pycom09g00450

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
361491 .. 363941
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00450.5

Sequence Viewer

Length: 1386 bp
ATGACAATTGGAAGTCTTCCTCCAAAGAAGGAGAAGAAGTCAAGAAAGCACAAAGGAGTGATTGATGAGAATGCTCCTTTGTTGCCAAAAAAGCAAGTGGAAGATGCAGGGTTTGATGAGTTCAATGGAGCTTCCTTTACTGGGGCAGTGTTTAATTTATCCACCACCATTGTTGGTGCTGGGATCATGGCTCTGCCTGCCACCATGAAAGTGTTAGGCCTTGTCCTTGGGATCTCCATGATCATCTTCATGGCGTTCTTGACCGAGGCATCGATCGAACTGATACTTAGGTTCAGCAGGGCAGGGAAGTCTGCTTCTTATGGAGGTCTTATGGGAGATGCCTTTGGAAAATATGGAAAGATTTTGTTGCAGGTATCGGTTTTAGTCAACAACCTCGGCGTGCTCATTGTCTACATGATTATCATTGGTGATGTGCTTTCTGGAACATCTTCGAGTGGGGTTCACCACGCTGGTGTACTTGAGGGATGGTTTGGAGTACACTGGTGGACTGCGCGATTCATTGTTCTTCTTGTCACTACACTTGGCATATTTGCTCCATTGGCATGCTTTAAGCGAATTGATTCATTGAGCTTCTCATCTGCCCTATCAGTTGCACTAGCAGTTGTATTTCTTGTTATTACCGTTGGAATTACGGTTGTCAAGTTGATCAATCGAAGCATTGCAATGCCCAGATTGCTACCTGATGTTATTGACGTCTCGTCATTCTTCAATCTCTTCACCGTAGTCCCCGTTCTTGTCACTGCATACATCTGTCACTACAATGTCCACAGCATCCACAACGAGCTTGAAGATTCTACGCAGATAAGAGGGGTTGTACAAACCTCGCTTGCTTTATGTTCATCTGTTTACATAATGACAAGCCTTTTTGGGTTCCTCCTATTTGGGGACGGAACTCTTGACGATGTGCTTGCCAACTTCGACACGAACCTTGGCATTCCTTACAGTTCTGTGCTCAATGATGCGGTGCGTGTCAGCTATGCTGCTCACCTTATGCTTGTGTTTCCCATTGTCTTCTTTCCATTGAGGCTCAACTTGGATGGCCTCCTCTTTCCCTCTGCAAGGCCGATGGTTCTGGATAATATGAGATTTGCACTAGTCACCATTGGGCTCATAAGTATTATCTTCTTGGGTGCAAACTTTATACCCAGCATCTGGGATGCTTTCCAGTTCACTGGGGCAACTGCTGCTGTTTGCCTCGGGTTCATTTTCCCGGCTGCAATTACTCTCAAGGATCGACACAACATAGCAACAAAGAAGGACAAAGTCTTGAGTGTTTTCATGATTTTCCTTGCTGTGTTCTCAAACGCGGTGGCCATATACAGCGATGCCTATGCCTTGTTCAAGAACGCATCAAAGCGTGAGTGA

Protein Analysis

462

Amino Acids

49.93

Weight (kDa)

