Prupe.3G246800_v2.0.a1

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
23795043 .. 23796844
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G246800.1

Sequence Viewer

Length: 1182 bp
ATGAGCCTGCCTGCAACCTTGAAAATGCTGGGGCTCGTTCCTGGGATTGTTTTGATCATTATAGTTGCATTTGTTATCGAGGGGTCGATCGAGATGTTGTTGAGATTCAGCAAGGCAGGGTCTGCATATTCCTATGGTGATGCCATGGCTGATGCCTTTGGAAGAATTGGGAAAGTCTTACTTCAGATCTGCATTGTTATCTACAACACTGGTTCTCTTATAGTGTACATGATTATAATTGAGGATGTGCTTTCTGGATCAACCTCAAAAGAGGTTCACCATGCCGGCATTTTGGAAGGGTGGTTTGGAGAGCATTGGTGGACTAGCCGCGCCTTTGTTCTTGTTGCAGTAACTGTTGTTATATTTTTTCCATTGATGTTCTTCGAGCGTATTGATTCAGCCAGATATATCTCTGTTATATCAGTTGGATTGGCGATTGTGTTCCTTCTTGTTGTCATTGGGGTCACAACTTTCAAATTAGTGGACGGAAGCATAGAGACGCCTAAATGGTTTCCGGCTGTTACTGATTCAACATCATTCCTTAATCTCTCCACTGCTGTCCCTGTCGTTGTCTTTGCATATATCTGCCACTACAATGTTCACACAATACAGAATGAGCTTGCAGATTCTTCCCTAATTCAAGGGGTTGTTCGGGGTTCGCTTGCTCTATGTGCCCTTGTCTATGTAATGACCGGCATTTTCGGGTTCCTTCTGTTTGGTGAATCAACATATACTGACTTGCTCTCCAACTTTGACACTGACATTGGCGTTCCATATAGCTCACTGTTCAACAACATTGTTCGAATTAGCTATGCCGGTCATGTTATACTTGTCTTTCCAACCATATTCTTACCTCTGCGGCTCAACTTGGATGGCCTCCTTTTCCCCTCAGCAAGGCCCCTGGCTTTGGACAAGAAGAGGTTTGTGTTGGAAAGTGTAGGGCTTGTCCTCATTTCCCTTGTGGGTGCAATATCCATACCAAATATTTGGGTAGCTTTTGAGTTCACAGGAGCAACAATGGGAGGGTTACTAGCATTTGTGTTTCCTGCTTCCATCACTCTCAAGGACCCTCATTGTATAGCAACTACCAAGGACAAGATTGTGTCAGTCTCCATGATCATTCTTGCAGTAGTTTCAAACTTCATGGCCATATATAGCAATCTGCGCTCTTTGTTGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

42.78

Weight (kDa)

