Rmu_co8348867.1_g000001

sodium-coupled neutral amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8348867.1
OG0000616
Physical Location & Seq
Reverse (-)
1 .. 676
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8348867.1_g000001.1.cds

Sequence Viewer

Length: 556 bp
atgacaattccgaccgccgacaggaaattcaggcggagccccaaagccccgctgttaccccaaaagcgcgacgacaatgagcgcgtcgaggccggcttcgacggagcttcgttctccggcgccgtgttcaacctctccaccacaatcgtcggcgccggaattatggccctgccgtccgccgtcaagcaactggggttgattcccggcctaattatgatcgtattgggcgccgtgctgaccgaatcttccatcgacatgatcctccggttcacacgcgcctccaagacatcctcgtattccggtctggtcggcgactcgttcggtgggcccggccggaacctcctccaggtctgcgtcgtcgtcaacaacctcggcatgctcgtcgtctacatgatcatcatcggtgatgtgctgtcggggacctggtcgggtggggtccaccactcgggtgtgatggaggaatggtttggtcagcgttggtggaccgcacgattctcgctgctacttttcaccacgctctctgtgctcgcgcctcttatttctttcaagcgcgtgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04724 ko04727 ko04974 map04724 map04727 map04974
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

185

Amino Acids

19.96

Weight (kDa)

