Rroxscaffold_2G00086590

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
8770594 .. 8772451
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086590.1

Sequence Viewer

Length: 1344 bp
ATGACTTCTGAAAGCAAACGAAACTCCGATGAGAGAGCCCCTTTGTTACGAAAGACTCAACATGGAGATGAAGATGAGGCCAGGAGTGAGAAGTATTCTGGAGCATCCTTCTATGGTTGTGTGTTCAATTTGACATGCACCATTGTCGGTTCCGGAATCATGAGCCTGCCTGCAACCCTCAAATTGTTGGGACTCATTCCGGGGGTCGTGTTGATCATCCTAGTATCATTCATAATCGAGGCATCGGTTGAGTTGTTGTTGAGGTTCAGCAAGGAAGGGTCTGCAGTTTCCTATGGTGATGTCATGGCTCATGCATATGGAAGGATTGGCAAGATTGTACTTCAGATCACCATTGTTATTTACAGCACTGGTTCTCTCATTGTGTATATGATCATAATTGGTGATGTGCTTTCTGGATCAACCAGCTTGCATGGAGTTCACCACACCGGCATTTTGGAAGGGTGGTTTGGAGAGCATTGGTGGACTGGCCGCGCCTTCGTTCTTGTTGCTGTAACTGTCATCATATTTTTTCCATTGATGTTCTTTGAGCGCATCGATTCGGCAAGATATATATCTCTTATATCAGTTGGATTGGCTCTCGTGTTTCTTTTTGTTGTGGTTGGTGTCACAGTTTACAAATTAGTGGATGGAAGCATAAAGAGGCCAAAATGGTTTCCAAATGTGACAGATTCGACATCATTCTTTAAGATCTTCACTGCTGTCCCTGTGATTGTTTTTGCATACATTTGCCACTACAATGTCCACACAATACAGAATGAGCTTGGAGATTCTTCCCAAATGCAAGCTGTGGTACACAGTTCACTTTCTCTCTGTGCAGTTGTCTATGTAATGACAGGAATTTTCGGGTTCCTCCTTTTCGGTGAATCAACTATCTCCGACTTACTGTCCAACTTTGACACTGATCTTGGCATTCCCTACAGCTGGCTGTTCAATGACATTATTCGCATTAGCTATGCCGCGCATGTCATACTAGTTTTTCCCACCATATTCTTACCTCTGCGACTCAACTTGGACGGCCTCCTTTTCCCCACTGCAAGACCTCTGACTTTAGACAAGAAGAGATTTGTGTTGGAAAGTATAGGGCTTGTGTTTATTTCCCTTGTGGGTGCAATATTCATACCCAACATTTGGGTAGCTTTCGAGTTCTCTGGAGCAACCCTGGGAGGTTTACTTGCATTTGTGTTTCCTGCTTCCATTACTCTCAAGGACCCTCATTGTATAGCAACTACCAAGGACAAGATAGTGTCAGTTTCCATGATCGTTCTTGCTGTATTTGCAAACCTGATGGCTATATATAGCAATCTGAGCTCATTGTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

49.05

Weight (kDa)

6.41

Isoelectric Point (pI)

