AT3G30390

amino acid transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
11976837 .. 11979646
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G30390.3

Sequence Viewer

Length: 1383 bp
ATGACAGTTGTTGGAGATGTTGCTCCAATTCCAAGGAGGAACAGTTCTACTTGCTCTAATGATATCGCTGCTCCGTTATTACCAGAGTGTCATGGAGATGAAGTTGCTCATGATGAATTCAATGGAGCTTCTTTTAGTGGCGCGGTTTTTAACCTCGCCACGACTATAATTGGTGCTGGTATCATGGCTTTGCCTGCTACAATGAAGATTCTTGGACTTGGACTTGGAATCACGATGATTGTTGTTATGGCTTTCTTGACTGATGCGTCGATTGAGTTCTTGCTTAGGTTTAGTAAAGCTGGGAAGAATCGATCTTACGGTGGTTTAATGGGTGGTTCTTTTGGTAATCCTGGAAGGATTTTGCTTCAAGTCGCGGTTTTAGTTAATAACATCGGTGTTTTGATTGTATACATGATCATTATAGGTGATGTGTTGGCTGGAAAGACGGAAGATGGTATCCATCATTTCGGTGTTCTCGAAGGATGGTTTGGTCACCATTGGTGGAATGGAAGAGCTGCTATTCTTCTGATTACTACTCTTGGTGTGTTTGCTCCATTGGCTTGCTTCAAGCGAATCGATTCTTTGAAATTTACATCGGCCTTATCCGTGGCTCTGGCGGTTGTGTTTCTCATTATTACTGCGGGAATTTCAATTATGAAGTTGATCAGTGGCGGTGTGGCGATGCCAAGATTGTTACCAGATGTTACTGACTTAACATCTTTCTGGAATCTCTTCACAGTCGTACCTGTTCTTGTCACAGCATTCATTTGCCATTACAATGTTCACAGTATACAGAACGAGCTCGAAGACCCCTCTCAGATAAGACCTGTTGTTCGATCAGCACTTATGCTCTGCTCATCTGTTTACATAATGACAAGTATTTTCGGGTTCCTCTTGTTTGGTGATGATACTCTTGATGATGTCCTTGCAAACTTTGACACTGATCTTGGAATCCCTTTTGGTTCTATCCTTAATGATGCGGTTCGAGTTAGCTACGCGCTTCATTTGATGCTCGTGTTCCCGATTGTTTTCTACCCTCTTCGGATTAACATTGACGGGCTCTTGTTCCCTTCCGCTCGATCATTATCTACCTCAAATGTGAGGTTCGGTTGCCTCACTGCCGGTCTCATCTCTGTAATCTTCTTGGGTGCAAACTTCATCCCAAGCATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCCGCTGTTTGTCTCGGCTTCATCTTCCCAGCTTCTATCATACTAAAGGATCGTCATGACAAAGCAACAAACAGGGACACAACCTTAGCTATTTTCATGATTGTTCTTGCGGTATTGTCCAATGCAATCGCCATTTACAGCGATGCTTATGCGCTATTCAAGAAGAACGCTCCTCGTGAGTAA

Protein Analysis

460

Amino Acids

49.52

Weight (kDa)