9.79

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30390 AT3G30390 AT3G30390 AT5G38820 AT5G38820 AT5G38820
fragaria_vesca FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_4g28960 FvH4_6g46060 FvH4_6g46060 FvH4_6g46080
malus_domestica MD09G1077200.v1.1 MD09G1077400.v1.1 MD15G1064300.v1.1 MD16G1053900.v1.1 MD17G1067600.v1.1 MD17G1067800.v1.1
prunus_persica Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G418300_v2.0.a1 Prupe.3G246600_v2.0.a1 Prupe.3G246800_v2.0.a1 Prupe.3G246900_v2.0.a1
pyrus_communis pycom09g00430 pycom09g00450 pycom15g06100 pycom16g04690 pycom17g06820
rosa_chinensis RchiOBHm_Chr2g0164381 RchiOBHm_Chr2g0164401 RchiOBHm_Chr4g0437101 RchiOBHm_Chr6g0310121
rosa_laevigata RLG00000006468 RLG00000010508 RLG00000021456 RLG00000021458
rosa_multiflora Rmu_co8348867.1_g000001 Rmu_sc0000294.1_g000029 Rmu_sc0009487.1_g000003 Rmu_sc0018759.1_g000001 Rmu_sc0021401.1_g000003 Rmu_ssc0000006.1_g000009
rosa_roxburghii Rroxscaffold_2G00086590 Rroxscaffold_2G00086610 Rroxscaffold_5G00378170 Rroxscaffold_7G00158840
rosa_rugosa Rorug02G0508200 Rorug02G0508300 Rorug04G0298000 Rorug06G0377600
rosa_samantha Rh2AG576200 Rh2AG576400 Rh2BG587200 Rh2BG587400 Rh2CG558000 Rh2CG558200 Rh2DG596900 Rh2DG597200 Rh4AG352800 Rh4BG362300 Rh4CG376500 Rh4DG356300 Rh6AG491600 Rh6BG501000 Rh6CG506000 Rh6DG492100
rosa_wichuraiana Rw2G047720 Rw2G047740 Rw2G047820 Rw2G047840 Rw4G030890 Rw6G042770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 119, 152, 227
AccI GTMKAC 1 cut(s) 387
AccII CGCG 5 cut(s) 69, 84, 276, 530, 552
AciI CCGC 5 cut(s) 15, 34, 50, 177, 486
AclWI GGATC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 26
AcyI GRCGYC 3 cut(s) 120, 153, 228
AfiI CCNNNNNNNGG 3 cut(s) 21, 346, 445
AgsI TTSAA 2 cut(s) 130, 547
AjnI CCWGG 2 cut(s) 345, 422
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 1 cut(s) 528
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 5 cut(s) 90, 165, 205, 326, 331
ApaI GGGCCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 499
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 8 cut(s) 69, 84, 122, 155, 230, 278, 532, 552
AspS9I GGNCC 6 cut(s) 166, 326, 327, 420, 436, 483
AsuC2I CCSGG 2 cut(s) 204, 330
AsuHPI GGTGA 2 cut(s) 416, 502
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 3 cut(s) 420, 436, 483
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 3 cut(s) 119, 152, 227
BanII GRGCYC 2 cut(s) 41, 330
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 486
BccI CCATC 2 cut(s) 257, 448
BceAI ACGGC 4 cut(s) 107, 157, 164, 215
BcgI CGANNNNNNTGC 4 cut(s) 364, 398, 477, 511
BciT130I CCWGG 2 cut(s) 347, 424
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 204, 330
BfoI RGCGCY 3 cut(s) 123, 156, 231
BisI GCNGC 1 cut(s) 500
BlsI GCNGC 1 cut(s) 501
Bme1390I CCNGG 4 cut(s) 204, 330, 347, 424
Bme18I GGWCC 3 cut(s) 420, 436, 483
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 6 cut(s) 166, 326, 327, 420, 436, 483
BmiI GGNNCC 8 cut(s) 38, 121, 154, 229, 328, 338, 421, 437
BmrFI CCNGG 4 cut(s) 204, 330, 347, 424
BmrI ACTGGG 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 2 cut(s) 204, 330
BsaBI GATNNNNATC 1 cut(s) 398
BsaHI GRCGYC 3 cut(s) 120, 153, 228
BsaJI CCNNGG 1 cut(s) 370
BsaWI WCCGGW 2 cut(s) 264, 299
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 346, 445
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 398
BseBI CCWGG 2 cut(s) 347, 424
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 287
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 21, 346, 445
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 1 cut(s) 330
BseX3I CGGCCG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 486
Bsh1236I CGCG 5 cut(s) 69, 84, 276, 530, 552
Bsh1285I CGRYCG 2 cut(s) 15, 334
BshFI GGCC 5 cut(s) 92, 167, 207, 328, 333
BshNI GGYRCC 3 cut(s) 119, 152, 227
BsiEI CGRYCG 2 cut(s) 15, 334
BsiHKAI GWGCWC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 8 cut(s) 93, 117, 156, 204, 265, 300, 330, 334
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 3 cut(s) 21, 346, 445
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 5 cut(s) 92, 167, 207, 328, 333
BsoBI CYCGRG 1 cut(s) 445
Bsp120I GGGCCC 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 41, 330, 528
Bsp143I GATC 3 cut(s) 216, 258, 393
BspACI CCGC 5 cut(s) 15, 34, 50, 177, 486
BspANI GGCC 5 cut(s) 92, 167, 207, 328, 333
BspFNI CGCG 5 cut(s) 69, 84, 276, 530, 552
BspLI GGNNCC 8 cut(s) 38, 121, 154, 229, 328, 338, 421, 437
BspPI GGATC 1 cut(s) 253
BspT107I GGYRCC 3 cut(s) 119, 152, 227
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 3 cut(s) 216, 258, 393
BssNI GRCGYC 3 cut(s) 120, 153, 228
Bst2UI CCWGG 2 cut(s) 347, 424
BstACI GRCGYC 3 cut(s) 120, 153, 228
BstC8I GCNNGC 3 cut(s) 94, 377, 528
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 5 cut(s) 69, 84, 276, 530, 552
BstH2I RGCGCY 3 cut(s) 123, 156, 231
BstHHI GCGC 8 cut(s) 69, 84, 122, 155, 230, 278, 532, 552
BstKTI GATC 3 cut(s) 219, 261, 396
BstMBI GATC 3 cut(s) 216, 258, 393
BstMCI CGRYCG 2 cut(s) 15, 334
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNI CCWGG 2 cut(s) 347, 424
