RchiOBHm_Chr2g0164401

sodium-coupled neutral amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000616
Physical Location & Seq
Forward (+)
79527226 .. 79529083
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53246

Sequence Viewer

Length: 1323 bp
ATGACTTCTGAAAGCAAACGAAACTCCGATGAGAGAGCCCCTTTGTTACGAAAGACTCAACATGGAGATGAAGATGAGGCCAGGAGTGAGAAGTATTCTGGAGCATCCTTCTATGGTTGTGTGTTCAATTTGACATGCACCATTGTCGGTTCCGGAATCATGAGCCTGCCTGCAACCCTCAAATTGTTGGGACTCATTCCGGGGGTCGTGTTGATCATCCTAGTATCATTCATAATCCAGGCATCGGTTGAGTTGTTGTTGAGGTTCAGCAAGGAAGGGTCTGCAGTTTCCTATGGTGATGTCATGGCTCATGCATATGGAAGGATTGGGAAGTCTGTACTTCAGATCACCATTGTTATTTACAGCACTGGTTCTCTCATTGATGTGCTTTCTGGATCAACCAGCTTGCATGGAGTTCACCACACCGGCATTTTGGAAGGGTGGTTTGGAGAGCATTGGTGGACTGGCCGCGCCTTCGTTCTTGTTGCTGTAACTGTCATCATATTTTTTCCATTGATGTTCTTTGAGCGCATCGATTCGGCAAGATATATATCTCTTATATCAGTTGGATTGGCTCTCGTGTTTCTTTTTGTTGTGGTTGGTGTCACAGTTTACAAATTAGTGGATGGAAGCATAGAGAGGCCAAAATGGTTTCCAAATGTGACAGATTCGACATCATTCTTTAAGATCTTCACTGCTGTCCCTGTGATTGTTTTTGCATACATTTGCCACTACAATGTCCACACAATACAGAATGAGCTTGGAGATTCTTCCCAAATGCAAGCTGTGGTACACAGTTCACTTTCTCTATGTGCAGTTGTCTATGTAATGACAGGAATTTTTGGGTTCCTCCTTTTCGGTGAATCAACTATCTCCGACTTACTGTCCAACTTTGACACTGATCTTGGCATTCCCTACAGCTGGCTGTTCAATGACATTATTCGCATTAGCTATGCCGCGCATGTCATACTAGTTTTTCCCACCATATTCTTACCTCTGCGACTCAACTTGGACGGCCTCCTTTTCCCCACTGCAAGACCTCTGACTTTAGACAAGAAGAGATTTGTGTTGGAAAGTATAGGGCTTGTGTTTATTTCCCTTGTGGGTGCAATATTCATACCCAACATTTGGGTAGCTTTCGAGTTCTCTGGAGCAACCCTGGGAGGTTTACTTGCATTTGTGTTTCCTGCTTCCATTACTCTCAAGGACCCTCATTGTATAGCAACTACCAAGGACAAGATAGTGTCAGTTTCCATGATCGTTCTTGCTGTATTTGCAAACCTGATGGCTATATATAGCAATCTGAGCTCATTGTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04724 ko04727 ko04974 map04724 map04727 map04974
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

440

Amino Acids

48.23

Weight (kDa)

