RLG00000006468

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
7483764 .. 7486006
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006468

Sequence Viewer

Length: 1362 bp
ATGACCACCGGCGACGAAAAGACCGAGTCTTTACCGGAATCCAAGCTACCCAATAACGAGAACAGTCCACTGCTGCAAAACCCAGATGAGGAAATCAACGGCGGGTCGTATTCCGGCGCTGTGTTCAATCTGTCCACGACGATTATTGGGGCCGGGATCATGGCTTTGCCGGCGACGATGAAGGTGCTGGGCCTCGGCGTCGGGATTGGGATGATCGTGTTGGTTGCGGTTTTGACTGAGGCCGCCGTGGAGATGTTGCTCAGGTTCAGTAGGGCCGGTAATGCGGCGTCGTTTGGTGGTGTTATGGGGGATGCTTTTGGAAGAGGAGGCAAGGTTGTGTTTCAGCTGTGTATCTTGGTCAACAATGTTGGGACTCTCATTGTTTACATGATCATACTTGGGGATGTGCTGTCTGGAACTGCTTCGAATGGAGCTCACCATACTGGAGTTTTGGAAGGGTGGTTTGGTGAAAACTGGTGGAATGGGCGTCTTTTCGTTCTGTTTGTTTCAACGATTTTCGTGTTTGCTCCGTTGATATCCCTGAAGCGAATAGATTCATTGAGATACTCATCTACTTTAGCAGTTGGGCTGGCAGGCGTTTTTCTAGTCATTACTGCAGGAATCACAGCTGTTAAAATTTCTCACGGAGATATTTCCATGCCCAGGTTGCTTCCTGTGTTGACTGATCTTACGTCAGTGTGGAATCTCTTCACAGTTGTTCCTGTTCTTGTGACGGCCTTCATCTGCCACTACAATGTGCATACGATCAACAATGAGCTTAAAAAGTCTAGCATGATTCAACCAGTCGTGCGGACATCATTAATATTGTGCTCTTCTGTCTACATACTGACCAGCCTTTTTGGGTTCCTCCTATTTGGGGACAAGACCCTTGATGATGTGTTAGCCAACTTTGACACCGACCTTGGCATCCCTTACAGCTCTTTGCTCAGTGATATTGTCCGCATCAGCTATGCCCTGCACCTCATGCTTGTTTTTCCTATTATCTTTCATCCACTGCGAATCAACTTTGATGACCTCTTCTTTCCTTCATCTAGGCCTTCGGATTTAGATGATCGTAGGTTTGCATTAATCACCTTCGGACTCATTTCTGTTATCTTCTTGGGCGCAAACTTCATTCCAAGCATCTGGGATGTTTTCCAGTTTACTGGAGCGACTGCCACAGTTTGCATTGGATTTATCTTCCCTGCTGCCATTGTTCTAAGGGACCGGCATGGCATAGCAACATCAAAGGACAAGACCTTATCTGTTTTCATGATTGGCCTTGCTGTGTTCGCAAATTTGATAGCAATATACAGTGATGCCGTGGCCTTGTTCAAAAAGCATGTCTCCCCTGATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

48.91

Weight (kDa)

5.83

Isoelectric Point (pI)

