNI CGCG 1 cut(s) 1384
BstKTI GATC 4 cut(s) 231, 240, 1252, 1284
BstMBI GATC 4 cut(s) 228, 237, 1249, 1281
BstMWI GCNNNNNNNGC 4 cut(s) 194, 557, 691, 1202
BstSCI CCNGG 2 cut(s) 506, 744
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 1 cut(s) 1384
BstV1I GCAGC 2 cut(s) 985, 1219
BstV2I GAAGAC 3 cut(s) 300, 813, 1021
BstX2I RGATCY 1 cut(s) 1281
BstYI RGATCY 1 cut(s) 1281
BstZ17I GTATAC 1 cut(s) 865
BsuRI GGCC 3 cut(s) 251, 1059, 1081
BtgZI GCGATG 1 cut(s) 1356
BtrI CACGTC 2 cut(s) 430, 594
BtsCI GGATG 4 cut(s) 340, 488, 910, 1060
BtsI GCAGTG 2 cut(s) 756, 1212
BtsIMutI CAGTG 3 cut(s) 735, 756, 1212
BveI ACCTGC 2 cut(s) 358, 458
Cac8I GCNNGC 4 cut(s) 195, 398, 562, 927
CaiI CAGNNNCTG 1 cut(s) 1170
Cfr13I GGNCC 1 cut(s) 504
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 3 cut(s) 409, 473, 513
CspCI CAANNNNNGTGG 4 cut(s) 151, 186, 1308, 1343
CviAII CATG 6 cut(s) 184, 202, 235, 328, 412, 1099
CviQI GTAC 3 cut(s) 409, 473, 513
DdeI CTNAG 2 cut(s) 261, 1269
DpnI GATC 4 cut(s) 230, 239, 1251, 1283
DpnII GATC 4 cut(s) 228, 237, 1249, 1281
DraIII CACNNNGTG 1 cut(s) 1385
Eam1104I CTCTTC 2 cut(s) 93, 1078
EarI CTCTTC 2 cut(s) 93, 1078
Eco130I CCWWGG 1 cut(s) 946
Eco147I AGGCCT 1 cut(s) 1081
Eco47I GGWCC 1 cut(s) 504
EcoNI CCTNNNNNAGG 1 cut(s) 1075
EcoT14I CCWWGG 1 cut(s) 946
ErhI CCWWGG 1 cut(s) 946
FaeI CATG 6 cut(s) 187, 205, 238, 331, 415, 1102
FaqI GGGAC 3 cut(s) 454, 728, 1187
FatI CATG 6 cut(s) 183, 201, 234, 327, 411, 1098
FbaI TGATCA 1 cut(s) 237
FblI GTMKAC 1 cut(s) 864
Fnu4HI GCNGC 4 cut(s) 999, 1043, 1203, 1233
FokI GGATG 4 cut(s) 347, 495, 917, 1067
Fsp4HI GCNGC 4 cut(s) 999, 1043, 1203, 1233
FspBI CTAG 2 cut(s) 380, 614
GluI GCNGC 4 cut(s) 999, 1043, 1203, 1233
GsaI CCCAGC 1 cut(s) 1167
HaeIII GGCC 3 cut(s) 251, 1059, 1081
HapII CCGG 5 cut(s) 286, 300, 507, 746, 1191
HgaI GACGC 1 cut(s) 1184
Hin1II CATG 6 cut(s) 187, 205, 238, 331, 415, 1102
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 4 cut(s) 180, 578, 809, 888
HpaII CCGG 5 cut(s) 286, 300, 507, 746, 1191
HphI GGTGA 5 cut(s) 223, 437, 995, 1180, 1371
Hpy166II GTNNAC 5 cut(s) 385, 409, 473, 504, 865
Hpy188III TCNNGA 6 cut(s) 42, 256, 914, 1091, 1285, 1360
Hpy8I GTNNAC 5 cut(s) 385, 409, 473, 504, 865
HpyAV CCTTC 6 cut(s) 22, 262, 473, 902, 976, 1267
HpyCH4III ACNGT 4 cut(s) 640, 652, 739, 1120
HpyCH4IV ACGT 3 cut(s) 429, 593, 1323
HpyCH4V TGCA 8 cut(s) 20, 197, 367, 835, 1109, 1151, 1212, 1235
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 557, 691, 1202
HpyF3I CTNAG 2 cut(s) 261, 1269
HpySE526I ACGT 3 cut(s) 429, 593, 1323
Hsp92II CATG 6 cut(s) 187, 205, 238, 331, 415, 1102
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 4 cut(s) 228, 237, 1249, 1281
LmnI GCTCC 4 cut(s) 79, 125, 556, 1193
Lsp1109I GCAGC 2 cut(s) 985, 1219
LweI GCATC 7 cut(s) 325, 798, 928, 967, 1176, 1221, 1333
MaeI CTAG 2 cut(s) 380, 614
MaeII ACGT 3 cut(s) 429, 593, 1323
MaeIII GTNAC 5 cut(s) 425, 529, 754, 770, 1114
MalI GATC 4 cut(s) 230, 239, 1251, 1283
