FvH4_6g46060

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
35211648 .. 35215356
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46060.t2

Sequence Viewer

Length: 1416 bp
ATGACAATTGGGAATGTTGCACCAAAGAAGGAGAGGAAGTCAAGGAAGAACAAAGCAATTGTTGATGAGAATGCTCCTTTGTTGCCCAAATGTGGGGAAGATGGTGGGTTTGATGAGTTTAATGGAGCCTCCTTTACTGGGGCAGTTTTCAACTTATCAACCACAATTGTTGGTGCTGGAATCATGGCTTTGCCTGCAACCATGAAAGTGTTGGGTCTTGGTCTTGGGATTACCATGATCATATTTATGGCCTTCTTGACTGAGGCTTCAATTGAGCTGATACTCAGGTTCAGCCGAGCTGGAAAGTCTTCTTCTTATGGAGGCCTCATGGGGGATGCTTTTGGAAAATATGGGAAAATTTTGTTGCAGGTAGCTGTGTTAGTCAACAATCTTGGTGTCCTCATTGTGTACATGATCATTATTGCAATCTTGTACTGCTTATGTGAAGGTGATGTGCTCTCCGGAACGTCTTCAAGTGAAGGCCACCACGCAGGTGTACTTGAAGGATGGTTTGGAGTACATTGGTGGACAGGGCGTGCCATTGTTCTTCTTGTAACAACACTTGGAATCTTTGCTCCATTGGCAAGCTTTAAACGAATCGATTCGTTGAGCTTCACGTCTGCCTTATCCGTTGGCCTAGCAGTTGTGTTTCTTGTTATTACTGTTGGAATTACAGTGATCAAGTTGATTGATGGCAGTATTGGAATGCCCAGGTTGCTACCTGATGTTAGTGATGTTTCATCATTCATCAAATGCTTCACTGTAGTCCCTGTACTCGTCACTGCCTACATCTGTCACTACAATGTTCATAGCATTGACAATGAACTTGAGGACTCCACACAGATAAGAGGGGTTGTGCAATCGTCACTTGCTCTGTGCTCATCTGTATACATAATGACAAGCCTTTTTGGGTTCCTTCTATTTGGGGATGGGACTCTTGACGATGTGCTTGCTAACTTCGATGCTGACCTTGGCATTCCTTATGGTTCCTTCCTTAATGATGCTGTCCGTGTCAGTTATGCCGCTCACCTTATGCTTGTGTTTCCTGTTGTCTTCTTCCCATTGCGGCTCAACTTGGATGGCCTCCTCTTTTCCTCTTCAAGGCCTTTGGTTCTCAGCAACATGAGATTTACACTGGTCACAGTTGGGCTGATTGGAATAATCTTCTTGGGTGCAAACTTTATTCCCAGCATCTGGGATGCTTTCCAGTTCACTGGAGCAACTGCTGCTGTTTGCATCGGGTTCATCTTCCCTGCTGCAATTACTCTCAAGGATCGACACAGCATAGCAACAAAGAAGGATAAGATCTTGAGCATTGTCATGATTGTCCTTGCTGTATTCTCAAACGTGGTGGCAATATATAGCGATGCCTATGCCTTGTTCAAGAATGCCAAGACTCCATCACCGCGTGAATGA

Protein Analysis

472

Amino Acids

50.49

Weight (kDa)