25.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 35 - 433 5.3e-54 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 36 - 438 1.6e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1149
AccII CGCG 2 cut(s) 492, 980
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 2 cut(s) 490, 978
AclWI GGATC 1 cut(s) 424
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 1 cut(s) 858
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 2 cut(s) 339, 813
AfiI CCNNNNNNNGG 2 cut(s) 942, 1149
AgsI TTSAA 2 cut(s) 127, 952
AhdI GACNNNNNGTC 1 cut(s) 904
AhlI ACTAGT 1 cut(s) 991
AjnI CCWGG 2 cut(s) 80, 1179
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 7 cut(s) 426, 781, 806, 942, 972, 1157, 1329
AluI AGCT 7 cut(s) 426, 781, 806, 942, 972, 1157, 1329
Alw21I GWGCWC 1 cut(s) 1331
AlwI GGATC 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 4 cut(s) 78, 487, 662, 1036
ApoI RAATTY 1 cut(s) 858
AspLEI GCGC 3 cut(s) 494, 552, 982
AspS9I GGNCC 1 cut(s) 1228
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 5 cut(s) 308, 340, 413, 431, 893
AvaII GGWCC 1 cut(s) 1228
BanII GRGCYC 2 cut(s) 40, 1331
BauI CACGAG 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 1331
BccI CCATC 2 cut(s) 641, 1300
BceAI ACGGC 1 cut(s) 1051
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 82, 1181
BclI TGATCA 2 cut(s) 213, 390
BcnI CCSGG 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 991
BfaI CTAG 2 cut(s) 221, 992
BfmI CTRYAG 2 cut(s) 282, 937
BglII AGATCT 1 cut(s) 708
BisI GCNGC 2 cut(s) 490, 978
BlsI GCNGC 2 cut(s) 491, 979
Bme1390I CCNGG 3 cut(s) 82, 201, 1181
Bme18I GGWCC 1 cut(s) 1228
BmeRI GACNNNNNGTC 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 1228
BmiI GGNNCC 3 cut(s) 151, 869, 1230
BmrFI CCNGG 3 cut(s) 82, 201, 1181
BmsI GCATC 3 cut(s) 113, 251, 561
BpmI CTGGAG 2 cut(s) 120, 1191
BpuEI CTTGAG 1 cut(s) 1208
BpuMI CCSGG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 571
BsaJI CCNNGG 4 cut(s) 200, 1179, 1180, 1251
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 942, 1149
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 373, 490
Bse8I GATNNNNATC 1 cut(s) 571
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 2 cut(s) 82, 1181
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 4 cut(s) 200, 1179, 1180, 1251
BseGI GGATG 3 cut(s) 104, 216, 652
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 942, 1149
BseMII CTCAG 1 cut(s) 1316
BseNI ACTGG 2 cut(s) 373, 490
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 2 cut(s) 492, 980
BshFI GGCC 4 cut(s) 80, 489, 664, 1038
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 1331
BsiSI CCGG 3 cut(s) 153, 200, 447
BslFI GGGAC 2 cut(s) 204, 707
BslI CCNNNNNNNGG 2 cut(s) 942, 1149
BsmFI GGGAC 2 cut(s) 204, 707
BsmI GAATGC 1 cut(s) 930
BsnI GGCC 4 cut(s) 80, 489, 664, 1038
Bsp1286I GDGCHC 2 cut(s) 40, 1331
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
BspACI CCGC 2 cut(s) 490, 978
BspANI GGCC 4 cut(s) 80, 489, 664, 1038
BspCNI CTCAG 1 cut(s) 1317
BspDI ATCGAT 1 cut(s) 555
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 2 cut(s) 492, 980
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 151, 869, 1230
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 2 cut(s) 373, 490
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 4 cut(s) 200, 1179, 1180, 1251