MboI GATC 4 cut(s) 228, 237, 1249, 1281
MfeI CAATTG 2 cut(s) 6, 270
MflI RGATCY 1 cut(s) 1281
MhlI GDGCHC 3 cut(s) 402, 462, 857
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 9 cut(s) 27, 86, 94, 139, 256, 335, 818, 850, 1081
MroXI GAANNNNTTC 2 cut(s) 307, 577
MseI TTAA 3 cut(s) 120, 567, 972
MslI CAYNNNNRTG 4 cut(s) 206, 245, 468, 777
MspI CCGG 5 cut(s) 286, 300, 507, 746, 1191
MspR9I CCNGG 2 cut(s) 508, 746
MunI CAATTG 2 cut(s) 6, 270
Mva1269I GAATGC 3 cut(s) 687, 951, 1369
MvnI CGCG 1 cut(s) 1384
MwoI GCNNNNNNNGC 4 cut(s) 194, 557, 691, 1202
NciI CCSGG 2 cut(s) 508, 746
NdeII GATC 4 cut(s) 228, 237, 1249, 1281
NlaIII CATG 6 cut(s) 187, 205, 238, 331, 415, 1102
NlaIV GGNNCC 3 cut(s) 127, 461, 964
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 4 cut(s) 425, 754, 770, 1114
OliI CACNNNNGTG 1 cut(s) 468
PaqCI CACCTGC 1 cut(s) 458
PceI AGGCCT 1 cut(s) 1081
PctI GAATGC 3 cut(s) 687, 951, 1369
PdmI GAANNNNTTC 2 cut(s) 307, 577
PfeI GAWTC 3 cut(s) 180, 578, 888
PflMI CCANNNNNTGG 1 cut(s) 1170
PkrI GCNGC 4 cut(s) 1000, 1044, 1204, 1234
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
PspFI CCCAGC 1 cut(s) 1163
PspN4I GGNNCC 3 cut(s) 127, 461, 964
PspPI GGNCC 1 cut(s) 504
PsrI GAACNNNNNNTAC 2 cut(s) 732, 764
PstNI CAGNNNCTG 1 cut(s) 1170
PsuI RGATCY 1 cut(s) 1281
RsaI GTAC 3 cut(s) 410, 474, 514
RsaNI GTAC 3 cut(s) 409, 473, 513
RseI CAYNNNNRTG 4 cut(s) 206, 245, 468, 777
SaqAI TTAA 3 cut(s) 120, 567, 972
SatI GCNGC 4 cut(s) 999, 1043, 1203, 1233
Sau3AI GATC 4 cut(s) 228, 237, 1249, 1281
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 2 cut(s) 508, 746
SduI GDGCHC 3 cut(s) 402, 462, 857
SfaNI GCATC 7 cut(s) 325, 798, 928, 967, 1176, 1221, 1333
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 504
SmiMI CAYNNNNRTG 4 cut(s) 206, 245, 468, 777
SmlI CTYRAG 2 cut(s) 1244, 1285
SmoI CTYRAG 2 cut(s) 1244, 1285
SseBI AGGCCT 1 cut(s) 1081
SsiI CCGC 4 cut(s) 617, 1042, 1203, 1382
SspI AATATT 2 cut(s) 16, 546
SspMI CTAG 2 cut(s) 380, 614
StuI AGGCCT 1 cut(s) 1081
StyD4I CCNGG 2 cut(s) 506, 744
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 4 cut(s) 640, 652, 739, 1120
TaiI ACGT 3 cut(s) 432, 596, 1326
TaqI TCGA 3 cut(s) 792, 1092, 1252
TatI WGTACW 2 cut(s) 408, 472
TauI GCSGC 2 cut(s) 1045, 1205
TfiI GAWTC 3 cut(s) 180, 578, 888
Tru1I TTAA 3 cut(s) 120, 567, 972
Tru9I TTAA 3 cut(s) 120, 567, 972
TscAI CASTG 3 cut(s) 742, 763, 1212
TseFI GTSAC 4 cut(s) 425, 754, 770, 1114
TseI GCWGC 2 cut(s) 998, 1232
Tsp45I GTSAC 4 cut(s) 425, 754, 770, 1114
TspDTI ATGAA 7 cut(s) 81, 218, 570, 705, 773, 813, 1210
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 3 cut(s) 742, 763, 1212
Van91I CCANNNNNTGG 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 504
XagI CCTNNNNNAGG 1 cut(s) 1075
XapI RAATTY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 864
XmnI GAANNNNTTC 2 cut(s) 307, 577
XspI CTAG 2 cut(s) 380, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.