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 4 cut(s) 202, 328, 345, 422
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 5 cut(s) 69, 84, 276, 530, 552
BstV1I GCAGC 1 cut(s) 486
BstZI CGGCCG 1 cut(s) 331
BsuRI GGCC 5 cut(s) 92, 167, 207, 328, 333
BtsCI GGATG 1 cut(s) 287
Cac8I GCNNGC 3 cut(s) 94, 377, 528
CfoI GCGC 8 cut(s) 69, 84, 122, 155, 230, 278, 532, 552
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 6 cut(s) 166, 326, 327, 420, 436, 483
CseI GACGC 2 cut(s) 73, 343
CsiI ACCWGGT 1 cut(s) 422
CviAII CATG 3 cut(s) 256, 376, 391
CviJI RGCY 9 cut(s) 39, 47, 92, 96, 107, 167, 207, 328, 333
CviKI_1 RGCY 9 cut(s) 39, 47, 92, 96, 107, 167, 207, 328, 333
DinI GGCGCC 3 cut(s) 121, 154, 229
DpnI GATC 3 cut(s) 218, 260, 395
DpnII GATC 3 cut(s) 216, 258, 393
EaeI YGGCCR 1 cut(s) 331
EagI CGGCCG 1 cut(s) 331
EciI GGCGGA 2 cut(s) 49, 166
EclXI CGGCCG 1 cut(s) 331
Eco24I GRGCYC 2 cut(s) 41, 330
Eco47I GGWCC 3 cut(s) 420, 436, 483
Eco52I CGGCCG 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 345, 422
EcoT38I GRGCYC 2 cut(s) 41, 330
EgeI GGCGCC 3 cut(s) 121, 154, 229
EheI GGCGCC 3 cut(s) 121, 154, 229
FaeI CATG 3 cut(s) 259, 379, 394
FaiI YATR 5 cut(s) 164, 215, 257, 377, 392
FaqI GGGAC 1 cut(s) 433
FatI CATG 3 cut(s) 255, 375, 390
FauI CCCGC 1 cut(s) 57
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 500
FokI GGATG 1 cut(s) 274
FriOI GRGCYC 2 cut(s) 41, 330
Fsp4HI GCNGC 1 cut(s) 500
GlaI GCGC 8 cut(s) 68, 83, 121, 154, 229, 277, 531, 551
GluI GCNGC 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 3 cut(s) 123, 156, 231
HaeIII GGCC 5 cut(s) 92, 167, 207, 328, 333
HapII CCGG 8 cut(s) 93, 117, 156, 204, 265, 300, 330, 334
HgaI GACGC 2 cut(s) 73, 343
HhaI GCGC 8 cut(s) 69, 84, 122, 155, 230, 278, 532, 552
Hin1I GRCGYC 3 cut(s) 120, 153, 228
Hin1II CATG 3 cut(s) 259, 379, 394
Hin6I GCGC 8 cut(s) 67, 82, 120, 153, 228, 276, 530, 550
HinP1I GCGC 8 cut(s) 67, 82, 120, 153, 228, 276, 530, 550
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 4 cut(s) 199, 242, 314, 492
HpaII CCGG 8 cut(s) 93, 117, 156, 204, 265, 300, 330, 334
HphI GGTGA 2 cut(s) 416, 502
Hpy166II GTNNAC 5 cut(s) 270, 364, 388, 439, 483
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 5 cut(s) 270, 364, 388, 439, 483
Hpy99I CGWCG 7 cut(s) 74, 89, 104, 152, 359, 362, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
Hsp92I GRCGYC 3 cut(s) 120, 153, 228
Hsp92II CATG 3 cut(s) 259, 379, 394
HspAI GCGC 8 cut(s) 67, 82, 120, 153, 228, 276, 530, 550
KasI GGCGCC 3 cut(s) 119, 152, 227
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 3 cut(s) 216, 258, 393
LmnI GCTCC 2 cut(s) 36, 104
Lsp1109I GCAGC 1 cut(s) 486
MabI ACCWGGT 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 54
MalI GATC 3 cut(s) 218, 260, 395
MboI GATC 3 cut(s) 216, 258, 393
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 3 cut(s) 41, 330, 528
MluCI AATT 4 cut(s) 6, 26, 159, 210
Mly113I GGCGCC 3 cut(s) 120, 153, 228
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 92
MslI CAYNNNNRTG 2 cut(s) 254, 447
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 8 cut(s) 93, 117, 156, 204, 265, 300, 330, 334
MspR9I CCNGG 4 cut(s) 204, 330, 347, 424
MvaI CCWGG 2 cut(s) 347, 424
MvnI CGCG 5 cut(s) 69, 84, 276, 530, 552
MwoI GCNNNNNNNGC 1 cut(s) 523
NaeI GCCGGC 1 cut(s) 94
NarI GGCGCC 3 cut(s) 120, 153, 228
NciI CCSGG 2 cut(s) 204, 330
NdeII GATC 3 cut(s) 216, 258, 393
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 259, 379, 394
NlaIV GGNNCC 8 cut(s) 38, 121, 154, 229, 328, 338, 421, 437
NmeAIII GCCGAG 1 cut(s) 351
NspI RCATGY 1 cut(s) 379
OliI CACNNNNGTG 1 cut(s) 447
PaeI GCATGC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 199, 242, 492
PflFI GACNNNGTC 1 cut(s) 424
PkrI GCNGC 1 cut(s) 501
PleI GAGTC 1 cut(s) 308
PluTI GGCGCC 3 cut(s) 123, 156, 231
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 345, 422
PspGI CCWGG 2 cut(s) 345, 422
PspN4I GGNNCC 8 cut(s) 38, 121, 154, 229, 328, 338, 421, 437
PspOMI GGGCCC 1 cut(s) 326
PspPI GGNCC 6 cut(s) 166, 326, 327, 420, 436, 483
PspPPI RGGWCCY 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 424
RseI CAYNNNNRTG 2 cut(s) 254, 447
SatI GCNGC 1 cut(s) 500
Sau3AI GATC 3 cut(s) 216, 258, 393
Sau96I GGNCC 6 cut(s) 166, 326, 327, 420, 436, 483
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 4 cut(s) 204, 330, 347, 424
SduI GDGCHC 3 cut(s) 41, 330, 528
SetI ASST 6 cut(s) 109, 135, 342, 351, 372, 425
SexAI ACCWGGT 1 cut(s) 422
SfoI GGCGCC 3 cut(s) 121, 154, 229
SinI GGWCC 3 cut(s) 420, 436, 483
SmiMI CAYNNNNRTG 2 cut(s) 254, 447
SphI GCATGC 1 cut(s) 379
Sse9I AATT 4 cut(s) 6, 26, 159, 210
SsiI CCGC 5 cut(s) 15, 34, 50, 177, 486
SspDI GGCGCC 3 cut(s) 119, 152, 227
StyD4I CCNGG 4 cut(s) 202, 328, 345, 422
TaqI TCGA 3 cut(s) 87, 99, 252
TaqII GACCGA 1 cut(s) 254
TasI AATT 4 cut(s) 6, 26, 159, 210
TfiI GAWTC 3 cut(s) 199, 242, 492
TseI GCWGC 1 cut(s) 499
TspGWI ACGGA 1 cut(s) 117
Tth111I GACNNNGTC 1 cut(s) 424
VpaK11BI GGWCC 3 cut(s) 420, 436, 483
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.