BssMI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
BssSI CACGAG 1 cut(s) 599
BssT1I CCWWGG 1 cut(s) 1251
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 2 cut(s) 82, 1181
Bst4CI ACNGT 4 cut(s) 517, 631, 818, 906
Bst6I CTCTTC 1 cut(s) 1073
BstC8I GCNNGC 5 cut(s) 167, 171, 428, 804, 944
BstDEI CTNAG 1 cut(s) 1325
BstF5I GGATG 3 cut(s) 104, 216, 652
BstFNI CGCG 2 cut(s) 492, 980
BstHHI GCGC 3 cut(s) 494, 552, 982
BstKTI GATC 7 cut(s) 216, 348, 393, 419, 711, 925, 1281
BstMBI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
BstMWI GCNNNNNNNGC 2 cut(s) 1295, 1326
BstNI CCWGG 2 cut(s) 82, 1181
BstNSI RCATGY 2 cut(s) 138, 986
BstSCI CCNGG 3 cut(s) 80, 199, 1179
BstSFI CTRYAG 2 cut(s) 282, 937
BstUI CGCG 2 cut(s) 492, 980
BstX2I RGATCY 1 cut(s) 708
BstYI RGATCY 1 cut(s) 708
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 4 cut(s) 80, 489, 664, 1038
BsuTUI ATCGAT 1 cut(s) 555
BtsCI GGATG 3 cut(s) 104, 216, 652
BtsI GCAGTG 2 cut(s) 714, 1050
BtsIMutI CAGTG 4 cut(s) 366, 714, 918, 1050
Cac8I GCNNGC 5 cut(s) 167, 171, 428, 804, 944
CciI TCATGA 1 cut(s) 159
CfoI GCGC 3 cut(s) 494, 552, 982
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 1228
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 2 cut(s) 338, 812
CviAII CATG 8 cut(s) 62, 135, 160, 304, 311, 431, 983, 1276
CviQI GTAC 2 cut(s) 338, 812
DdeI CTNAG 1 cut(s) 1325
DpnI GATC 7 cut(s) 215, 347, 392, 418, 710, 924, 1280
DpnII GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
DriI GACNNNNNGTC 1 cut(s) 904
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 1073
Eam1105I GACNNNNNGTC 1 cut(s) 904
EarI CTCTTC 1 cut(s) 1073
Ecl136II GAGCTC 1 cut(s) 1329
Eco130I CCWWGG 1 cut(s) 1251
Eco24I GRGCYC 2 cut(s) 40, 1331
Eco47I GGWCC 1 cut(s) 1228
Eco53kI GAGCTC 1 cut(s) 1329
Eco57I CTGAAG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 1329
EcoO109I RGGNCCY 1 cut(s) 1228
EcoRII CCWGG 2 cut(s) 80, 1179
EcoT14I CCWWGG 1 cut(s) 1251
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 40, 1331
ErhI CCWWGG 1 cut(s) 1251
FaeI CATG 8 cut(s) 65, 138, 163, 307, 314, 434, 986, 1279
FaqI GGGAC 2 cut(s) 204, 707
FatI CATG 8 cut(s) 61, 134, 159, 303, 310, 430, 982, 1275
FauNDI CATATG 1 cut(s) 316
FbaI TGATCA 2 cut(s) 213, 390
Fnu4HI GCNGC 2 cut(s) 490, 978
FokI GGATG 3 cut(s) 91, 203, 659
FriOI GRGCYC 2 cut(s) 40, 1331
Fsp4HI GCNGC 2 cut(s) 490, 978
FspBI CTAG 2 cut(s) 221, 992
GlaI GCGC 3 cut(s) 493, 551, 981
GluI GCNGC 2 cut(s) 490, 978
GsuI CTGGAG 2 cut(s) 120, 1191
HaeIII GGCC 4 cut(s) 80, 489, 664, 1038
HapII CCGG 3 cut(s) 153, 200, 447
HhaI GCGC 3 cut(s) 494, 552, 982
Hin1II CATG 8 cut(s) 65, 138, 163, 307, 314, 434, 986, 1279
Hin6I GCGC 3 cut(s) 492, 550, 980
HinP1I GCGC 3 cut(s) 492, 550, 980
HinfI GANTC 8 cut(s) 55, 156, 192, 557, 689, 788, 884, 1023
HpaII CCGG 3 cut(s) 153, 200, 447
HphI GGTGA 5 cut(s) 308, 340, 413, 431, 893
Hpy166II GTNNAC 7 cut(s) 439, 483, 634, 763, 814, 821, 1190
Hpy188I TCNGA 6 cut(s) 10, 28, 345, 898, 1065, 1326
Hpy188III TCNNGA 5 cut(s) 99, 153, 160, 414, 1170
Hpy8I GTNNAC 7 cut(s) 439, 483, 634, 763, 814, 821, 1190
HpyAV CCTTC 5 cut(s) 118, 269, 315, 452, 505
HpyCH4III ACNGT 4 cut(s) 517, 631, 818, 906
HpyF10VI GCNNNNNNNGC 2 cut(s) 1295, 1326
HpyF3I CTNAG 1 cut(s) 1325
Hsp92II CATG 8 cut(s) 65, 138, 163, 307, 314, 434, 986, 1279