6.25

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 35 - 426 2e-50 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 36 - 431 6.6e-09 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30390 AT3G30390 AT3G30390 AT5G38820 AT5G38820 AT5G38820
fragaria_vesca FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_4g28960 FvH4_6g46060 FvH4_6g46060 FvH4_6g46080
malus_domestica MD09G1077200.v1.1 MD09G1077400.v1.1 MD15G1064300.v1.1 MD16G1053900.v1.1 MD17G1067600.v1.1 MD17G1067800.v1.1
prunus_persica Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G418300_v2.0.a1 Prupe.3G246600_v2.0.a1 Prupe.3G246800_v2.0.a1 Prupe.3G246900_v2.0.a1
pyrus_communis pycom09g00430 pycom09g00450 pycom15g06100 pycom16g04690 pycom17g06820
rosa_chinensis RchiOBHm_Chr2g0164381 RchiOBHm_Chr2g0164401 RchiOBHm_Chr4g0437101 RchiOBHm_Chr6g0310121
rosa_laevigata RLG00000006468 RLG00000010508 RLG00000021456 RLG00000021458
rosa_multiflora Rmu_co8348867.1_g000001 Rmu_sc0000294.1_g000029 Rmu_sc0009487.1_g000003 Rmu_sc0018759.1_g000001 Rmu_sc0021401.1_g000003 Rmu_ssc0000006.1_g000009
rosa_roxburghii Rroxscaffold_2G00086590 Rroxscaffold_2G00086610 Rroxscaffold_5G00378170 Rroxscaffold_7G00158840
rosa_rugosa Rorug02G0508200 Rorug02G0508300 Rorug04G0298000 Rorug06G0377600
rosa_samantha Rh2AG576200 Rh2AG576400 Rh2BG587200 Rh2BG587400 Rh2CG558000 Rh2CG558200 Rh2DG596900 Rh2DG597200 Rh4AG352800 Rh4BG362300 Rh4CG376500 Rh4DG356300 Rh6AG491600 Rh6BG501000 Rh6CG506000 Rh6DG492100
rosa_wichuraiana Rw2G047720 Rw2G047740 Rw2G047820 Rw2G047840 Rw4G030890 Rw6G042770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1128
AccII CGCG 2 cut(s) 471, 959
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 2 cut(s) 469, 957
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 1 cut(s) 837
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 2 cut(s) 339, 792
AfiI CCNNNNNNNGG 3 cut(s) 244, 921, 1128
AgsI TTSAA 2 cut(s) 127, 931
AhdI GACNNNNNGTC 1 cut(s) 883
AhlI ACTAGT 1 cut(s) 970
AjnI CCWGG 3 cut(s) 80, 237, 1158
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 7 cut(s) 405, 760, 785, 921, 951, 1136, 1308
AluI AGCT 7 cut(s) 405, 760, 785, 921, 951, 1136, 1308
Alw21I GWGCWC 1 cut(s) 1310
AlwI GGATC 1 cut(s) 403
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 4 cut(s) 78, 466, 641, 1015
ApoI RAATTY 1 cut(s) 837
AspLEI GCGC 3 cut(s) 473, 531, 961
AspS9I GGNCC 1 cut(s) 1207
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 308, 340, 410, 872
AvaII GGWCC 1 cut(s) 1207
BanII GRGCYC 2 cut(s) 40, 1310
BauI CACGAG 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 1310
BccI CCATC 2 cut(s) 620, 1279
BceAI ACGGC 1 cut(s) 1030
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 3 cut(s) 82, 239, 1160
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 970
BfaI CTAG 2 cut(s) 221, 971