6.66

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 43 - 447 3.4e-53 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 44 - 273 6.2e-09 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 482
Acc36I ACCTGC 2 cut(s) 358, 482
AccB7I CCANNNNNTGG 1 cut(s) 1194
AccBSI CCGCTC 1 cut(s) 1025
AccI GTMKAC 1 cut(s) 888
AccII CGCG 1 cut(s) 1408
AccIII TCCGGA 1 cut(s) 461
AciI CCGC 3 cut(s) 1023, 1066, 1406
AclWI GGATC 1 cut(s) 1281
AcsI RAATTY 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 1409
AfaI GTAC 5 cut(s) 410, 434, 498, 519, 774
AfiI CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1101, 1194
AgsI TTSAA 6 cut(s) 151, 270, 474, 503, 1101, 1384
AjiI CACGTC 1 cut(s) 618
AjnI CCWGG 1 cut(s) 710
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AleI CACNNNNGTG 1 cut(s) 492
AluBI AGCT 5 cut(s) 277, 299, 374, 588, 612
AluI AGCT 5 cut(s) 277, 299, 374, 588, 612
Alw21I GWGCWC 2 cut(s) 459, 881
AlwI GGATC 1 cut(s) 1281
AlwNI CAGNNNCTG 1 cut(s) 1194
Aor13HI TCCGGA 1 cut(s) 461
AoxI GGCC 6 cut(s) 249, 322, 481, 634, 1081, 1103
ApeKI GCWGC 2 cut(s) 1226, 1256
ApoI RAATTY 1 cut(s) 357
Asp700I GAANNNNTTC 3 cut(s) 307, 469, 601
AsuHPI GGTGA 3 cut(s) 461, 1019, 1395
BaeI ACNNNNGTAYC 2 cut(s) 272, 305
BbsI GAAGAC 3 cut(s) 300, 462, 1045
Bbv12I GWGCWC 2 cut(s) 459, 881
BbvI GCAGC 2 cut(s) 1213, 1243
BccI CCATC 6 cut(s) 95, 501, 686, 923, 1073, 1408
BcgI CGANNNNNNTGC 4 cut(s) 932, 966, 1355, 1389
BciT130I CCWGG 1 cut(s) 712
BclI TGATCA 3 cut(s) 237, 414, 678
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 762
BfuAI ACCTGC 2 cut(s) 358, 482
BglII AGATCT 1 cut(s) 1305
BisI GCNGC 4 cut(s) 1023, 1067, 1227, 1257
BlsI GCNGC 4 cut(s) 1024, 1068, 1228, 1258
Bme1390I CCNGG 1 cut(s) 712
BmgBI CACGTC 1 cut(s) 618
BmiI GGNNCC 3 cut(s) 127, 914, 988
BmrFI CCNGG 1 cut(s) 712
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 7 cut(s) 325, 952, 991, 1189, 1200, 1245, 1357
BmuI ACTGGG 1 cut(s) 147
BpiI GAAGAC 3 cut(s) 300, 462, 1045
BpmI CTGGAG 1 cut(s) 1236
BpuEI CTTGAG 3 cut(s) 848, 1253, 1330
Bsa29I ATCGAT 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 710, 970
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1101, 1194
Bse1I ACTGG 4 cut(s) 142, 1140, 1207, 1219
Bse3DI GCAATG 1 cut(s) 1061
BseAI TCCGGA 1 cut(s) 461
BseBI CCWGG 1 cut(s) 712
BseCI ATCGAT 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 710, 970
BseGI GGATG 5 cut(s) 340, 512, 934, 1084, 1204
BseLI CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1101, 1194
BseMI GCAATG 1 cut(s) 1061
BseMII CTCAG 3 cut(s) 252, 298, 1129
BseNI ACTGG 4 cut(s) 142, 1140, 1207, 1219
BseRI GAGGAG 1 cut(s) 1076