8.75

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 717
Acc36I ACCTGC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 1173
AccI GTMKAC 1 cut(s) 411
AccII CGCG 2 cut(s) 514, 1328
AciI CCGC 2 cut(s) 983, 1328
AclWI GGATC 3 cut(s) 191, 239, 1260
AcoI YGGCCR 1 cut(s) 1332
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 3 cut(s) 477, 498, 837
AfiI CCNNNNNNNGG 4 cut(s) 141, 904, 1080, 1173
AgsI TTSAA 4 cut(s) 124, 730, 809, 1363
AhdI GACNNNNNGTC 1 cut(s) 718
AhlI ACTAGT 1 cut(s) 1114
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 4 cut(s) 131, 591, 805, 996
AluI AGCT 4 cut(s) 131, 591, 805, 996
Alw21I GWGCWC 2 cut(s) 405, 975
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 3 cut(s) 191, 239, 1260
AlwNI CAGNNNCTG 1 cut(s) 1173
Ama87I CYCGRG 1 cut(s) 1217
AoxI GGCC 4 cut(s) 217, 1060, 1082, 1332
ApeKI GCWGC 3 cut(s) 1001, 1205, 1235
Asp700I GAANNNNTTC 2 cut(s) 448, 580
AspLEI GCGC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 1232
AsuHPI GGTGA 5 cut(s) 440, 455, 730, 998, 1111
AvaI CYCGRG 1 cut(s) 1217
BaeI ACNNNNGTAYC 2 cut(s) 275, 308
BalI TGGCCA 1 cut(s) 1334
BanII GRGCYC 1 cut(s) 1131
BbsI GAAGAC 2 cut(s) 8, 1024
Bbv12I GWGCWC 2 cut(s) 405, 975
BbvI GCAGC 3 cut(s) 988, 1192, 1222
BccI CCATC 3 cut(s) 480, 1052, 1081
BcgI CGANNNNNNTGC 4 cut(s) 911, 945, 1334, 1368
BclI TGATCA 2 cut(s) 240, 666
BcnI CCSGG 1 cut(s) 1232
BcoDI GTCTC 1 cut(s) 721
BcuI ACTAGT 1 cut(s) 1114
BfaI CTAG 2 cut(s) 617, 1115
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 3 cut(s) 1002, 1206, 1236
BlsI GCNGC 3 cut(s) 1003, 1207, 1237
Bme1390I CCNGG 1 cut(s) 1232
BmeRI GACNNNNNGTC 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 1217
BmiI GGNNCC 1 cut(s) 893
BmrFI CCNGG 1 cut(s) 1232
BmrI ACTGGG 2 cut(s) 150, 1203
BmsI GCATC 9 cut(s) 94, 278, 328, 801, 970, 1168, 1179, 1336, 1379
BmuI ACTGGG 2 cut(s) 150, 1203
BpiI GAAGAC 2 cut(s) 8, 1024
BpuEI CTTGAG 3 cut(s) 500, 1232, 1309
BpuMI CCSGG 1 cut(s) 1232
Bsa29I ATCGAT 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 5 cut(s) 226, 264, 394, 949, 1216
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 904, 1080, 1173
Bse1I ACTGG 4 cut(s) 145, 506, 1186, 1198
Bse3DI GCAATG 2 cut(s) 678, 690
BseCI ATCGAT 1 cut(s) 272
BseDI CCNNGG 5 cut(s) 226, 264, 394, 949, 1216
BseGI GGATG 4 cut(s) 491, 792, 1063, 1183
BseLI CCNNNNNNNGG 4 cut(s) 141, 904, 1080, 1173
BseMI GCAATG 2 cut(s) 678, 690
BseNI ACTGG 4 cut(s) 145, 506, 1186, 1198
BseRI GAGGAG 1 cut(s) 1055
BseXI GCAGC 3 cut(s) 988, 1192, 1222
BseYI CCCAGC 2 cut(s) 179, 1166
Bsh1236I CGCG 2 cut(s) 514, 1328
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 4 cut(s) 219, 1062, 1084, 1334