BfmI CTRYAG 2 cut(s) 282, 916
BglII AGATCT 1 cut(s) 687
BisI GCNGC 2 cut(s) 469, 957
BlsI GCNGC 2 cut(s) 470, 958
Bme1390I CCNGG 4 cut(s) 82, 201, 239, 1160
Bme18I GGWCC 1 cut(s) 1207
BmeRI GACNNNNNGTC 1 cut(s) 883
BmgT120I GGNCC 1 cut(s) 1207
BmiI GGNNCC 3 cut(s) 151, 848, 1209
BmrFI CCNGG 4 cut(s) 82, 201, 239, 1160
BmsI GCATC 3 cut(s) 113, 251, 540
BpmI CTGGAG 2 cut(s) 120, 1170
BpuEI CTTGAG 1 cut(s) 1187
BpuMI CCSGG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 534
BsaBI GATNNNNATC 1 cut(s) 550
BsaJI CCNNGG 4 cut(s) 200, 1158, 1159, 1230
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 921, 1128
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 2 cut(s) 373, 469
Bse8I GATNNNNATC 1 cut(s) 550
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 3 cut(s) 82, 239, 1160
BseCI ATCGAT 1 cut(s) 534
BseDI CCNNGG 4 cut(s) 200, 1158, 1159, 1230
BseGI GGATG 3 cut(s) 104, 216, 631
BseJI GATNNNNATC 1 cut(s) 550
BseLI CCNNNNNNNGG 3 cut(s) 244, 921, 1128
BseMII CTCAG 1 cut(s) 1295
BseNI ACTGG 2 cut(s) 373, 469
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 2 cut(s) 471, 959
BshFI GGCC 4 cut(s) 80, 468, 643, 1017
BshVI ATCGAT 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 1310
BsiSI CCGG 3 cut(s) 153, 200, 426
BslFI GGGAC 2 cut(s) 204, 686
BslI CCNNNNNNNGG 3 cut(s) 244, 921, 1128
BsmFI GGGAC 2 cut(s) 204, 686
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 4 cut(s) 80, 468, 643, 1017
Bsp1286I GDGCHC 2 cut(s) 40, 1310
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
BspACI CCGC 2 cut(s) 469, 957
BspANI GGCC 4 cut(s) 80, 468, 643, 1017
BspCNI CTCAG 1 cut(s) 1296
BspDI ATCGAT 1 cut(s) 534
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 2 cut(s) 471, 959
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 151, 848, 1209
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 2 cut(s) 373, 469
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 4 cut(s) 200, 1158, 1159, 1230
BssMI GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 1230
Bst2BI CACGAG 1 cut(s) 578
Bst2UI CCWGG 3 cut(s) 82, 239, 1160
Bst4CI ACNGT 4 cut(s) 496, 610, 797, 885
Bst6I CTCTTC 1 cut(s) 1052
BstC8I GCNNGC 5 cut(s) 167, 171, 407, 783, 923
BstDEI CTNAG 1 cut(s) 1304
BstF5I GGATG 3 cut(s) 104, 216, 631
BstFNI CGCG 2 cut(s) 471, 959
BstHHI GCGC 3 cut(s) 473, 531, 961
BstKTI GATC 6 cut(s) 216, 348, 398, 690, 904, 1260
BstMBI GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
BstMWI GCNNNNNNNGC 2 cut(s) 1274, 1305
BstNI CCWGG 3 cut(s) 82, 239, 1160
BstNSI RCATGY 2 cut(s) 138, 965
BstSCI CCNGG 4 cut(s) 80, 199, 237, 1158
BstSFI CTRYAG 2 cut(s) 282, 916
BstUI CGCG 2 cut(s) 471, 959
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
Bsu15I ATCGAT 1 cut(s) 534
BsuRI GGCC 4 cut(s) 80, 468, 643, 1017
BsuTUI ATCGAT 1 cut(s) 534
BtsCI GGATG 3 cut(s) 104, 216, 631
