MD17G1067600.v1.1

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
5472145 .. 5474543
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1067600.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGACTGATGGAGATCAAGAAAACATGTCAAAACACAACATCGAAAGCGCCGATGAGCGAGTTCCTTTGTTATCAAGCACACAAGATCGCGAGAAGGTTTCTGGAGCATCCTTTCATGGCTCGGTGTTCAACCTGTCATGCACAATCGTCGGCTCGGGCATCATGAGCCTGCCCGCAACCCTGAAACTCTTGGGGCTCGTTCCCGGGATTGTGTTGATCGTTACAGTTGCGTTTGTTATCCAGGCGTCGATCGAGATGCTGTTGAGATTCAGCAAGGCAGGGTCTGCATGTTCCTATGGAAATGTCATGGGCGATGCCTTTGGAAGAATAGGGAAGGTTGTGCTTCAGATCTGCATTGTTATCTACAACACTGGCTCTCTTATTGTGTACATGATCATAATTGAGGACGTGCTTTCCGGATCAAACTCAAAAGAGGTTCACCACACCGGCATTTTGGAAGGGTGGTTTGGAGCTCACTGGTGGACTAGCCGCACCTTTGTTCTTGTCACAGTAACTGTTGTCATATTTTTACCATTGATGTTCTTCGAGCGTATTGATTCAGCAAGATATATCTCTATCATATCAGTTGGATTGGCACTTGTGTTTCTTCTTGTTGTCATTGGAGTCACAGCTTACAAACTAATGGACGGAAGCATCGAGACTCCAAAATGGTTTCCAAATGTGACTGATTCTGCATCATTCTTTAACCTCTTCACCGCAGTCCCTGTCGTTGTTTTCGCATACATCTGTCACTACAATGTACACACAATTCAGAACGAGCTTGAAGATCCTTCCCTAATGCAAGCAGTTGTTCGAGGTTCACTTGCCCTATGTGCAGTTGTCTATGTAATGACAGGCATTTTTGGGTTCCTTCTCTTTGGCGAATCAACATATTCTGACCTGCTCTCCAACTTTGACACCGACATTGGCATCCCCTACAGTTGGCTGTTCAACGACATTATTCGAATCAGCTACGCAGGGCACGTCATATTAGTATTCCCAACCATTTTCTTACCGCTCCGGCTCAACTTGGACGGCCTCCTTTTCCCCTCGGCAAGGCCTCTGGCTTTAGACAAGAAGAGATTTGTGTTGGAAAGTTTAGGGCTTGTCTTCGTTGCCCTTGTGGGTGCAATATTCGTACCAAATATTTGGATAGCTTTTGAGTTCACAGGTGCAACCATGGGAGGATTACTTGCATTTGTTTTCCCTGCTTCCATCACTCTCAAGGATCCTCATTGTATAGCAACTACAAGGGACAAGATTGTGTCAGTCTCCATGATCCTTCTTGCAGTATTTGCAAACCTGATGGCCACTTACAGCAATCTCAGCTCTTTGTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

48.82

Weight (kDa)

5.57

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 36 - 410 2.4e-52 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 37 - 436 2e-08 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 909
AccBSI CCGCTC 1 cut(s) 1018
AccII CGCG 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 416
AciI CCGC 4 cut(s) 174, 490, 717, 1016
AclWI GGATC 5 cut(s) 427, 782, 1223, 1236, 1273
AcoI YGGCCR 1 cut(s) 1308
AcuI CTGAAG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 3 cut(s) 389, 762, 1140
AfiI CCNNNNNNNGG 2 cut(s) 942, 1056
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 130, 785, 952
AjiI CACGTC 2 cut(s) 409, 985
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 6 cut(s) 473, 632, 781, 972, 1157, 1329
AluI AGCT 6 cut(s) 473, 632, 781, 972, 1157, 1329
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 653, 1276
AlwI GGATC 5 cut(s) 427, 782, 1223, 1236, 1273
AlwNI CAGNNNCTG 3 cut(s) 284, 515, 725
Ama87I CYCGRG 2 cut(s) 154, 203
Aor13HI TCCGGA 1 cut(s) 416
AoxI GGCC 3 cut(s) 1036, 1058, 1308
AspLEI GCGC 1 cut(s) 50
AsuC2I CCSGG 2 cut(s) 204, 205
AsuHPI GGTGA 2 cut(s) 431, 706
AsuII TTCGAA 1 cut(s) 964
AvaI CYCGRG 2 cut(s) 154, 203
BaeGI GKGCMC 1 cut(s) 984
BalI TGGCCA 1 cut(s) 1310
BamHI GGATCC 1 cut(s) 1228
BanII GRGCYC 2 cut(s) 198, 475
BbsI GAAGAC 1 cut(s) 1102
Bbv12I GWGCWC 1 cut(s) 475
BccI CCATC 3 cut(s) 2, 1223, 1300