HspAI GCGC 3 cut(s) 492, 550, 980
Kpn2I TCCGGA 1 cut(s) 152
Ksp22I TGATCA 2 cut(s) 213, 390
Kzo9I GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
LmnI GCTCC 2 cut(s) 101, 1172
LweI GCATC 3 cut(s) 113, 251, 561
MaeI CTAG 2 cut(s) 221, 992
MaeIII GTNAC 4 cut(s) 45, 511, 625, 682
MalI GATC 7 cut(s) 215, 347, 392, 418, 710, 924, 1280
MboI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
MboII GAAGA 4 cut(s) 83, 703, 783, 1090
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 2 cut(s) 40, 1331
MluCI AATT 5 cut(s) 127, 182, 396, 638, 858
MlyI GAGTC 3 cut(s) 49, 186, 1017
MmeI TCCRAC 4 cut(s) 568, 921, 933, 1071
Mph1103I ATGCAT 1 cut(s) 316
MroI TCCGGA 1 cut(s) 152
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 3 cut(s) 66, 315, 756
MspA1I CMGCKG 1 cut(s) 942
MspI CCGG 3 cut(s) 153, 200, 447
MspR9I CCNGG 3 cut(s) 82, 201, 1181
Mva1269I GAATGC 1 cut(s) 930
MvaI CCWGG 2 cut(s) 82, 1181
MvnI CGCG 2 cut(s) 492, 980
MwoI GCNNNNNNNGC 2 cut(s) 1295, 1326
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 316
NdeII GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
NlaIII CATG 8 cut(s) 65, 138, 163, 307, 314, 434, 986, 1279
NlaIV GGNNCC 3 cut(s) 151, 869, 1230
NmuCI GTSAC 2 cut(s) 625, 682
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 2 cut(s) 138, 986
PagI TCATGA 1 cut(s) 159
PasI CCCWGGG 1 cut(s) 1180
PctI GAATGC 1 cut(s) 930
PfeI GAWTC 5 cut(s) 156, 557, 689, 788, 884
PflMI CCANNNNNTGG 1 cut(s) 1149
PkrI GCNGC 2 cut(s) 491, 979
PleI GAGTC 3 cut(s) 49, 186, 1017
PpsI GAGTC 3 cut(s) 49, 186, 1017
PpuMI RGGWCCY 1 cut(s) 1228
Psp124BI GAGCTC 1 cut(s) 1331
Psp5II RGGWCCY 1 cut(s) 1228
Psp6I CCWGG 2 cut(s) 80, 1179
PspGI CCWGG 2 cut(s) 80, 1179
PspN4I GGNNCC 3 cut(s) 151, 869, 1230
PspPI GGNCC 1 cut(s) 1228
PspPPI RGGWCCY 1 cut(s) 1228
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 708
PvuII CAGCTG 1 cut(s) 942
RsaI GTAC 2 cut(s) 339, 813
RsaNI GTAC 2 cut(s) 338, 812
RseI CAYNNNNRTG 3 cut(s) 66, 315, 756
SacI GAGCTC 1 cut(s) 1331
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 2 cut(s) 490, 978
Sau3AI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1278
Sau96I GGNCC 1 cut(s) 1228
SchI GAGTC 3 cut(s) 49, 186, 1017
ScrFI CCNGG 3 cut(s) 82, 201, 1181
SduI GDGCHC 2 cut(s) 40, 1331
SfaNI GCATC 3 cut(s) 113, 251, 561
SfcI CTRYAG 2 cut(s) 282, 937
SinI GGWCC 1 cut(s) 1228
SmiMI CAYNNNNRTG 3 cut(s) 66, 315, 756
SmlI CTYRAG 1 cut(s) 1223
SmoI CTYRAG 1 cut(s) 1223
SpeI ACTAGT 1 cut(s) 991
Sse9I AATT 5 cut(s) 127, 182, 396, 638, 858
SsiI CCGC 2 cut(s) 490, 978
SspI AATATT 1 cut(s) 1134
SspMI CTAG 2 cut(s) 221, 992
SstI GAGCTC 1 cut(s) 1331
StyD4I CCNGG 3 cut(s) 80, 199, 1179
StyI CCWWGG 1 cut(s) 1251
TaaI ACNGT 4 cut(s) 517, 631, 818, 906
TaqI TCGA 4 cut(s) 237, 555, 692, 1161
TasI AATT 5 cut(s) 127, 182, 396, 638, 858
TatI WGTACW 1 cut(s) 337
TauI GCSGC 2 cut(s) 492, 980
TfiI GAWTC 5 cut(s) 156, 557, 689, 788, 884
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 4 cut(s) 373, 721, 925, 1057
TseFI GTSAC 2 cut(s) 625, 682
Tsp45I GTSAC 2 cut(s) 625, 682
TspDTI ATGAA 3 cut(s) 84, 220, 1126
TspRI CASTG 4 cut(s) 373, 721, 925, 1057
Van91I CCANNNNNTGG 1 cut(s) 1149
VpaK11BI GGWCC 1 cut(s) 1228
XapI RAATTY 1 cut(s) 858
XceI RCATGY 2 cut(s) 138, 986
XspI CTAG 2 cut(s) 221, 992
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.