5.96

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AccII CGCG 1 cut(s) 330
AciI CCGC 2 cut(s) 328, 859
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 1146
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 894, 907
AgsI TTSAA 6 cut(s) 22, 475, 531, 641, 790, 1137
AjnI CCWGG 2 cut(s) 40, 900
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 4 cut(s) 619, 780, 810, 995
AluI AGCT 4 cut(s) 619, 780, 810, 995
Alw26I GTCTC 2 cut(s) 491, 1114
AlwI GGATC 1 cut(s) 265
AlwNI CAGNNNCTG 2 cut(s) 122, 353
AoxI GGCC 3 cut(s) 874, 896, 1146
AspLEI GCGC 2 cut(s) 332, 1167
AspS9I GGNCC 2 cut(s) 897, 1066
AsuHPI GGTGA 3 cut(s) 149, 269, 731
AsuII TTCGAA 1 cut(s) 802
AvaII GGWCC 1 cut(s) 1066
BaeGI GKGCMC 1 cut(s) 676
BalI TGGCCA 1 cut(s) 1148
BanII GRGCYC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 889
BccI CCATC 2 cut(s) 866, 1061
BciT130I CCWGG 2 cut(s) 42, 902
BclI TGATCA 2 cut(s) 54, 1116
BcoDI GTCTC 2 cut(s) 491, 1114
BfaI CTAG 2 cut(s) 324, 1031
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 328, 860
BlsI GCNGC 2 cut(s) 329, 861
Bme1390I CCNGG 2 cut(s) 42, 902
Bme18I GGWCC 1 cut(s) 1066
BmgT120I GGNCC 2 cut(s) 897, 1066
BmiI GGNNCC 3 cut(s) 707, 899, 1068
BmrFI CCNGG 2 cut(s) 42, 902
BmsI GCATC 2 cut(s) 130, 142
Bpu10I CCTNAGC 1 cut(s) 889
Bpu14I TTCGAA 1 cut(s) 802
BpuEI CTTGAG 1 cut(s) 1046
BsaHI GRCGYC 1 cut(s) 500
BsaJI CCNNGG 4 cut(s) 41, 144, 900, 1089
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 894, 907
Bse118I RCCGGY 3 cut(s) 284, 692, 815
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 42, 902
BseDI CCNNGG 4 cut(s) 41, 144, 900, 1089
BseGI GGATG 2 cut(s) 250, 877
BseLI CCNNNNNNNGG 2 cut(s) 894, 907
BseMII CTCAG 1 cut(s) 903
BseNI ACTGG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 676
BseYI CCCAGC 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 876, 898, 1148
BsiEI CGRYCG 1 cut(s) 90
BsiSI CCGG 4 cut(s) 285, 515, 693, 816
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 894, 907
BsmAI GTCTC 2 cut(s) 491, 1114
BsmBI CGTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 3 cut(s) 876, 898, 1148
Bsp119I TTCGAA 1 cut(s) 802
Bsp1286I GDGCHC 2 cut(s) 36, 676
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 5 cut(s) 54, 87, 186, 257, 1116
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 2 cut(s) 328, 859
BspANI GGCC 3 cut(s) 876, 898, 1148
BspCNI CTCAG 1 cut(s) 902
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 3 cut(s) 707, 899, 1068
BspPI GGATC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 802
BsrFI RCCGGY 3 cut(s) 284, 692, 815
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 3 cut(s) 284, 692, 815
BssECI CCNNGG 4 cut(s) 41, 144, 900, 1089
BssMI GATC 5 cut(s) 54, 87, 186, 257, 1116
BssNI GRCGYC 1 cut(s) 500
BssT1I CCWWGG 2 cut(s) 144, 1089
Bst2UI CCWGG 2 cut(s) 42, 902
Bst4CI ACNGT 2 cut(s) 355, 786
Bst6I CTCTTC 1 cut(s) 911
BstACI GRCGYC 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 802
BstC8I GCNNGC 5 cut(s) 8, 12, 286, 621, 663
BstDEI CTNAG 1 cut(s) 889
BstDSI CCRYGG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 892
BstF5I GGATG 2 cut(s) 250, 877
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 2 cut(s) 332, 1167
BstKTI GATC 5 cut(s) 57, 90, 189, 260, 1119
BstMAI GTCTC 2 cut(s) 491, 1114
BstMBI GATC 5 cut(s) 54, 87, 186, 257, 1116
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 122, 671, 1164
BstNI CCWGG 2 cut(s) 42, 902
BstSCI CCNGG 2 cut(s) 40, 900
BstSLI GKGCMC 1 cut(s) 676
BstUI CGCG 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 987
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 3 cut(s) 876, 898, 1148
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 250, 877
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 4 cut(s) 207, 552, 756, 782
Cac8I GCNNGC 5 cut(s) 8, 12, 286, 621, 663
CaiI CAGNNNCTG 2 cut(s) 122, 353
CfoI GCGC 2 cut(s) 332, 1167
Cfr10I RCCGGY 3 cut(s) 284, 692, 815
Cfr13I GGNCC 2 cut(s) 897, 1066
CseI GACGC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 226
CviAII CATG 6 cut(s) 145, 229, 281, 821, 1114, 1144
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 889
DpnI GATC 5 cut(s) 56, 89, 188, 259, 1118
DpnII GATC 5 cut(s) 54, 87, 186, 257, 1116
EaeI YGGCCR 1 cut(s) 1146
Eam1104I CTCTTC 1 cut(s) 911
EarI CTCTTC 1 cut(s) 911
Eco130I CCWWGG 2 cut(s) 144, 1089
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 1066
Eco57I CTGAAG 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 892
