Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000294.1

Orthogroup ID

OG0000616

Physical Location & Seq

Genomic Coordinates Reverse (-)

158345 .. 159346

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000294.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgacaattccgaccgccgacaggaaattcaggcggagccccaaagccccgctgttaccccaaaagcgcgacgacaatgagcgcgtcgaggccggcttcgacggagcttcgttctccggcgccgtgttcaacctctccaccacaatcgtcggcgccggaattatggccctgccgtccgccgtcaagcaactggggttgattcccggcctaattatgatcgtattgggcgccgtgctgaccgaatcttccatcgacatgatcctccggttcacacgcgcctccaagacatcctcgtattccggtctggtcggcgactcgttcggtgggcccggccggaacctcctccaggtctgcgtcgtcgtcaacaacctcggcatgctcgtcgtctacatgatcatcatcggtgatgtgctgtcggggacctggtcgggtggggtccaccactcgggtgtgatggaggaatggtttggtcagcgttggtggaccgcacgattctcgctgctacttttcaccacgctctctgtgctcgcgcctcttatttctttcaagcgcgtggattcgttgagatacacatcggcattgtcagttggtttggcggttgtgtttgtggcgatcatagccggagtggcgatagttaagttgatagaaggaggggttggatttccacggttgatgccgaagcttgaggaccaagcatccttttggaagcttttcactaccattcccattcttgttactgcctatatctgccaccataacagtaagttttttgaaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04724 ko04727 ko04974 map04724 map04727 map04974

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

259

Amino Acids

28.04

Weight (kDa)