6.05

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 43 - 447 3.8e-56 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 44 - 280 3.5e-09 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 1076
AccI GTMKAC 2 cut(s) 408, 790
AccII CGCG 3 cut(s) 143, 374, 998
AclWI GGATC 1 cut(s) 1257
AcsI RAATTY 3 cut(s) 116, 587, 645
AfaI GTAC 1 cut(s) 744
AgsI TTSAA 6 cut(s) 121, 368, 568, 586, 651, 1360
AjnI CCWGG 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AloI GAACNNNNNNTCC 2 cut(s) 28, 60
AluBI AGCT 7 cut(s) 128, 299, 515, 802, 993, 1232, 1289
AluI AGCT 7 cut(s) 128, 299, 515, 802, 993, 1232, 1289
Alw21I GWGCWC 1 cut(s) 804
Alw26I GTCTC 2 cut(s) 1130, 1217
AlwI GGATC 1 cut(s) 1257
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 2 cut(s) 68, 515
ApoI RAATTY 3 cut(s) 116, 587, 645
ArsI GACNNNNNNTTYG 2 cut(s) 816, 848
Asp700I GAANNNNTTC 2 cut(s) 577, 731
AspLEI GCGC 3 cut(s) 143, 1000, 1354
AsuHPI GGTGA 3 cut(s) 437, 485, 914
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
BanII GRGCYC 2 cut(s) 804, 1062
BauI CACGAG 2 cut(s) 1013, 1374
BbsI GAAGAC 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 2 cut(s) 55, 502
BccI CCATC 3 cut(s) 446, 468, 477
BcgI CGANNNNNNTGC 2 cut(s) 1331, 1365
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 467
BclI TGATCA 2 cut(s) 414, 663
BcoDI GTCTC 2 cut(s) 1130, 1217
BfuI GTATCC 1 cut(s) 467
BisI GCNGC 3 cut(s) 69, 516, 1203
BlsI GCNGC 3 cut(s) 70, 517, 1204
Bme1390I CCNGG 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 890
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 6 cut(s) 253, 672, 967, 999, 1165, 1333
BpiI GAAGAC 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 1212
Bpu10I CCTNAGC 2 cut(s) 284, 1285
Bsa29I ATCGAT 2 cut(s) 310, 576
BsaBI GATNNNNATC 1 cut(s) 1084
BsaI GGTCTC 1 cut(s) 1130
BsaJI CCNNGG 2 cut(s) 32, 606
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 87, 117
Bse118I RCCGGY 1 cut(s) 1121
Bse1I ACTGG 1 cut(s) 1195
Bse8I GATNNNNATC 1 cut(s) 1084
BseBI CCWGG 1 cut(s) 351
BseCI ATCGAT 2 cut(s) 310, 576
BseDI CCNNGG 2 cut(s) 32, 606
BseGI GGATG 3 cut(s) 488, 1158, 1180
BseJI GATNNNNATC 1 cut(s) 1084
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 1 cut(s) 1195
BseRI GAGGAG 1 cut(s) 1362
BseXI GCAGC 2 cut(s) 55, 502
BseYI CCCAGC 2 cut(s) 299, 1228
Bsh1236I CGCG 3 cut(s) 143, 374, 998
BshFI GGCC 1 cut(s) 599
BshVI ATCGAT 2 cut(s) 310, 576
BsiHKAI GWGCWC 1 cut(s) 804
BsiSI CCGG 1 cut(s) 1122
BslFI GGGAC 1 cut(s) 1289
BsmAI GTCTC 2 cut(s) 1130, 1217
BsmFI GGGAC 1 cut(s) 1289
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 1 cut(s) 599
Bso31I GGTCTC 1 cut(s) 1130
Bsp1286I GDGCHC 2 cut(s) 804, 1062
Bsp143I GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 829
BspDI ATCGAT 2 cut(s) 310, 576
BspFNI CGCG 3 cut(s) 143, 374, 998
BspHI TCATGA 3 cut(s) 109, 1255, 1296
BspLI GGNNCC 1 cut(s) 890
BspPI GGATC 1 cut(s) 1257
BspQI GCTCTTC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 1130
BsrBI CCGCTC 1 cut(s) 1076
BsrFI RCCGGY 1 cut(s) 1121
BsrI ACTGG 1 cut(s) 1195
BssAI RCCGGY 1 cut(s) 1121
BssECI CCNNGG 2 cut(s) 32, 606
BssMI GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
BssNAI GTATAC 2 cut(s) 409, 791
BssSI CACGAG 2 cut(s) 1013, 1374
BssT1I CCWWGG 1 cut(s) 32
Bst1107I GTATAC 2 cut(s) 409, 791