EcoO109I RGGNCCY 2 cut(s) 897, 1066
EcoRII CCWGG 2 cut(s) 40, 900
EcoT14I CCWWGG 2 cut(s) 144, 1089
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 144, 1089
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 6 cut(s) 148, 232, 284, 824, 1117, 1147
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 545
FatI CATG 6 cut(s) 144, 228, 280, 820, 1113, 1143
FbaI TGATCA 2 cut(s) 54, 1116
Fnu4HI GCNGC 2 cut(s) 328, 860
FokI GGATG 2 cut(s) 257, 884
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 328, 860
FspBI CTAG 2 cut(s) 324, 1031
GlaI GCGC 2 cut(s) 331, 1166
GluI GCNGC 2 cut(s) 328, 860
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 3 cut(s) 876, 898, 1148
HapII CCGG 4 cut(s) 285, 515, 693, 816
HgaI GACGC 1 cut(s) 508
HhaI GCGC 2 cut(s) 332, 1167
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 6 cut(s) 148, 232, 284, 824, 1117, 1147
Hin6I GCGC 2 cut(s) 330, 1165
HinP1I GCGC 2 cut(s) 330, 1165
HinfI GANTC 5 cut(s) 105, 395, 527, 626, 722
HpaII CCGG 4 cut(s) 285, 515, 693, 816
HphI GGTGA 3 cut(s) 149, 269, 731
Hpy166II GTNNAC 6 cut(s) 226, 277, 321, 484, 601, 1005
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 91, 255
Hpy8I GTNNAC 6 cut(s) 226, 277, 321, 484, 601, 1005
HpyAV CCTTC 3 cut(s) 290, 455, 719
HpyCH4III ACNGT 2 cut(s) 355, 786
HpyCH4V TGCA 9 cut(s) 14, 68, 125, 192, 347, 578, 623, 968, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 671, 1164
HpyF3I CTNAG 1 cut(s) 889
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 6 cut(s) 148, 232, 284, 824, 1117, 1147
HspAI GCGC 2 cut(s) 330, 1165
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Ksp22I TGATCA 2 cut(s) 54, 1116
Kzo9I GATC 5 cut(s) 54, 87, 186, 257, 1116
LmnI GCTCC 1 cut(s) 1010
LweI GCATC 2 cut(s) 130, 142
MaeI CTAG 2 cut(s) 324, 1031
MaeIII GTNAC 4 cut(s) 349, 463, 520, 1026
MalI GATC 5 cut(s) 56, 89, 188, 259, 1118
MboI GATC 5 cut(s) 54, 87, 186, 257, 1116
MboII GAAGA 4 cut(s) 174, 373, 621, 928
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 36, 676
MlsI TGGCCA 1 cut(s) 1148
MluCI AATT 5 cut(s) 165, 237, 476, 636, 804
MluNI TGGCCA 1 cut(s) 1148
MmeI TCCRAC 4 cut(s) 406, 771, 863, 909
Mox20I TGGCCA 1 cut(s) 1148
MroNI GCCGGC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 1148
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 1148
MspI CCGG 4 cut(s) 285, 515, 693, 816
MspR9I CCNGG 2 cut(s) 42, 902
MvaI CCWGG 2 cut(s) 42, 902
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 122, 671, 1164
NaeI GCCGGC 1 cut(s) 286
NcoI CCATGG 1 cut(s) 144
NdeII GATC 5 cut(s) 54, 87, 186, 257, 1116
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 6 cut(s) 148, 232, 284, 824, 1117, 1147
NlaIV GGNNCC 3 cut(s) 707, 899, 1068
NmuCI GTSAC 1 cut(s) 463
NspV TTCGAA 1 cut(s) 802
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 5 cut(s) 105, 395, 527, 626, 722
PkrI GCNGC 2 cut(s) 329, 861
Ple19I CGATCG 1 cut(s) 90
PpuMI RGGWCCY 1 cut(s) 1066
PsiI TTATAA 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 1066
Psp6I CCWGG 2 cut(s) 40, 900
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 2 cut(s) 40, 900
PspN4I GGNNCC 3 cut(s) 707, 899, 1068
PspPI GGNCC 2 cut(s) 897, 1066
PspPPI RGGWCCY 1 cut(s) 1066
PstNI CAGNNNCTG 2 cut(s) 122, 353
PsuI RGATCY 1 cut(s) 186
PvuI CGATCG 1 cut(s) 90
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 2 cut(s) 328, 860
Sau3AI GATC 5 cut(s) 54, 87, 186, 257, 1116
Sau96I GGNCC 2 cut(s) 897, 1066
ScrFI CCNGG 2 cut(s) 42, 902
SduI GDGCHC 2 cut(s) 36, 676
SetI ASST 9 cut(s) 20, 266, 276, 621, 782, 812, 856, 923, 997
SfaNI GCATC 2 cut(s) 130, 142
SfuI TTCGAA 1 cut(s) 802
SinI GGWCC 1 cut(s) 1066
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
Sse9I AATT 5 cut(s) 165, 237, 476, 636, 804
SsiI CCGC 2 cut(s) 328, 859
SspI AATATT 1 cut(s) 985
SspMI CTAG 2 cut(s) 324, 1031
StyD4I CCNGG 2 cut(s) 40, 900
StyI CCWWGG 2 cut(s) 144, 1089
TaaI ACNGT 2 cut(s) 355, 786
TaqI TCGA 5 cut(s) 78, 86, 90, 384, 802
TasI AATT 5 cut(s) 165, 237, 476, 636, 804
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 330, 862
TfiI GAWTC 5 cut(s) 105, 395, 527, 626, 722
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 4 cut(s) 214, 559, 763, 789
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 1132
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 4 cut(s) 214, 559, 763, 789
VpaK11BI GGWCC 1 cut(s) 1066
XagI CCTNNNNNAGG 1 cut(s) 892
XspI CTAG 2 cut(s) 324, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.