9.51

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30390 AT3G30390 AT3G30390 AT5G38820 AT5G38820 AT5G38820
fragaria_vesca	FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_4g28960 FvH4_6g46060 FvH4_6g46060 FvH4_6g46080
malus_domestica	MD09G1077200.v1.1 MD09G1077400.v1.1 MD15G1064300.v1.1 MD16G1053900.v1.1 MD17G1067600.v1.1 MD17G1067800.v1.1
prunus_persica	Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G418300_v2.0.a1 Prupe.3G246600_v2.0.a1 Prupe.3G246800_v2.0.a1 Prupe.3G246900_v2.0.a1
pyrus_communis	pycom09g00430 pycom09g00450 pycom15g06100 pycom16g04690 pycom17g06820
rosa_chinensis	RchiOBHm_Chr2g0164381 RchiOBHm_Chr2g0164401 RchiOBHm_Chr4g0437101 RchiOBHm_Chr6g0310121
rosa_laevigata	RLG00000006468 RLG00000010508 RLG00000021456 RLG00000021458
rosa_multiflora	Rmu_co8348867.1_g000001 Rmu_sc0000294.1_g000029 Rmu_sc0009487.1_g000003 Rmu_sc0018759.1_g000001 Rmu_sc0021401.1_g000003 Rmu_ssc0000006.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086590 Rroxscaffold_2G00086610 Rroxscaffold_5G00378170 Rroxscaffold_7G00158840
rosa_rugosa	Rorug02G0508200 Rorug02G0508300 Rorug04G0298000 Rorug06G0377600
rosa_samantha	Rh2AG576200 Rh2AG576400 Rh2BG587200 Rh2BG587400 Rh2CG558000 Rh2CG558200 Rh2DG596900 Rh2DG597200 Rh4AG352800 Rh4BG362300 Rh4CG376500 Rh4DG356300 Rh6AG491600 Rh6BG501000 Rh6CG506000 Rh6DG492100
rosa_wichuraiana	Rw2G047720 Rw2G047740 Rw2G047820 Rw2G047840 Rw4G030890 Rw6G042770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	119, 152, 227
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	5 cut(s)	69, 84, 276, 530, 552
AciI	CCGC	6 cut(s)	15, 34, 50, 177, 486, 596
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	3 cut(s)	120, 153, 228
AfiI	CCNNNNNNNGG	3 cut(s)	21, 346, 445
AgsI	TTSAA	3 cut(s)	130, 547, 773
AjnI	CCWGG	2 cut(s)	345, 422
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	4 cut(s)	107, 682, 709, 777
AluI	AGCT	4 cut(s)	107, 682, 709, 777
Alw21I	GWGCWC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	445
AoxI	GGCC	5 cut(s)	90, 165, 205, 326, 331
ApaI	GGGCCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	8 cut(s)	69, 84, 122, 155, 230, 278, 532, 552
AspS9I	GGNCC	7 cut(s)	166, 326, 327, 420, 436, 483, 688
AsuC2I	CCSGG	2 cut(s)	204, 330
AsuHPI	GGTGA	2 cut(s)	416, 502
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	4 cut(s)	420, 436, 483, 688
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	3 cut(s)	119, 152, 227
BanII	GRGCYC	2 cut(s)	41, 330
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	2 cut(s)	257, 448
BceAI	ACGGC	4 cut(s)	107, 157, 164, 215
BcgI	CGANNNNNNTGC	4 cut(s)	364, 398, 477, 511
BciT130I	CCWGG	2 cut(s)	347, 424
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	204, 330
BfoI	RGCGCY	3 cut(s)	123, 156, 231
BglI	GCCNNNNNGGC	1 cut(s)	626
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	4 cut(s)	204, 330, 347, 424
Bme18I	GGWCC	4 cut(s)	420, 436, 483, 688
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	7 cut(s)	166, 326, 327, 420, 436, 483, 688
BmiI	GGNNCC	8 cut(s)	38, 121, 154, 229, 328, 338, 421, 437
BmrFI	CCNGG	4 cut(s)	204, 330, 347, 424
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	663, 704
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	2 cut(s)	204, 330
BsaBI	GATNNNNATC	2 cut(s)	398, 571
BsaHI	GRCGYC	3 cut(s)	120, 153, 228
BsaJI	CCNNGG	2 cut(s)	370, 665
BsaWI	WCCGGW	2 cut(s)	264, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 346, 445
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	195
Bse8I	GATNNNNATC	2 cut(s)	398, 571
BseBI	CCWGG	2 cut(s)	347, 424
BseDI	CCNNGG	2 cut(s)	370, 665
BseGI	GGATG	2 cut(s)	287, 695
BseJI	GATNNNNATC	2 cut(s)	398, 571
BseLI	CCNNNNNNNGG	3 cut(s)	21, 346, 445