BceAI ACGGC 1 cut(s) 1051
BcgI CGANNNNNNTGC 4 cut(s) 130, 164, 238, 272
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 204, 205
BcoDI GTCTC 2 cut(s) 653, 1276
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 937
BfoI RGCGCY 1 cut(s) 51
BfuAI ACCTGC 1 cut(s) 909
BglII AGATCT 1 cut(s) 348
BisI GCNGC 1 cut(s) 490
BlsI GCNGC 1 cut(s) 491
Bme1390I CCNGG 3 cut(s) 204, 205, 242
BmeT110I CYCGRG 2 cut(s) 154, 203
BmgBI CACGTC 2 cut(s) 409, 985
BmiI GGNNCC 2 cut(s) 869, 1230
BmrFI CCNGG 3 cut(s) 204, 205, 242
BmsI GCATC 7 cut(s) 116, 168, 246, 304, 663, 704, 939
BpiI GAAGAC 1 cut(s) 1102
BpmI CTGGAG 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 964
BpuEI CTTGAG 1 cut(s) 1208
BpuMI CCSGG 2 cut(s) 204, 205
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 203, 1050, 1179
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 890, 920
Bsc4I CCNNNNNNNGG 2 cut(s) 942, 1056
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 376, 482
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 416
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 203, 1050, 1179
BseGI GGATG 2 cut(s) 107, 930
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 942, 1056
BseMII CTCAG 1 cut(s) 1339
BseNI ACTGG 2 cut(s) 376, 482
BseSI GKGCMC 1 cut(s) 984
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 3 cut(s) 1038, 1060, 1310
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 2 cut(s) 154, 203
BsiSI CCGG 4 cut(s) 204, 417, 447, 1021
BslFI GGGAC 2 cut(s) 707, 1268
BslI CCNNNNNNNGG 2 cut(s) 942, 1056
BsmAI GTCTC 2 cut(s) 653, 1276
BsmFI GGGAC 2 cut(s) 707, 1268
BsnI GGCC 3 cut(s) 1038, 1060, 1310
BsoBI CYCGRG 2 cut(s) 154, 203
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 3 cut(s) 198, 475, 984
Bsp13I TCCGGA 1 cut(s) 416
Bsp1407I TGTACA 2 cut(s) 387, 760
Bsp19I CCATGG 1 cut(s) 1179
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 4 cut(s) 174, 490, 717, 1016
BspANI GGCC 3 cut(s) 1038, 1060, 1310
BspCNI CTCAG 1 cut(s) 1338
BspEI TCCGGA 1 cut(s) 416
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 869, 1230
BspMI ACCTGC 1 cut(s) 909
BspPI GGATC 5 cut(s) 427, 782, 1223, 1236, 1273
BspT104I TTCGAA 1 cut(s) 964
BsrBI CCGCTC 1 cut(s) 1018
BsrFI RCCGGY 1 cut(s) 446
BsrGI TGTACA 2 cut(s) 387, 760
BsrI ACTGG 2 cut(s) 376, 482
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 3 cut(s) 203, 1050, 1179
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 1179
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 4 cut(s) 226, 511, 517, 941
Bst6I CTCTTC 2 cut(s) 716, 1073
BstACI GRCGYC 1 cut(s) 245
BstAPI GCANNNNNTGC 2 cut(s) 284, 1295
BstAUI TGTACA 2 cut(s) 387, 760
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 3 cut(s) 170, 174, 804
BstDEI CTNAG 1 cut(s) 1325
BstDSI CCRYGG 1 cut(s) 1179
BstENI CCTNNNNNAGG 1 cut(s) 1054
BstF5I GGATG 2 cut(s) 107, 930
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstMAI GTCTC 2 cut(s) 653, 1276
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 5 cut(s) 165, 284, 833, 1295, 1326