BshVI ATCGAT 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 405, 975
BsiHKCI CYCGRG 1 cut(s) 1217
BsiSI CCGG 1 cut(s) 1232
BslFI GGGAC 2 cut(s) 731, 920
BslI CCNNNNNNNGG 4 cut(s) 141, 904, 1080, 1173
BsmAI GTCTC 1 cut(s) 721
BsmBI CGTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 731, 920
BsmI GAATGC 2 cut(s) 76, 954
BsnI GGCC 4 cut(s) 219, 1062, 1084, 1334
BsoBI CYCGRG 1 cut(s) 1217
Bsp1286I GDGCHC 3 cut(s) 405, 975, 1131
Bsp1407I TGTACA 1 cut(s) 835
Bsp143I GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
BspACI CCGC 2 cut(s) 983, 1328
BspANI GGCC 4 cut(s) 219, 1062, 1084, 1334
BspDI ATCGAT 1 cut(s) 272
BspFNI CGCG 2 cut(s) 514, 1328
BspHI TCATGA 1 cut(s) 1299
BspLI GGNNCC 1 cut(s) 893
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 3 cut(s) 191, 239, 1260
BsrDI GCAATG 2 cut(s) 678, 690
BsrGI TGTACA 1 cut(s) 835
BsrI ACTGG 4 cut(s) 145, 506, 1186, 1198
BssECI CCNNGG 5 cut(s) 226, 264, 394, 949, 1216
BssMI GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 2 cut(s) 226, 949
Bst4CI ACNGT 4 cut(s) 643, 655, 742, 965
Bst6I CTCTTC 1 cut(s) 740
BstACI GRCGYC 1 cut(s) 714
BstAPI GCANNNNNTGC 1 cut(s) 1205
BstAUI TGTACA 1 cut(s) 835
BstC8I GCNNGC 5 cut(s) 198, 401, 565, 849, 930
BstDEI CTNAG 1 cut(s) 287
BstENI CCTNNNNNAGG 1 cut(s) 1078
BstF5I GGATG 4 cut(s) 491, 792, 1063, 1183
BstFNI CGCG 2 cut(s) 514, 1328
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 6 cut(s) 186, 234, 243, 276, 669, 1255
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 5 cut(s) 91, 197, 560, 694, 1205
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 1230
BstUI CGCG 2 cut(s) 514, 1328
BstV1I GCAGC 3 cut(s) 988, 1192, 1222
BstV2I GAAGAC 2 cut(s) 8, 1024
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 1193
BstYI RGATCY 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 272
BsuRI GGCC 4 cut(s) 219, 1062, 1084, 1334
BsuTUI ATCGAT 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 1359
BtsCI GGATG 4 cut(s) 491, 792, 1063, 1183
BtsI GCAGTG 2 cut(s) 153, 759
BtsIMutI CAGTG 4 cut(s) 153, 499, 759, 1191
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 5 cut(s) 198, 401, 565, 849, 930
CaiI CAGNNNCTG 1 cut(s) 1173
CciI TCATGA 1 cut(s) 1299
CfoI GCGC 1 cut(s) 514
ClaI ATCGAT 1 cut(s) 272
Csp6I GTAC 3 cut(s) 476, 497, 836
CspCI CAANNNNNGTGG 6 cut(s) 151, 154, 186, 189, 1311, 1346
CviAII CATG 7 cut(s) 187, 205, 238, 250, 415, 564, 1300
CviQI GTAC 3 cut(s) 476, 497, 836
DdeI CTNAG 1 cut(s) 287
DpnI GATC 6 cut(s) 185, 233, 242, 275, 668, 1254
DpnII GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
DriI GACNNNNNGTC 1 cut(s) 718
EaeI YGGCCR 1 cut(s) 1332
Eam1104I CTCTTC 1 cut(s) 740