27.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 36 - 439 2e-55 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 840
AciI CCGC 6 cut(s) 102, 227, 243, 284, 811, 961
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 2 cut(s) 636, 1297
AcuI CTGAAG 1 cut(s) 563
AcyI GRCGYC 3 cut(s) 198, 287, 487
AfiI CCNNNNNNNGG 3 cut(s) 88, 663, 877
AgsI TTSAA 4 cut(s) 127, 510, 800, 1336
AjnI CCWGG 1 cut(s) 662
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 7 cut(s) 46, 346, 434, 629, 778, 939, 969
AluI AGCT 7 cut(s) 46, 346, 434, 629, 778, 939, 969
Alw21I GWGCWC 2 cut(s) 436, 833
Alw26I GTCTC 1 cut(s) 1351
AlwI GGATC 1 cut(s) 164
AoxI GGCC 8 cut(s) 150, 190, 240, 273, 735, 1055, 1279, 1326
ApeKI GCWGC 2 cut(s) 73, 1208
ApoI RAATTY 2 cut(s) 636, 1297
ArsI GACNNNNNNTTYG 2 cut(s) 1329, 1361
AseI ATTAAT 2 cut(s) 821, 1088
Asp700I GAANNNNTTC 3 cut(s) 421, 553, 707
AspLEI GCGC 2 cut(s) 119, 1127
AspS9I GGNCC 4 cut(s) 150, 190, 273, 1225
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 428, 479, 1084
AsuII TTCGAA 1 cut(s) 425
AvaII GGWCC 1 cut(s) 1225
BanII GRGCYC 1 cut(s) 436
Bbv12I GWGCWC 2 cut(s) 436, 833
BbvI GCAGC 2 cut(s) 60, 1195
BceAI ACGGC 4 cut(s) 115, 230, 750, 1307
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 664
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 1351
BfaI CTAG 3 cut(s) 605, 789, 1053
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 4 cut(s) 74, 243, 285, 1209
BlsI GCNGC 4 cut(s) 75, 244, 286, 1210
Bme1390I CCNGG 2 cut(s) 154, 664
Bme18I GGWCC 1 cut(s) 1225
BmgT120I GGNCC 4 cut(s) 150, 190, 273, 1225
BmiI GGNNCC 3 cut(s) 151, 866, 1226
BmrFI CCNGG 2 cut(s) 154, 664
BmsI GCATC 6 cut(s) 301, 936, 972, 1152, 1309, 1345
BpmI CTGGAG 2 cut(s) 465, 1188
Bpu10I CCTNAGC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 568
BsaHI GRCGYC 3 cut(s) 198, 287, 487
BsaJI CCNNGG 5 cut(s) 193, 246, 662, 922, 1323
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 663, 877
Bse118I RCCGGY 4 cut(s) 8, 169, 275, 1227
Bse1I ACTGG 5 cut(s) 448, 479, 803, 1159, 1171
Bse8I GATNNNNATC 1 cut(s) 568
BseBI CCWGG 1 cut(s) 664
BseDI CCNNGG 5 cut(s) 193, 246, 662, 922, 1323
BseGI GGATG 6 cut(s) 216, 316, 409, 927, 1009, 1156
BseJI GATNNNNATC 1 cut(s) 568
BseLI CCNNNNNNNGG 3 cut(s) 88, 663, 877
BseMII CTCAG 3 cut(s) 228, 274, 961
BseNI ACTGG 5 cut(s) 448, 479, 803, 1159, 1171
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 60, 1195
BseYI CCCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 962
BshFI GGCC 8 cut(s) 152, 192, 242, 275, 737, 1057, 1281, 1328
BsiHKAI GWGCWC 2 cut(s) 436, 833
BsiSI CCGG 7 cut(s) 9, 35, 114, 153, 170, 276, 1228
BslFI GGGAC 3 cut(s) 385, 893, 1238
BslI CCNNNNNNNGG 3 cut(s) 88, 663, 877
BsmAI GTCTC 1 cut(s) 1351
BsmFI GGGAC 3 cut(s) 385, 893, 1238
BsnI GGCC 8 cut(s) 152, 192, 242, 275, 737, 1057, 1281, 1328
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 436, 833
Bsp143I GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
BspACI CCGC 6 cut(s) 102, 227, 243, 284, 811, 961
BspANI GGCC 8 cut(s) 152, 192, 242, 275, 737, 1057, 1281, 1328
BspCNI CTCAG 3 cut(s) 229, 273, 960
BspHI TCATGA 1 cut(s) 1272
BspLI GGNNCC 3 cut(s) 151, 866, 1226
BspMAI CTGCAG 1 cut(s) 619
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 838
BspT104I TTCGAA 1 cut(s) 425
BsrFI RCCGGY 4 cut(s) 8, 169, 275, 1227
BsrI ACTGG 5 cut(s) 448, 479, 803, 1159, 1171
BssAI RCCGGY 4 cut(s) 8, 169, 275, 1227
BssECI CCNNGG 5 cut(s) 193, 246, 662, 922, 1323
BssMI GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
BssNI GRCGYC 3 cut(s) 198, 287, 487
BssT1I CCWWGG 1 cut(s) 922
Bst2UI CCWGG 1 cut(s) 664
Bst4CI ACNGT 4 cut(s) 65, 715, 1183, 1316
Bst6I CTCTTC 4 cut(s) 316, 713, 838, 1043