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 2 cut(s) 28, 291
BstSCI CCNGG 3 cut(s) 202, 203, 240
BstSFI CTRYAG 1 cut(s) 937
BstSLI GKGCMC 1 cut(s) 984
BstUI CGCG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 1102
BstX2I RGATCY 3 cut(s) 348, 787, 1228
BstXI CCANNNNNNTGG 1 cut(s) 1149
BstYI RGATCY 3 cut(s) 348, 787, 1228
BsuRI GGCC 3 cut(s) 1038, 1060, 1310
BtgI CCRYGG 1 cut(s) 1179
BtgZI GCGATG 1 cut(s) 327
BtrI CACGTC 2 cut(s) 409, 985
BtsCI GGATG 2 cut(s) 107, 930
BtsIMutI CAGTG 2 cut(s) 369, 475
BtuMI TCGCGA 1 cut(s) 90
BveI ACCTGC 1 cut(s) 909
Cac8I GCNNGC 3 cut(s) 170, 174, 804
CaiI CAGNNNCTG 3 cut(s) 284, 515, 725
CciI TCATGA 1 cut(s) 162
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 446
Cfr9I CCCGGG 1 cut(s) 203
CseI GACGC 1 cut(s) 234
Csp6I GTAC 3 cut(s) 388, 761, 1139
CviAII CATG 9 cut(s) 25, 116, 138, 163, 288, 307, 391, 1180, 1276
CviQI GTAC 3 cut(s) 388, 761, 1139
DdeI CTNAG 1 cut(s) 1325
EaeI YGGCCR 1 cut(s) 1308
Eam1104I CTCTTC 2 cut(s) 716, 1073
EarI CTCTTC 2 cut(s) 716, 1073
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 1179
Eco147I AGGCCT 1 cut(s) 1060
Eco24I GRGCYC 2 cut(s) 198, 475
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 2 cut(s) 154, 203
EcoICRI GAGCTC 1 cut(s) 473
EcoNI CCTNNNNNAGG 1 cut(s) 1054
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 1179
EcoT38I GRGCYC 2 cut(s) 198, 475
ErhI CCWWGG 1 cut(s) 1179
FaeI CATG 9 cut(s) 28, 119, 141, 166, 291, 310, 394, 1183, 1279
FaqI GGGAC 2 cut(s) 707, 1268
FatI CATG 9 cut(s) 24, 115, 137, 162, 287, 306, 390, 1179, 1275
FauI CCCGC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 490
FokI GGATG 2 cut(s) 94, 917
FriOI GRGCYC 2 cut(s) 198, 475
Fsp4HI GCNGC 1 cut(s) 490
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 3 cut(s) 1038, 1060, 1310
HapII CCGG 4 cut(s) 204, 417, 447, 1021
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 9 cut(s) 28, 119, 141, 166, 291, 310, 394, 1183, 1279
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 7 cut(s) 267, 557, 624, 661, 689, 884, 966
HpaII CCGG 4 cut(s) 204, 417, 447, 1021
HphI GGTGA 2 cut(s) 431, 706
Hpy166II GTNNAC 6 cut(s) 388, 439, 483, 763, 821, 1167
Hpy188I TCNGA 3 cut(s) 348, 774, 898
Hpy188III TCNNGA 7 cut(s) 17, 89, 102, 163, 253, 417, 658
Hpy8I GTNNAC 6 cut(s) 388, 439, 483, 763, 821, 1167
Hpy99I CGWCG 2 cut(s) 152, 250
HpyAV CCTTC 6 cut(s) 88, 328, 452, 801, 881, 1292
HpyCH4III ACNGT 4 cut(s) 226, 511, 517, 941
HpyCH4IV ACGT 2 cut(s) 408, 984
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 284, 833, 1295, 1326
HpyF3I CTNAG 1 cut(s) 1325
HpySE526I ACGT 2 cut(s) 408, 984
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 9 cut(s) 28, 119, 141, 166, 291, 310, 394, 1183, 1279
HspAI GCGC 1 cut(s) 48
Kpn2I TCCGGA 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 393
LmnI GCTCC 3 cut(s) 104, 470, 1023
LweI GCATC 7 cut(s) 116, 168, 246, 304, 663, 704, 939
MaeI CTAG 1 cut(s) 486
MaeII ACGT 2 cut(s) 408, 984