Eam1105I GACNNNNNGTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 740
Eco130I CCWWGG 2 cut(s) 226, 949
Eco147I AGGCCT 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 1131
Eco88I CYCGRG 1 cut(s) 1217
EcoNI CCTNNNNNAGG 1 cut(s) 1078
EcoT14I CCWWGG 2 cut(s) 226, 949
EcoT38I GRGCYC 1 cut(s) 1131
ErhI CCWWGG 2 cut(s) 226, 949
Esp3I CGTCTC 1 cut(s) 721
FaeI CATG 7 cut(s) 190, 208, 241, 253, 418, 567, 1303
FaqI GGGAC 2 cut(s) 731, 920
FatI CATG 7 cut(s) 186, 204, 237, 249, 414, 563, 1299
FbaI TGATCA 2 cut(s) 240, 666
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 1002, 1206, 1236
FokI GGATG 4 cut(s) 498, 779, 1070, 1190
FriOI GRGCYC 1 cut(s) 1131
Fsp4HI GCNGC 3 cut(s) 1002, 1206, 1236
FspBI CTAG 2 cut(s) 617, 1115
GlaI GCGC 1 cut(s) 513
GluI GCNGC 3 cut(s) 1002, 1206, 1236
GsaI CCCAGC 2 cut(s) 183, 1170
HaeIII GGCC 4 cut(s) 219, 1062, 1084, 1334
HapII CCGG 1 cut(s) 1232
HhaI GCGC 1 cut(s) 514
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 7 cut(s) 190, 208, 241, 253, 418, 567, 1303
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 3 cut(s) 516, 581, 812
HpaII CCGG 1 cut(s) 1232
HphI GGTGA 5 cut(s) 440, 455, 730, 998, 1111
Hpy166II GTNNAC 9 cut(s) 388, 412, 463, 476, 499, 507, 787, 868, 1191
Hpy188III TCNNGA 8 cut(s) 42, 259, 441, 917, 1094, 1288, 1300, 1363
Hpy8I GTNNAC 9 cut(s) 388, 412, 463, 476, 499, 507, 787, 868, 1191
HpyAV CCTTC 2 cut(s) 22, 1270
HpyCH4III ACNGT 4 cut(s) 643, 655, 742, 965
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 9 cut(s) 107, 370, 614, 683, 764, 1079, 1112, 1154, 1238
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 197, 560, 694, 1205
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 714
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 7 cut(s) 190, 208, 241, 253, 418, 567, 1303
HspAI GCGC 1 cut(s) 512
Ksp22I TGATCA 2 cut(s) 240, 666
Kzo9I GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
LmnI GCTCC 3 cut(s) 79, 128, 559
Lsp1109I GCAGC 3 cut(s) 988, 1192, 1222
LweI GCATC 9 cut(s) 94, 278, 328, 801, 970, 1168, 1179, 1336, 1379
MaeI CTAG 2 cut(s) 617, 1115
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 4 cut(s) 532, 757, 773, 1117
MalI GATC 6 cut(s) 185, 233, 242, 275, 668, 1254
MboI GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 3 cut(s) 405, 975, 1131
MlsI TGGCCA 1 cut(s) 1334
MluCI AATT 5 cut(s) 6, 154, 576, 648, 1239
MluNI TGGCCA 1 cut(s) 1334
MmeI TCCRAC 1 cut(s) 625
Mox20I TGGCCA 1 cut(s) 1334
MroXI GAANNNNTTC 2 cut(s) 448, 580
MscI TGGCCA 1 cut(s) 1334
MseI TTAA 2 cut(s) 153, 570
MslI CAYNNNNRTG 6 cut(s) 209, 248, 471, 562, 683, 780
Msp20I TGGCCA 1 cut(s) 1334
MspI CCGG 1 cut(s) 1232