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	330
BseX3I	CGGCCG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	486
Bsh1236I	CGCG	5 cut(s)	69, 84, 276, 530, 552
Bsh1285I	CGRYCG	2 cut(s)	15, 334
BshFI	GGCC	5 cut(s)	92, 167, 207, 328, 333
BshNI	GGYRCC	3 cut(s)	119, 152, 227
BsiEI	CGRYCG	2 cut(s)	15, 334
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	9 cut(s)	93, 117, 156, 204, 265, 300, 330, 334, 621
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	21, 346, 445
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	5 cut(s)	92, 167, 207, 328, 333
BsoBI	CYCGRG	1 cut(s)	445
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	3 cut(s)	41, 330, 528
Bsp143I	GATC	4 cut(s)	216, 258, 393, 612
BspACI	CCGC	6 cut(s)	15, 34, 50, 177, 486, 596
BspANI	GGCC	5 cut(s)	92, 167, 207, 328, 333
BspFNI	CGCG	5 cut(s)	69, 84, 276, 530, 552
BspLI	GGNNCC	8 cut(s)	38, 121, 154, 229, 328, 338, 421, 437
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	3 cut(s)	119, 152, 227
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	370, 665
BssMI	GATC	4 cut(s)	216, 258, 393, 612
BssNI	GRCGYC	3 cut(s)	120, 153, 228
Bst2UI	CCWGG	2 cut(s)	347, 424
Bst4CI	ACNGT	2 cut(s)	669, 761
BstACI	GRCGYC	3 cut(s)	120, 153, 228
BstC8I	GCNNGC	3 cut(s)	94, 377, 528
BstDSI	CCRYGG	1 cut(s)	665
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	287, 695
BstFNI	CGCG	5 cut(s)	69, 84, 276, 530, 552
BstH2I	RGCGCY	3 cut(s)	123, 156, 231
BstHHI	GCGC	8 cut(s)	69, 84, 122, 155, 230, 278, 532, 552
BstKTI	GATC	4 cut(s)	219, 261, 396, 615
BstMBI	GATC	4 cut(s)	216, 258, 393, 612
BstMCI	CGRYCG	2 cut(s)	15, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	523, 617, 626
BstNI	CCWGG	2 cut(s)	347, 424
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	4 cut(s)	202, 328, 345, 422
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	5 cut(s)	69, 84, 276, 530, 552
BstV1I	GCAGC	1 cut(s)	486
BstZI	CGGCCG	1 cut(s)	331
BsuRI	GGCC	5 cut(s)	92, 167, 207, 328, 333
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	2 cut(s)	287, 695
Cac8I	GCNNGC	3 cut(s)	94, 377, 528
CfoI	GCGC	8 cut(s)	69, 84, 122, 155, 230, 278, 532, 552
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	7 cut(s)	166, 326, 327, 420, 436, 483, 688
CseI	GACGC	2 cut(s)	73, 343
CsiI	ACCWGGT	1 cut(s)	422
CviAII	CATG	3 cut(s)	256, 376, 391
DinI	GGCGCC	3 cut(s)	121, 154, 229
DpnI	GATC	4 cut(s)	218, 260, 395, 614
DpnII	GATC	4 cut(s)	216, 258, 393, 612
EaeI	YGGCCR	1 cut(s)	331
EagI	CGGCCG	1 cut(s)	331
EciI	GGCGGA	2 cut(s)	49, 166
EclXI	CGGCCG	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	41, 330
Eco47I	GGWCC	4 cut(s)	420, 436, 483, 688
Eco52I	CGGCCG	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	445
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	345, 422
EcoT38I	GRGCYC	2 cut(s)	41, 330
EgeI	GGCGCC	3 cut(s)	121, 154, 229
EheI	GGCGCC	3 cut(s)	121, 154, 229
FaeI	CATG	3 cut(s)	259, 379, 394
FaiI	YATR	8 cut(s)	164, 215, 257, 377, 392, 617, 744, 756
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	3 cut(s)	255, 375, 390
FauI	CCCGC	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	2 cut(s)	274, 682
FriOI	GRGCYC	2 cut(s)	41, 330
Fsp4HI	GCNGC	1 cut(s)	500
GlaI	GCGC	8 cut(s)	68, 83, 121, 154, 229, 277, 531, 551
GluI	GCNGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	329
HaeII	RGCGCY	3 cut(s)	123, 156, 231
HaeIII	GGCC	5 cut(s)	92, 167, 207, 328, 333
HapII	CCGG	9 cut(s)	93, 117, 156, 204, 265, 300, 330, 334, 621
HgaI	GACGC	2 cut(s)	73, 343
HhaI	GCGC	8 cut(s)	69, 84, 122, 155, 230, 278, 532, 552
Hin1I	GRCGYC	3 cut(s)	120, 153, 228
Hin1II	CATG	3 cut(s)	259, 379, 394
Hin6I	GCGC	8 cut(s)	67, 82, 120, 153, 228, 276, 530, 550