BtsI GCAGTG 2 cut(s) 693, 1029
BtsIMutI CAGTG 4 cut(s) 366, 693, 897, 1029
Cac8I GCNNGC 5 cut(s) 167, 171, 407, 783, 923
CciI TCATGA 1 cut(s) 159
CfoI GCGC 3 cut(s) 473, 531, 961
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 1207
ClaI ATCGAT 1 cut(s) 534
Csp6I GTAC 2 cut(s) 338, 791
CviAII CATG 8 cut(s) 62, 135, 160, 304, 311, 410, 962, 1255
CviQI GTAC 2 cut(s) 338, 791
DdeI CTNAG 1 cut(s) 1304
DpnI GATC 6 cut(s) 215, 347, 397, 689, 903, 1259
DpnII GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
DriI GACNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 1052
Eam1105I GACNNNNNGTC 1 cut(s) 883
EarI CTCTTC 1 cut(s) 1052
Ecl136II GAGCTC 1 cut(s) 1308
Eco130I CCWWGG 1 cut(s) 1230
Eco24I GRGCYC 2 cut(s) 40, 1310
Eco47I GGWCC 1 cut(s) 1207
Eco53kI GAGCTC 1 cut(s) 1308
Eco57I CTGAAG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 1308
EcoO109I RGGNCCY 1 cut(s) 1207
EcoRII CCWGG 3 cut(s) 80, 237, 1158
EcoT14I CCWWGG 1 cut(s) 1230
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 40, 1310
ErhI CCWWGG 1 cut(s) 1230
FaeI CATG 8 cut(s) 65, 138, 163, 307, 314, 413, 965, 1258
FaqI GGGAC 2 cut(s) 204, 686
FatI CATG 8 cut(s) 61, 134, 159, 303, 310, 409, 961, 1254
FauNDI CATATG 1 cut(s) 316
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 469, 957
FokI GGATG 3 cut(s) 91, 203, 638
FriOI GRGCYC 2 cut(s) 40, 1310
Fsp4HI GCNGC 2 cut(s) 469, 957
FspBI CTAG 2 cut(s) 221, 971
GlaI GCGC 3 cut(s) 472, 530, 960
GluI GCNGC 2 cut(s) 469, 957
GsuI CTGGAG 2 cut(s) 120, 1170
HaeIII GGCC 4 cut(s) 80, 468, 643, 1017
HapII CCGG 3 cut(s) 153, 200, 426
HhaI GCGC 3 cut(s) 473, 531, 961
Hin1II CATG 8 cut(s) 65, 138, 163, 307, 314, 413, 965, 1258
Hin6I GCGC 3 cut(s) 471, 529, 959
HinP1I GCGC 3 cut(s) 471, 529, 959
HinfI GANTC 8 cut(s) 55, 156, 192, 536, 668, 767, 863, 1002
HpaII CCGG 3 cut(s) 153, 200, 426
HphI GGTGA 4 cut(s) 308, 340, 410, 872
Hpy166II GTNNAC 7 cut(s) 418, 462, 613, 742, 793, 800, 1169
Hpy188I TCNGA 6 cut(s) 10, 28, 345, 877, 1044, 1305
Hpy188III TCNNGA 5 cut(s) 99, 153, 160, 393, 1149
Hpy8I GTNNAC 7 cut(s) 418, 462, 613, 742, 793, 800, 1169
HpyAV CCTTC 5 cut(s) 118, 269, 315, 431, 484
HpyCH4III ACNGT 4 cut(s) 496, 610, 797, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 1274, 1305
HpyF3I CTNAG 1 cut(s) 1304
Hsp92II CATG 8 cut(s) 65, 138, 163, 307, 314, 413, 965, 1258
HspAI GCGC 3 cut(s) 471, 529, 959
Kpn2I TCCGGA 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
LmnI GCTCC 2 cut(s) 101, 1151
LweI GCATC 3 cut(s) 113, 251, 540
MaeI CTAG 2 cut(s) 221, 971
MaeIII GTNAC 4 cut(s) 45, 490, 604, 661
MalI GATC 6 cut(s) 215, 347, 397, 689, 903, 1259
MboI GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
MboII GAAGA 4 cut(s) 83, 682, 762, 1069
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 2 cut(s) 40, 1310
MluCI AATT 4 cut(s) 127, 182, 617, 837