BseXI GCAGC 2 cut(s) 1213, 1243
BseYI CCCAGC 1 cut(s) 1187
Bsh1236I CGCG 1 cut(s) 1408
BshFI GGCC 6 cut(s) 251, 324, 483, 636, 1083, 1105
BshVI ATCGAT 1 cut(s) 600
BsiHKAI GWGCWC 2 cut(s) 459, 881
BsiSI CCGG 1 cut(s) 462
BslFI GGGAC 2 cut(s) 752, 946
BslI CCNNNNNNNGG 6 cut(s) 92, 93, 138, 331, 1101, 1194
BsmFI GGGAC 2 cut(s) 752, 946
BsmI GAATGC 4 cut(s) 76, 711, 975, 1393
BsnI GGCC 6 cut(s) 251, 324, 483, 636, 1083, 1105
Bsp1286I GDGCHC 2 cut(s) 459, 881
Bsp13I TCCGGA 1 cut(s) 461
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 5 cut(s) 237, 414, 678, 1273, 1305
BspACI CCGC 3 cut(s) 1023, 1066, 1406
BspANI GGCC 6 cut(s) 251, 324, 483, 636, 1083, 1105
BspCNI CTCAG 3 cut(s) 253, 297, 1128
BspDI ATCGAT 1 cut(s) 600
BspEI TCCGGA 1 cut(s) 461
BspFNI CGCG 1 cut(s) 1408
BspHI TCATGA 1 cut(s) 1320
BspLI GGNNCC 3 cut(s) 127, 914, 988
BspMI ACCTGC 2 cut(s) 358, 482
BspPI GGATC 1 cut(s) 1281
BsrBI CCGCTC 1 cut(s) 1025
BsrDI GCAATG 1 cut(s) 1061
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 4 cut(s) 142, 1140, 1207, 1219
BssECI CCNNGG 2 cut(s) 710, 970
BssMI GATC 5 cut(s) 237, 414, 678, 1273, 1305
BssNAI GTATAC 1 cut(s) 889
BssT1I CCWWGG 1 cut(s) 970
Bst1107I GTATAC 1 cut(s) 889
Bst2UI CCWGG 1 cut(s) 712
Bst4CI ACNGT 4 cut(s) 664, 676, 763, 1144
Bst6I CTCTTC 1 cut(s) 1102
BstAPI GCANNNNNTGC 1 cut(s) 1226
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 4 cut(s) 195, 537, 586, 951
BstDEI CTNAG 3 cut(s) 261, 284, 1115
BstENI CCTNNNNNAGG 1 cut(s) 1099
BstF5I GGATG 5 cut(s) 340, 512, 934, 1084, 1204
BstFNI CGCG 1 cut(s) 1408
BstKTI GATC 5 cut(s) 240, 417, 681, 1276, 1308
BstMBI GATC 5 cut(s) 237, 414, 678, 1273, 1305
BstMWI GCNNNNNNNGC 4 cut(s) 194, 581, 715, 1226
BstNI CCWGG 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 710
BstSFI CTRYAG 1 cut(s) 762
BstUI CGCG 1 cut(s) 1408
BstV1I GCAGC 2 cut(s) 1213, 1243
BstV2I GAAGAC 3 cut(s) 300, 462, 1045
BstX2I RGATCY 1 cut(s) 1305
BstXI CCANNNNNNTGG 1 cut(s) 1214
BstYI RGATCY 1 cut(s) 1305
BstZ17I GTATAC 1 cut(s) 889
Bsu15I ATCGAT 1 cut(s) 600
BsuRI GGCC 6 cut(s) 251, 324, 483, 636, 1083, 1105
BsuTUI ATCGAT 1 cut(s) 600
BtgZI GCGATG 1 cut(s) 1380
BtrI CACGTC 1 cut(s) 618
BtsCI GGATG 5 cut(s) 340, 512, 934, 1084, 1204
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 5 cut(s) 681, 759, 780, 1133, 1212
BveI ACCTGC 2 cut(s) 358, 482
Cac8I GCNNGC 4 cut(s) 195, 537, 586, 951
CaiI CAGNNNCTG 1 cut(s) 1194
CciI TCATGA 1 cut(s) 1320
ClaI ATCGAT 1 cut(s) 600
Csp6I GTAC 5 cut(s) 409, 433, 497, 518, 773
CspCI CAANNNNNGTGG 4 cut(s) 151, 186, 1332, 1367
CviAII CATG 7 cut(s) 184, 202, 235, 328, 412, 1123, 1321
CviQI GTAC 5 cut(s) 409, 433, 497, 518, 773