BstACI GRCGYC 3 cut(s) 198, 287, 487
BstAPI GCANNNNNTGC 1 cut(s) 985
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 171, 591, 595
BstDEI CTNAG 4 cut(s) 237, 260, 947, 1220
BstDSI CCRYGG 2 cut(s) 246, 1323
BstF5I GGATG 6 cut(s) 216, 316, 409, 927, 1009, 1156
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 2 cut(s) 119, 1127
BstKTI GATC 6 cut(s) 159, 216, 393, 688, 768, 1075
BstMAI GTCTC 1 cut(s) 1351
BstMBI GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 170, 281, 667, 985, 1292
BstNI CCWGG 1 cut(s) 664
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 2 cut(s) 152, 662
BstSFI CTRYAG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 60, 1195
BstXI CCANNNNNNTGG 2 cut(s) 1146, 1166
BsuRI GGCC 8 cut(s) 152, 192, 242, 275, 737, 1057, 1281, 1328
BtgI CCRYGG 2 cut(s) 246, 1323
BtsCI GGATG 6 cut(s) 216, 316, 409, 927, 1009, 1156
BtsI GCAGTG 2 cut(s) 68, 1013
BtsIMutI CAGTG 5 cut(s) 68, 702, 955, 1013, 1321
Cac8I GCNNGC 3 cut(s) 171, 591, 595
CciI TCATGA 1 cut(s) 1272
CfoI GCGC 2 cut(s) 119, 1127
Cfr10I RCCGGY 4 cut(s) 8, 169, 275, 1227
Cfr13I GGNCC 4 cut(s) 150, 190, 273, 1225
CseI GACGC 3 cut(s) 187, 276, 476
CviAII CATG 8 cut(s) 160, 388, 658, 793, 985, 1232, 1273, 1343
DdeI CTNAG 4 cut(s) 237, 260, 947, 1220
DpnI GATC 6 cut(s) 158, 215, 392, 687, 767, 1074
DpnII GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
Eam1104I CTCTTC 4 cut(s) 316, 713, 838, 1043
EarI CTCTTC 4 cut(s) 316, 713, 838, 1043
Ecl136II GAGCTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 922
Eco147I AGGCCT 1 cut(s) 1057
Eco24I GRGCYC 1 cut(s) 436
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 1225
Eco53kI GAGCTC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 662
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 922
EcoT38I GRGCYC 1 cut(s) 436
ErhI CCWWGG 1 cut(s) 922
FaeI CATG 8 cut(s) 163, 391, 661, 796, 988, 1235, 1276, 1346
FaqI GGGAC 3 cut(s) 385, 893, 1238
FatI CATG 8 cut(s) 159, 387, 657, 792, 984, 1231, 1272, 1342
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 4 cut(s) 74, 243, 285, 1209
FokI GGATG 6 cut(s) 223, 323, 416, 914, 996, 1163
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 4 cut(s) 74, 243, 285, 1209
FspBI CTAG 3 cut(s) 605, 789, 1053
GlaI GCGC 2 cut(s) 118, 1126
GluI GCNGC 4 cut(s) 74, 243, 285, 1209
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 2 cut(s) 465, 1188
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 8 cut(s) 152, 192, 242, 275, 737, 1057, 1281, 1328
HapII CCGG 7 cut(s) 9, 35, 114, 153, 170, 276, 1228
HgaI GACGC 3 cut(s) 187, 276, 476
HhaI GCGC 2 cut(s) 119, 1127
Hin1I GRCGYC 3 cut(s) 198, 287, 487
Hin1II CATG 8 cut(s) 163, 391, 661, 796, 988, 1235, 1276, 1346
Hin6I GCGC 2 cut(s) 117, 1125
HinP1I GCGC 2 cut(s) 117, 1125
HincII GTYRAC 2 cut(s) 361, 681
HindII GTYRAC 2 cut(s) 361, 681
HinfI GANTC 9 cut(s) 26, 38, 373, 554, 621, 703, 796, 1020, 1101
HpaII CCGG 7 cut(s) 9, 35, 114, 153, 170, 276, 1228
HphI GGTGA 3 cut(s) 428, 479, 1084
Hpy166II GTNNAC 7 cut(s) 68, 135, 361, 385, 681, 841, 1164
Hpy188I TCNGA 2 cut(s) 1063, 1100
Hpy188III TCNNGA 3 cut(s) 202, 414, 1273
Hpy8I GTNNAC 7 cut(s) 68, 135, 361, 385, 681, 841, 1164
Hpy99I CGWCG 5 cut(s) 17, 142, 178, 203, 292
HpyAV CCTTC 6 cut(s) 175, 449, 748, 1056, 1068, 1105
HpyCH4III ACNGT 4 cut(s) 65, 715, 1183, 1316
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 6 cut(s) 76, 617, 760, 979, 1085, 1188
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 281, 667, 985, 1292
HpyF3I CTNAG 4 cut(s) 237, 260, 947, 1220
HpySE526I ACGT 1 cut(s) 692
Hsp92I GRCGYC 3 cut(s) 198, 287, 487
Hsp92II CATG 8 cut(s) 163, 391, 661, 796, 988, 1235, 1276, 1346
HspAI GCGC 2 cut(s) 117, 1125