MlyI GAGTC 3 cut(s) 49, 186, 996
MmeI TCCRAC 4 cut(s) 547, 900, 912, 1050
Mph1103I ATGCAT 1 cut(s) 316
MroI TCCGGA 1 cut(s) 152
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 4 cut(s) 66, 315, 383, 735
MspA1I CMGCKG 1 cut(s) 921
MspI CCGG 3 cut(s) 153, 200, 426
MspR9I CCNGG 4 cut(s) 82, 201, 239, 1160
Mva1269I GAATGC 1 cut(s) 909
MvaI CCWGG 3 cut(s) 82, 239, 1160
MvnI CGCG 2 cut(s) 471, 959
MwoI GCNNNNNNNGC 2 cut(s) 1274, 1305
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 316
NdeII GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
NlaIII CATG 8 cut(s) 65, 138, 163, 307, 314, 413, 965, 1258
NlaIV GGNNCC 3 cut(s) 151, 848, 1209
NmuCI GTSAC 2 cut(s) 604, 661
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 2 cut(s) 138, 965
PagI TCATGA 1 cut(s) 159
PasI CCCWGGG 1 cut(s) 1159
PctI GAATGC 1 cut(s) 909
PfeI GAWTC 5 cut(s) 156, 536, 668, 767, 863
PflMI CCANNNNNTGG 1 cut(s) 1128
PkrI GCNGC 2 cut(s) 470, 958
PleI GAGTC 3 cut(s) 49, 186, 996
PpsI GAGTC 3 cut(s) 49, 186, 996
PpuMI RGGWCCY 1 cut(s) 1207
Psp124BI GAGCTC 1 cut(s) 1310
Psp5II RGGWCCY 1 cut(s) 1207
Psp6I CCWGG 3 cut(s) 80, 237, 1158
PspGI CCWGG 3 cut(s) 80, 237, 1158
PspN4I GGNNCC 3 cut(s) 151, 848, 1209
PspPI GGNCC 1 cut(s) 1207
PspPPI RGGWCCY 1 cut(s) 1207
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 687
PvuII CAGCTG 1 cut(s) 921
RsaI GTAC 2 cut(s) 339, 792
RsaNI GTAC 2 cut(s) 338, 791
RseI CAYNNNNRTG 4 cut(s) 66, 315, 383, 735
SacI GAGCTC 1 cut(s) 1310
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 2 cut(s) 469, 957
Sau3AI GATC 6 cut(s) 213, 345, 395, 687, 901, 1257
Sau96I GGNCC 1 cut(s) 1207
SchI GAGTC 3 cut(s) 49, 186, 996
ScrFI CCNGG 4 cut(s) 82, 201, 239, 1160
SduI GDGCHC 2 cut(s) 40, 1310
SfaNI GCATC 3 cut(s) 113, 251, 540
SfcI CTRYAG 2 cut(s) 282, 916
SinI GGWCC 1 cut(s) 1207
SmiMI CAYNNNNRTG 4 cut(s) 66, 315, 383, 735
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
SpeI ACTAGT 1 cut(s) 970
Sse9I AATT 4 cut(s) 127, 182, 617, 837
SsiI CCGC 2 cut(s) 469, 957
SspI AATATT 1 cut(s) 1113
SspMI CTAG 2 cut(s) 221, 971
SstI GAGCTC 1 cut(s) 1310
StyD4I CCNGG 4 cut(s) 80, 199, 237, 1158
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 4 cut(s) 496, 610, 797, 885
TaqI TCGA 3 cut(s) 534, 671, 1140
TasI AATT 4 cut(s) 127, 182, 617, 837
TatI WGTACW 1 cut(s) 337
TauI GCSGC 2 cut(s) 471, 959
TfiI GAWTC 5 cut(s) 156, 536, 668, 767, 863
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 4 cut(s) 373, 700, 904, 1036
TseFI GTSAC 2 cut(s) 604, 661
Tsp45I GTSAC 2 cut(s) 604, 661
TspDTI ATGAA 3 cut(s) 84, 220, 1105
TspRI CASTG 4 cut(s) 373, 700, 904, 1036
Van91I CCANNNNNTGG 1 cut(s) 1128
VpaK11BI GGWCC 1 cut(s) 1207
XapI RAATTY 1 cut(s) 837
XceI RCATGY 2 cut(s) 138, 965
XspI CTAG 2 cut(s) 221, 971
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.