DdeI CTNAG 3 cut(s) 261, 284, 1115
DpnI GATC 5 cut(s) 239, 416, 680, 1275, 1307
DpnII GATC 5 cut(s) 237, 414, 678, 1273, 1305
DraI TTTAAA 1 cut(s) 592
DraIII CACNNNGTG 1 cut(s) 1409
Eam1104I CTCTTC 1 cut(s) 1102
EarI CTCTTC 1 cut(s) 1102
Eco130I CCWWGG 1 cut(s) 970
Eco147I AGGCCT 2 cut(s) 324, 1105
EcoNI CCTNNNNNAGG 1 cut(s) 1099
EcoRII CCWGG 1 cut(s) 710
EcoT14I CCWWGG 1 cut(s) 970
ErhI CCWWGG 1 cut(s) 970
FaeI CATG 7 cut(s) 187, 205, 238, 331, 415, 1126, 1324
FaqI GGGAC 2 cut(s) 752, 946
FatI CATG 7 cut(s) 183, 201, 234, 327, 411, 1122, 1320
FbaI TGATCA 3 cut(s) 237, 414, 678
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 4 cut(s) 1023, 1067, 1227, 1257
FokI GGATG 5 cut(s) 347, 519, 941, 1091, 1211
Fsp4HI GCNGC 4 cut(s) 1023, 1067, 1227, 1257
FspBI CTAG 1 cut(s) 638
GluI GCNGC 4 cut(s) 1023, 1067, 1227, 1257
GsaI CCCAGC 1 cut(s) 1191
GsuI CTGGAG 1 cut(s) 1236
HaeIII GGCC 6 cut(s) 251, 324, 483, 636, 1083, 1105
HapII CCGG 1 cut(s) 462
Hin1II CATG 7 cut(s) 187, 205, 238, 331, 415, 1126, 1324
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 586
HinfI GANTC 7 cut(s) 180, 567, 597, 602, 833, 934, 1396
HpaII CCGG 1 cut(s) 462
HphI GGTGA 3 cut(s) 461, 1019, 1395
Hpy166II GTNNAC 6 cut(s) 385, 409, 497, 528, 889, 1212
Hpy188III TCNNGA 6 cut(s) 256, 462, 938, 1309, 1321, 1384
Hpy8I GTNNAC 6 cut(s) 385, 409, 497, 528, 889, 1212
HpyAV CCTTC 8 cut(s) 22, 262, 440, 473, 497, 926, 1000, 1291
HpyCH4III ACNGT 4 cut(s) 664, 676, 763, 1144
HpyCH4IV ACGT 3 cut(s) 467, 617, 1347
HpyCH4V TGCA 8 cut(s) 20, 197, 367, 425, 859, 1175, 1236, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 581, 715, 1226
HpyF3I CTNAG 3 cut(s) 261, 284, 1115
HpySE526I ACGT 3 cut(s) 467, 617, 1347
Hsp92II CATG 7 cut(s) 187, 205, 238, 331, 415, 1126, 1324
Kpn2I TCCGGA 1 cut(s) 461
Ksp22I TGATCA 3 cut(s) 237, 414, 678
Kzo9I GATC 5 cut(s) 237, 414, 678, 1273, 1305
LmnI GCTCC 4 cut(s) 79, 125, 580, 1217
Lsp1109I GCAGC 2 cut(s) 1213, 1243
LweI GCATC 7 cut(s) 325, 952, 991, 1189, 1200, 1245, 1357
MaeI CTAG 1 cut(s) 638
MaeII ACGT 3 cut(s) 467, 617, 1347
MaeIII GTNAC 5 cut(s) 553, 778, 794, 864, 1138
MalI GATC 5 cut(s) 239, 416, 680, 1275, 1307
MbiI CCGCTC 1 cut(s) 1025
MboI GATC 5 cut(s) 237, 414, 678, 1273, 1305
MfeI CAATTG 4 cut(s) 6, 57, 165, 270
MflI RGATCY 1 cut(s) 1305
MhlI GDGCHC 2 cut(s) 459, 881
MluCI AATT 7 cut(s) 6, 57, 165, 270, 357, 669, 1260
MlyI GAGTC 3 cut(s) 827, 928, 1390
MmeI TCCRAC 1 cut(s) 646
MroI TCCGGA 1 cut(s) 461
MroXI GAANNNNTTC 3 cut(s) 307, 469, 601
MseI TTAA 3 cut(s) 120, 591, 996
MslI CAYNNNNRTG 5 cut(s) 206, 245, 492, 801, 1319
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 712