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
LguI GCTCTTC 1 cut(s) 838
LmnI GCTCC 3 cut(s) 431, 532, 1169
Lsp1109I GCAGC 2 cut(s) 60, 1195
LweI GCATC 6 cut(s) 301, 936, 972, 1152, 1309, 1345
MaeI CTAG 3 cut(s) 605, 789, 1053
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 1 cut(s) 730
MalI GATC 6 cut(s) 158, 215, 392, 687, 767, 1074
MboI GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
MboII GAAGA 6 cut(s) 333, 700, 825, 1030, 1108, 1192
MhlI GDGCHC 2 cut(s) 436, 833
MluCI AATT 2 cut(s) 636, 1297
MlyI GAGTC 3 cut(s) 35, 367, 1095
MnlI CCTC 8 cut(s) 82, 203, 232, 317, 320, 878, 992, 1046
MroNI GCCGGC 1 cut(s) 169
MroXI GAANNNNTTC 3 cut(s) 421, 553, 707
MseI TTAA 4 cut(s) 633, 780, 821, 1088
MslI CAYNNNNRTG 1 cut(s) 753
MspA1I CMGCKG 2 cut(s) 346, 629
MspI CCGG 7 cut(s) 9, 35, 114, 153, 170, 276, 1228
MspR9I CCNGG 2 cut(s) 154, 664
MvaI CCWGG 1 cut(s) 664
MwoI GCNNNNNNNGC 5 cut(s) 170, 281, 667, 985, 1292
NaeI GCCGGC 1 cut(s) 171
NciI CCSGG 1 cut(s) 154
NdeII GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
NgoMIV GCCGGC 1 cut(s) 169
NlaIII CATG 8 cut(s) 163, 391, 661, 796, 988, 1235, 1276, 1346
NlaIV GGNNCC 3 cut(s) 151, 866, 1226
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 730
NspI RCATGY 1 cut(s) 1346
NspV TTCGAA 1 cut(s) 425
PagI TCATGA 1 cut(s) 1272
PceI AGGCCT 1 cut(s) 1057
PciSI GCTCTTC 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 171
PdmI GAANNNNTTC 3 cut(s) 421, 553, 707
PfeI GAWTC 6 cut(s) 38, 554, 621, 703, 796, 1020
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 75, 244, 286, 1210
PleI GAGTC 3 cut(s) 34, 367, 1095
PpsI GAGTC 3 cut(s) 34, 367, 1095
PshBI ATTAAT 2 cut(s) 821, 1088
Psp124BI GAGCTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 662
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 662
PspN4I GGNNCC 3 cut(s) 151, 866, 1226
PspPI GGNCC 4 cut(s) 150, 190, 273, 1225
PstI CTGCAG 1 cut(s) 619
PsyI GACNNNGTC 1 cut(s) 25
PvuII CAGCTG 2 cut(s) 346, 629
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 838
SaqAI TTAA 4 cut(s) 633, 780, 821, 1088
SatI GCNGC 4 cut(s) 74, 243, 285, 1209
Sau3AI GATC 6 cut(s) 156, 213, 390, 685, 765, 1072
Sau96I GGNCC 4 cut(s) 150, 190, 273, 1225
SchI GAGTC 3 cut(s) 35, 367, 1095
ScrFI CCNGG 2 cut(s) 154, 664
SduI GDGCHC 2 cut(s) 436, 833
SfaNI GCATC 6 cut(s) 301, 936, 972, 1152, 1309, 1345
SfcI CTRYAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 425
SgrAI CRCCGGYG 1 cut(s) 8
SinI GGWCC 1 cut(s) 1225
SmiMI CAYNNNNRTG 1 cut(s) 753
Sse9I AATT 2 cut(s) 636, 1297
SseBI AGGCCT 1 cut(s) 1057
SsiI CCGC 6 cut(s) 102, 227, 243, 284, 811, 961
SspI AATATT 1 cut(s) 825
SspMI CTAG 3 cut(s) 605, 789, 1053
SstI GAGCTC 1 cut(s) 436
StuI AGGCCT 1 cut(s) 1057
StyD4I CCNGG 2 cut(s) 152, 662
StyI CCWWGG 1 cut(s) 922
TaaI ACNGT 4 cut(s) 65, 715, 1183, 1316
TaiI ACGT 1 cut(s) 695
TaqI TCGA 1 cut(s) 425
TaqII GACCGA 1 cut(s) 38
TasI AATT 2 cut(s) 636, 1297
TauI GCSGC 2 cut(s) 245, 287
TfiI GAWTC 6 cut(s) 38, 554, 621, 703, 796, 1020
Tru1I TTAA 4 cut(s) 633, 780, 821, 1088
Tru9I TTAA 4 cut(s) 633, 780, 821, 1088
TscAI CASTG 5 cut(s) 75, 702, 955, 1020, 1321
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 2 cut(s) 73, 1208
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 7 cut(s) 194, 546, 730, 998, 1038, 1123, 1261
TspGWI ACGGA 2 cut(s) 519, 660
TspRI CASTG 5 cut(s) 75, 702, 955, 1020, 1321
Tth111I GACNNNGTC 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 1225
VspI ATTAAT 2 cut(s) 821, 1088
XapI RAATTY 2 cut(s) 636, 1297
XceI RCATGY 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 840
XmnI GAANNNNTTC 3 cut(s) 421, 553, 707
XspI CTAG 3 cut(s) 605, 789, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.