MspR9I CCNGG 1 cut(s) 1232
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 2 cut(s) 76, 954
MvnI CGCG 2 cut(s) 514, 1328
MwoI GCNNNNNNNGC 5 cut(s) 91, 197, 560, 694, 1205
NciI CCSGG 1 cut(s) 1232
NdeII GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
NlaIII CATG 7 cut(s) 190, 208, 241, 253, 418, 567, 1303
NlaIV GGNNCC 1 cut(s) 893
NmeAIII GCCGAG 1 cut(s) 375
NmuCI GTSAC 4 cut(s) 532, 757, 773, 1117
NspI RCATGY 1 cut(s) 567
OliI CACNNNNGTG 1 cut(s) 471
PaeI GCATGC 1 cut(s) 567
PagI TCATGA 1 cut(s) 1299
PceI AGGCCT 1 cut(s) 219
PctI GAATGC 2 cut(s) 76, 954
PdmI GAANNNNTTC 2 cut(s) 448, 580
PfeI GAWTC 3 cut(s) 516, 581, 812
PflFI GACNNNGTC 1 cut(s) 1283
PflMI CCANNNNNTGG 1 cut(s) 1173
PkrI GCNGC 3 cut(s) 1003, 1207, 1237
Ple19I CGATCG 1 cut(s) 276
PspFI CCCAGC 2 cut(s) 179, 1166
PspN4I GGNNCC 1 cut(s) 893
PsrI GAACNNNNNNTAC 2 cut(s) 735, 767
PstNI CAGNNNCTG 1 cut(s) 1173
PsuI RGATCY 1 cut(s) 231
PsyI GACNNNGTC 1 cut(s) 1283
PvuI CGATCG 1 cut(s) 276
RsaI GTAC 3 cut(s) 477, 498, 837
RsaNI GTAC 3 cut(s) 476, 497, 836
RseI CAYNNNNRTG 6 cut(s) 209, 248, 471, 562, 683, 780
SaqAI TTAA 2 cut(s) 153, 570
SatI GCNGC 3 cut(s) 1002, 1206, 1236
Sau3AI GATC 6 cut(s) 183, 231, 240, 273, 666, 1252
ScrFI CCNGG 1 cut(s) 1232
SduI GDGCHC 3 cut(s) 405, 975, 1131
SfaNI GCATC 9 cut(s) 94, 278, 328, 801, 970, 1168, 1179, 1336, 1379
SmiMI CAYNNNNRTG 6 cut(s) 209, 248, 471, 562, 683, 780
SmlI CTYRAG 3 cut(s) 479, 1247, 1288
SmoI CTYRAG 3 cut(s) 479, 1247, 1288
SpeI ACTAGT 1 cut(s) 1114
SphI GCATGC 1 cut(s) 567
Sse9I AATT 5 cut(s) 6, 154, 576, 648, 1239
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 2 cut(s) 983, 1328
SspMI CTAG 2 cut(s) 617, 1115
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 1230
StyI CCWWGG 2 cut(s) 226, 949
TaaI ACNGT 4 cut(s) 643, 655, 742, 965
TaiI ACGT 1 cut(s) 717
TaqI TCGA 6 cut(s) 272, 276, 452, 673, 939, 1255
TaqII GACCGA 1 cut(s) 278
TasI AATT 5 cut(s) 6, 154, 576, 648, 1239
TatI WGTACW 3 cut(s) 475, 496, 835
TfiI GAWTC 3 cut(s) 516, 581, 812
Tru1I TTAA 2 cut(s) 153, 570
Tru9I TTAA 2 cut(s) 153, 570
TscAI CASTG 4 cut(s) 153, 506, 766, 1198
TseFI GTSAC 4 cut(s) 532, 757, 773, 1117
TseI GCWGC 3 cut(s) 1001, 1205, 1235
Tsp45I GTSAC 4 cut(s) 532, 757, 773, 1117
TspDTI ATGAA 7 cut(s) 221, 238, 508, 573, 849, 1213, 1288
TspGWI ACGGA 1 cut(s) 924
TspRI CASTG 4 cut(s) 153, 506, 766, 1198
Tth111I GACNNNGTC 1 cut(s) 1283
Van91I CCANNNNNTGG 1 cut(s) 1173
XagI CCTNNNNNAGG 1 cut(s) 1078
XceI RCATGY 1 cut(s) 567
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 2 cut(s) 448, 580
XspI CTAG 2 cut(s) 617, 1115
ZraI GACGTC 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.