MunI CAATTG 4 cut(s) 6, 57, 165, 270
Mva1269I GAATGC 4 cut(s) 76, 711, 975, 1393
MvaI CCWGG 1 cut(s) 712
MvnI CGCG 1 cut(s) 1408
MwoI GCNNNNNNNGC 4 cut(s) 194, 581, 715, 1226
NdeII GATC 5 cut(s) 237, 414, 678, 1273, 1305
NlaIII CATG 7 cut(s) 187, 205, 238, 331, 415, 1126, 1324
NlaIV GGNNCC 3 cut(s) 127, 914, 988
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 4 cut(s) 778, 794, 864, 1138
OliI CACNNNNGTG 1 cut(s) 492
PagI TCATGA 1 cut(s) 1320
PaqCI CACCTGC 1 cut(s) 482
PceI AGGCCT 2 cut(s) 324, 1105
PctI GAATGC 4 cut(s) 76, 711, 975, 1393
PdmI GAANNNNTTC 3 cut(s) 307, 469, 601
PfeI GAWTC 4 cut(s) 180, 567, 597, 602
PflMI CCANNNNNTGG 1 cut(s) 1194
PkrI GCNGC 4 cut(s) 1024, 1068, 1228, 1258
PleI GAGTC 3 cut(s) 827, 928, 1390
PpsI GAGTC 3 cut(s) 827, 928, 1390
Psp6I CCWGG 1 cut(s) 710
PspFI CCCAGC 1 cut(s) 1187
PspGI CCWGG 1 cut(s) 710
PspN4I GGNNCC 3 cut(s) 127, 914, 988
PstNI CAGNNNCTG 1 cut(s) 1194
PsuI RGATCY 1 cut(s) 1305
RsaI GTAC 5 cut(s) 410, 434, 498, 519, 774
RsaNI GTAC 5 cut(s) 409, 433, 497, 518, 773
RseI CAYNNNNRTG 5 cut(s) 206, 245, 492, 801, 1319
SaqAI TTAA 3 cut(s) 120, 591, 996
SatI GCNGC 4 cut(s) 1023, 1067, 1227, 1257
Sau3AI GATC 5 cut(s) 237, 414, 678, 1273, 1305
SchI GAGTC 3 cut(s) 827, 928, 1390
ScrFI CCNGG 1 cut(s) 712
SduI GDGCHC 2 cut(s) 459, 881
SfaNI GCATC 7 cut(s) 325, 952, 991, 1189, 1200, 1245, 1357
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 5 cut(s) 206, 245, 492, 801, 1319
SmlI CTYRAG 3 cut(s) 827, 1268, 1309
SmoI CTYRAG 3 cut(s) 827, 1268, 1309
Sse9I AATT 7 cut(s) 6, 57, 165, 270, 357, 669, 1260
SseBI AGGCCT 2 cut(s) 324, 1105
SsiI CCGC 3 cut(s) 1023, 1066, 1406
SspMI CTAG 1 cut(s) 638
StuI AGGCCT 2 cut(s) 324, 1105
StyD4I CCNGG 1 cut(s) 710
StyI CCWWGG 1 cut(s) 970
TaaI ACNGT 4 cut(s) 664, 676, 763, 1144
TaiI ACGT 3 cut(s) 470, 620, 1350
TaqI TCGA 3 cut(s) 600, 960, 1276
TasI AATT 7 cut(s) 6, 57, 165, 270, 357, 669, 1260
TatI WGTACW 5 cut(s) 408, 432, 496, 517, 772
TauI GCSGC 2 cut(s) 1025, 1069
TfiI GAWTC 4 cut(s) 180, 567, 597, 602
Tru1I TTAA 3 cut(s) 120, 591, 996
Tru9I TTAA 3 cut(s) 120, 591, 996
TscAI CASTG 5 cut(s) 681, 766, 787, 1140, 1219
TseFI GTSAC 4 cut(s) 778, 794, 864, 1138
TseI GCWGC 2 cut(s) 1226, 1256
Tsp45I GTSAC 4 cut(s) 778, 794, 864, 1138
TspDTI ATGAA 6 cut(s) 218, 729, 736, 797, 837, 1234
TspGWI ACGGA 2 cut(s) 619, 998
TspRI CASTG 5 cut(s) 681, 766, 787, 1140, 1219
Van91I CCANNNNNTGG 1 cut(s) 1194
XagI CCTNNNNNAGG 1 cut(s) 1099
XapI RAATTY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 888
XmnI GAANNNNTTC 3 cut(s) 307, 469, 601
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.