Bst2BI CACGAG 2 cut(s) 1013, 1374
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 5 cut(s) 7, 44, 320, 739, 788
Bst6I CTCTTC 3 cut(s) 505, 737, 1044
BstC8I GCNNGC 2 cut(s) 195, 562
BstDEI CTNAG 3 cut(s) 284, 816, 1285
BstDSI CCRYGG 1 cut(s) 606
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 3 cut(s) 488, 1158, 1180
BstFNI CGCG 3 cut(s) 143, 374, 998
BstHHI GCGC 3 cut(s) 143, 1000, 1354
BstKTI GATC 7 cut(s) 314, 417, 666, 839, 946, 1082, 1252
BstMAI GTCTC 2 cut(s) 1130, 1217
BstMBI GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
BstMWI GCNNNNNNNGC 3 cut(s) 194, 557, 1202
BstNI CCWGG 1 cut(s) 351
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 349
BstUI CGCG 3 cut(s) 143, 374, 998
BstV1I GCAGC 2 cut(s) 55, 502
BstV2I GAAGAC 1 cut(s) 813
BstXI CCANNNNNNTGG 2 cut(s) 1170, 1190
BstZ17I GTATAC 2 cut(s) 409, 791
Bsu15I ATCGAT 2 cut(s) 310, 576
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 1 cut(s) 599
BsuTUI ATCGAT 2 cut(s) 310, 576
BtgI CCRYGG 1 cut(s) 606
BtgZI GCGATG 2 cut(s) 695, 1356
BtsCI GGATG 3 cut(s) 488, 1158, 1180
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 4 cut(s) 673, 939, 1116, 1188
Cac8I GCNNGC 2 cut(s) 195, 562
CciI TCATGA 3 cut(s) 109, 1255, 1296
CfoI GCGC 3 cut(s) 143, 1000, 1354
Cfr10I RCCGGY 1 cut(s) 1121
ClaI ATCGAT 2 cut(s) 310, 576
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 743
CviAII CATG 6 cut(s) 92, 110, 184, 412, 1256, 1297
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 3 cut(s) 284, 816, 1285
DpnI GATC 7 cut(s) 313, 416, 665, 838, 945, 1081, 1251
DpnII GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
DrdI GACNNNNNNGTC 1 cut(s) 265
DseDI GACNNNNNNGTC 1 cut(s) 265
Eam1104I CTCTTC 3 cut(s) 505, 737, 1044
EarI CTCTTC 3 cut(s) 505, 737, 1044
Ecl136II GAGCTC 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 2 cut(s) 804, 1062
Eco31I GGTCTC 1 cut(s) 1130
Eco32I GATATC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 802
Eco91I GGTNACC 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 802
EcoO65I GGTNACC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 349
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 2 cut(s) 804, 1062
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 6 cut(s) 95, 113, 187, 415, 1259, 1300
FaqI GGGAC 1 cut(s) 1289
FatI CATG 6 cut(s) 91, 109, 183, 411, 1255, 1296
FauI CCCGC 1 cut(s) 634
FbaI TGATCA 2 cut(s) 414, 663
FblI GTMKAC 2 cut(s) 408, 790
Fnu4HI GCNGC 3 cut(s) 69, 516, 1203
FokI GGATG 3 cut(s) 495, 1145, 1187
FriOI GRGCYC 2 cut(s) 804, 1062
Fsp4HI GCNGC 3 cut(s) 69, 516, 1203
GlaI GCGC 3 cut(s) 142, 999, 1353
GluI GCNGC 3 cut(s) 69, 516, 1203
GsaI CCCAGC 2 cut(s) 303, 1232
GsuI CTGGAG 1 cut(s) 1212
HaeIII GGCC 1 cut(s) 599
HapII CCGG 1 cut(s) 1122
HgaI GACGC 1 cut(s) 255
HhaI GCGC 3 cut(s) 143, 1000, 1354
Hin1II CATG 6 cut(s) 95, 113, 187, 415, 1259, 1300
Hin6I GCGC 3 cut(s) 141, 998, 1352
HinP1I GCGC 3 cut(s) 141, 998, 1352
HinfI GANTC 7 cut(s) 208, 228, 307, 573, 578, 727, 951
HpaII CCGG 1 cut(s) 1122
HphI GGTGA 3 cut(s) 437, 485, 914
Hpy166II GTNNAC 4 cut(s) 409, 784, 791, 865
Hpy188I TCNGA 3 cut(s) 528, 819, 1044
Hpy8I GTNNAC 4 cut(s) 409, 784, 791, 865
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 3 cut(s) 348, 473, 1080