HinP1I	GCGC	8 cut(s)	67, 82, 120, 153, 228, 276, 530, 550
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	680, 707
HinfI	GANTC	5 cut(s)	199, 242, 314, 492, 557
HpaII	CCGG	9 cut(s)	93, 117, 156, 204, 265, 300, 330, 334, 621
HphI	GGTGA	2 cut(s)	416, 502
Hpy166II	GTNNAC	5 cut(s)	270, 364, 388, 439, 483
Hpy188I	TCNGA	1 cut(s)	12
Hpy8I	GTNNAC	5 cut(s)	270, 364, 388, 439, 483
Hpy99I	CGWCG	7 cut(s)	74, 89, 104, 152, 359, 362, 386
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	2 cut(s)	669, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	523, 617, 626
Hsp92I	GRCGYC	3 cut(s)	120, 153, 228
Hsp92II	CATG	3 cut(s)	259, 379, 394
HspAI	GCGC	8 cut(s)	67, 82, 120, 153, 228, 276, 530, 550
KasI	GGCGCC	3 cut(s)	119, 152, 227
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	216, 258, 393, 612
LmnI	GCTCC	2 cut(s)	36, 104
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	2 cut(s)	663, 704
MabI	ACCWGGT	1 cut(s)	422
MaeIII	GTNAC	2 cut(s)	54, 733
MalI	GATC	4 cut(s)	218, 260, 395, 614
MboI	GATC	4 cut(s)	216, 258, 393, 612
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	41, 330, 528
MluCI	AATT	4 cut(s)	6, 26, 159, 210
Mly113I	GGCGCC	3 cut(s)	120, 153, 228
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	35, 637
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	2 cut(s)	254, 447
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	9 cut(s)	93, 117, 156, 204, 265, 300, 330, 334, 621
MspR9I	CCNGG	4 cut(s)	204, 330, 347, 424
MvaI	CCWGG	2 cut(s)	347, 424
MvnI	CGCG	5 cut(s)	69, 84, 276, 530, 552
MwoI	GCNNNNNNNGC	3 cut(s)	523, 617, 626
NaeI	GCCGGC	1 cut(s)	94
NarI	GGCGCC	3 cut(s)	120, 153, 228
NciI	CCSGG	2 cut(s)	204, 330
NdeII	GATC	4 cut(s)	216, 258, 393, 612
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	259, 379, 394
NlaIV	GGNNCC	8 cut(s)	38, 121, 154, 229, 328, 338, 421, 437
NmeAIII	GCCGAG	1 cut(s)	351
NspI	RCATGY	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	447
PaeI	GCATGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	4 cut(s)	199, 242, 492, 557
PflFI	GACNNNGTC	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	1 cut(s)	308
PluTI	GGCGCC	3 cut(s)	123, 156, 231
PpsI	GAGTC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	345, 422
PspGI	CCWGG	2 cut(s)	345, 422
PspN4I	GGNNCC	8 cut(s)	38, 121, 154, 229, 328, 338, 421, 437
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	7 cut(s)	166, 326, 327, 420, 436, 483, 688
PspPPI	RGGWCCY	1 cut(s)	420
PsyI	GACNNNGTC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	254, 447
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	1 cut(s)	500
Sau3AI	GATC	4 cut(s)	216, 258, 393, 612
Sau96I	GGNCC	7 cut(s)	166, 326, 327, 420, 436, 483, 688
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	4 cut(s)	204, 330, 347, 424
SduI	GDGCHC	3 cut(s)	41, 330, 528
SetI	ASST	9 cut(s)	109, 135, 342, 351, 372, 425, 684, 711, 779
SexAI	ACCWGGT	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	663, 704
SfoI	GGCGCC	3 cut(s)	121, 154, 229
SinI	GGWCC	4 cut(s)	420, 436, 483, 688
SmiMI	CAYNNNNRTG	2 cut(s)	254, 447
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	4 cut(s)	6, 26, 159, 210
SsiI	CCGC	6 cut(s)	15, 34, 50, 177, 486, 596
SspDI	GGCGCC	3 cut(s)	119, 152, 227
StyD4I	CCNGG	4 cut(s)	202, 328, 345, 422
TaaI	ACNGT	2 cut(s)	669, 761
TaqI	TCGA	3 cut(s)	87, 99, 252
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	4 cut(s)	6, 26, 159, 210
TfiI	GAWTC	4 cut(s)	199, 242, 492, 557
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseI	GCWGC	1 cut(s)	499
TspGWI	ACGGA	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	424
VpaK11BI	GGWCC	4 cut(s)	420, 436, 483, 688
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.