MaeIII GTNAC 6 cut(s) 220, 505, 511, 625, 682, 749
MbiI CCGCTC 1 cut(s) 1018
MboII GAAGA 7 cut(s) 336, 535, 599, 703, 797, 1090, 1102
MflI RGATCY 3 cut(s) 348, 787, 1228
MhlI GDGCHC 3 cut(s) 198, 475, 984
MlsI TGGCCA 1 cut(s) 1310
MluCI AATT 2 cut(s) 399, 768
MluNI TGGCCA 1 cut(s) 1310
MlyI GAGTC 2 cut(s) 633, 655
MmeI TCCRAC 3 cut(s) 568, 933, 1071
MnlI CCTC 9 cut(s) 397, 427, 719, 809, 1049, 1060, 1071, 1178, 1242
Mox20I TGGCCA 1 cut(s) 1310
MroI TCCGGA 1 cut(s) 416
MscI TGGCCA 1 cut(s) 1310
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 1310
MspI CCGG 4 cut(s) 204, 417, 447, 1021
MspR9I CCNGG 3 cut(s) 204, 205, 242
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 5 cut(s) 165, 284, 833, 1295, 1326
NciI CCSGG 2 cut(s) 204, 205
NcoI CCATGG 1 cut(s) 1179
NlaIII CATG 9 cut(s) 28, 119, 141, 166, 291, 310, 394, 1183, 1279
NlaIV GGNNCC 2 cut(s) 869, 1230
NmeAIII GCCGAG 1 cut(s) 1031
NmuCI GTSAC 4 cut(s) 505, 625, 682, 749
NruI TCGCGA 1 cut(s) 90
NspI RCATGY 2 cut(s) 28, 291
NspV TTCGAA 1 cut(s) 964
PagI TCATGA 1 cut(s) 162
PceI AGGCCT 1 cut(s) 1060
PciI ACATGT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 654, 981
PfeI GAWTC 5 cut(s) 267, 557, 689, 884, 966
PkrI GCNGC 1 cut(s) 491
Ple19I CGATCG 1 cut(s) 252
PleI GAGTC 2 cut(s) 632, 655
PpsI GAGTC 2 cut(s) 632, 655
PscI ACATGT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 869, 1230
PstNI CAGNNNCTG 3 cut(s) 284, 515, 725
PsuI RGATCY 3 cut(s) 348, 787, 1228
PvuI CGATCG 1 cut(s) 252
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 3 cut(s) 389, 762, 1140
RsaNI GTAC 3 cut(s) 388, 761, 1139
RseI CAYNNNNRTG 1 cut(s) 756
SacI GAGCTC 1 cut(s) 475
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 1 cut(s) 490
SchI GAGTC 2 cut(s) 633, 655
ScrFI CCNGG 3 cut(s) 204, 205, 242
SduI GDGCHC 3 cut(s) 198, 475, 984
SfaNI GCATC 7 cut(s) 116, 168, 246, 304, 663, 704, 939
SfcI CTRYAG 1 cut(s) 937
SfuI TTCGAA 1 cut(s) 964
SmaI CCCGGG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 1223
SmoI CTYRAG 1 cut(s) 1223
Sse9I AATT 2 cut(s) 399, 768
SseBI AGGCCT 1 cut(s) 1060
SsiI CCGC 4 cut(s) 174, 490, 717, 1016
SspI AATATT 2 cut(s) 1134, 1147
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 475
StuI AGGCCT 1 cut(s) 1060
StyD4I CCNGG 3 cut(s) 202, 203, 240
StyI CCWWGG 1 cut(s) 1179
TaaI ACNGT 4 cut(s) 226, 511, 517, 941
TaiI ACGT 2 cut(s) 411, 987
TaqI TCGA 7 cut(s) 42, 248, 252, 546, 657, 814, 964
TasI AATT 2 cut(s) 399, 768
TatI WGTACW 2 cut(s) 387, 760
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 5 cut(s) 267, 557, 689, 884, 966
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 2 cut(s) 376, 482
TseFI GTSAC 4 cut(s) 505, 625, 682, 749
Tsp45I GTSAC 4 cut(s) 505, 625, 682, 749
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 663
TspMI CCCGGG 1 cut(s) 203
TspRI CASTG 2 cut(s) 376, 482
XagI CCTNNNNNAGG 1 cut(s) 1054
XceI RCATGY 2 cut(s) 28, 291
XmaI CCCGGG 1 cut(s) 203
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.