HpyCH4III ACNGT 5 cut(s) 7, 44, 320, 739, 788
HpyCH4V TGCA 3 cut(s) 929, 1151, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 557, 1202
HpyF3I CTNAG 3 cut(s) 284, 816, 1285
Hsp92II CATG 6 cut(s) 95, 113, 187, 415, 1259, 1300
HspAI GCGC 3 cut(s) 141, 998, 1352
Ksp22I TGATCA 2 cut(s) 414, 663
Kzo9I GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
LguI GCTCTTC 1 cut(s) 505
LmnI GCTCC 6 cut(s) 28, 76, 125, 556, 1193, 1375
Lsp1109I GCAGC 2 cut(s) 55, 502
LweI GCATC 6 cut(s) 253, 672, 967, 999, 1165, 1333
MaeIII GTNAC 4 cut(s) 491, 693, 703, 754
MalI GATC 7 cut(s) 313, 416, 665, 838, 945, 1081, 1251
MbiI CCGCTC 1 cut(s) 1076
MboI GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
MhlI GDGCHC 2 cut(s) 804, 1062
MluCI AATT 7 cut(s) 27, 116, 168, 587, 645, 651, 1184
MnlI CCTC 9 cut(s) 30, 164, 823, 902, 1047, 1095, 1102, 1124, 1383
MroXI GAANNNNTTC 2 cut(s) 577, 731
MseI TTAA 6 cut(s) 150, 326, 384, 713, 972, 1047
MslI CAYNNNNRTG 3 cut(s) 96, 468, 777
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 1 cut(s) 1122
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 761
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 3 cut(s) 143, 374, 998
MwoI GCNNNNNNNGC 3 cut(s) 194, 557, 1202
NdeII GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
NlaIII CATG 6 cut(s) 95, 113, 187, 415, 1259, 1300
NlaIV GGNNCC 1 cut(s) 890
NmeAIII GCCGAG 1 cut(s) 1194
NmuCI GTSAC 2 cut(s) 491, 754
PagI TCATGA 3 cut(s) 109, 1255, 1296
PciSI GCTCTTC 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PctI GAATGC 1 cut(s) 761
PdmI GAANNNNTTC 2 cut(s) 577, 731
PfeI GAWTC 7 cut(s) 208, 228, 307, 573, 578, 727, 951
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 3 cut(s) 70, 517, 1204
Psp124BI GAGCTC 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 349
PspEI GGTNACC 1 cut(s) 491
PspFI CCCAGC 2 cut(s) 299, 1228
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 890
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
RseI CAYNNNNRTG 3 cut(s) 96, 468, 777
SacI GAGCTC 1 cut(s) 804
SapI GCTCTTC 1 cut(s) 505
SaqAI TTAA 6 cut(s) 150, 326, 384, 713, 972, 1047
SatI GCNGC 3 cut(s) 69, 516, 1203
Sau3AI GATC 7 cut(s) 311, 414, 663, 836, 943, 1079, 1249
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 2 cut(s) 804, 1062
SfaNI GCATC 6 cut(s) 253, 672, 967, 999, 1165, 1333
SmiMI CAYNNNNRTG 3 cut(s) 96, 468, 777
Sse9I AATT 7 cut(s) 27, 116, 168, 587, 645, 651, 1184
SstI GAGCTC 1 cut(s) 804
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 5 cut(s) 7, 44, 320, 739, 788
TaqI TCGA 8 cut(s) 269, 310, 477, 576, 804, 835, 985, 1078
TasI AATT 7 cut(s) 27, 116, 168, 587, 645, 651, 1184
TauI GCSGC 1 cut(s) 1205
TfiI GAWTC 7 cut(s) 208, 228, 307, 573, 578, 727, 951
Tru1I TTAA 6 cut(s) 150, 326, 384, 713, 972, 1047
Tru9I TTAA 6 cut(s) 150, 326, 384, 713, 972, 1047
TscAI CASTG 4 cut(s) 673, 946, 1123, 1195
TseFI GTSAC 2 cut(s) 491, 754
TseI GCWGC 2 cut(s) 68, 515
Tsp45I GTSAC 2 cut(s) 491, 754
TspDTI ATGAA 9 cut(s) 114, 129, 218, 671, 754, 992, 1147, 1210, 1285
TspGWI ACGGA 3 cut(s) 63, 461, 595
TspRI CASTG 4 cut(s) 673, 946, 1123, 1195
XapI RAATTY 3 cut(s) 116, 587, 645
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XmiI GTMKAC 2 cut(s) 408, 790
XmnI GAANNNNTTC 2 cut(s) 577, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.