Rh2CG558200

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
73651795 .. 73661633
9839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG558200.1

Sequence Viewer

Length: 1530 bp
ATGACTTCTGAAAGCAAACGAAACTCCAATGAGAGAGCCCCTTTGTTACGAAAGACTCAACATGGAGATGAAGATGAGGCCAGGAGTGAGAAGTATTCTGGAGCATCCTTCTATGGTTGTGTGTTCAATTTGACATGCACCATTGTCGGTTCCGGAATCATGAGCCTGCCTGCAACCCTCAAATTGTTGGGACTCATTCCGGGGGTCGTGTTGATCATCCTAGTATCATTCATAATCGAGGCATCGGTTGAGTTGTTGTTGAGGTTCAGCAAGGAAGGGTCTGCAGTTTCCTATGGTGATGTCATGGCTCATGCATATGGAAGGATTGGGAAGATTGTACTTCAGATCACCATTGCTATTTACAGCACTGGTTCTCTCATTGTGTATATGATCATAATTGAGGATGTGCTTTCTGGATCAACCAGCTTGCATGGAGTTCACCACACCGGCATTTTGGAAGGGTGGTTTGGAGAGCATTGGTGGACTAGCCGCGCCTTCGTTCTTGTTGCTGTAACTGTCATCATATTTTTTCCATTGATGTTCTTTGAGCGCATCGATTCGGCAAGATATATATCTCTTATATCAGTTGGATTGGCTCTCGTGTTTCTTTTTGTTGTGGTTGGTGTCACAGTTTACAAATTAGTGGATGGAAGCATAGAGAGGCCAAAATGGTTTCCAAATGTGACAGATTCGACATCATTCTTTAAGATCTTCACTGCTGTCCCTGTGATTGTTTTTGCATACATTTGCCACTACAATGTCCACACAATACAGAATGAGCTTGGAGATTCTTCCCAAATGCAAGCTGTGGTACACAGTTCACTTTCTCTCTGTGCAGTTGTCTATGTAATGACAGGAATTTTCGGGTTCCTCCTTTTCGGTGAATCAACTATCTCCGACTTACTGTCCAACTTTGACACTGATCTTGGCATTCCCTACAGCTGGCTGTTCAATGACATTATTCGCATTAGCTATGCCGCGCATGTCGTACTAGTTTTTCCCACCATATTCTTACCTCTGCGACTCAACTTGGACGGCCTCCTTTTCCCCACTGCAAGACCTCTGACTTTAGACAAGAAGAGATTTGTGTTGGAAAGTATAGGGCTTGTGTTTATTTCCCTTGTGGGTGCAATATTCATACCCAACATTTGGGTAGCTTTCGAGTTCTCTGGAGCAACCCTGGGAGGTTTACTTGCATTTGTGTTTCCTGCTTCCATTACTCTCAAACCGTATTTGATTAAAAGTTTCAATACAGCTCTAGACGATGCTTATTCTGTCATCTGGATTGGACCAATGGGTCTGATCGAGTTTGAAAAGTTTGTTGCTGGTATTGTGGCGATTGCTGAGAAGCTTGCAGAGCTAAGTAACAAAAAAGTTATGACTATTGTTCGAGGTGGTGACACTGTTGCTGCTGTGAAGAAGGCTGGCTTTGCTGGCATAATGAGCCACGTATCAACAGGAGATGGTGCAAGCTTGGAGCTTCTTGAAGGGAAAGCCCTCCCTAGAATCCTTTCTCTTGATGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

55.6

Weight (kDa)

5.9

Isoelectric Point (pI)

25.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 35 - 415 5.9e-54 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 36 - 409 5.8e-07 Tryptophan/tyrosine permease family
PGK PF00162 413 - 498 8.1e-24 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1296
AccB7I CCANNNNNTGG 1 cut(s) 1149
AccII CGCG 2 cut(s) 492, 980
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 2 cut(s) 490, 978
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 1 cut(s) 858
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 3 cut(s) 339, 813, 990
AfiI CCNNNNNNNGG 2 cut(s) 942, 1149
AgsI TTSAA 5 cut(s) 127, 952, 1249, 1313, 1487
AhdI GACNNNNNGTC 1 cut(s) 904
AhlI ACTAGT 1 cut(s) 991
AjnI CCWGG 2 cut(s) 80, 1179
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AlwI GGATC 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 3 cut(s) 78, 662, 1036
ApeKI GCWGC 1 cut(s) 1409
ApoI RAATTY 1 cut(s) 858
Asp700I GAANNNNTTC 1 cut(s) 1510
AspLEI GCGC 3 cut(s) 494, 552, 982
AspS9I GGNCC 1 cut(s) 1289
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 5 cut(s) 308, 340, 431, 893, 1409
AvaII GGWCC 1 cut(s) 1289
BanII GRGCYC 1 cut(s) 40
BauI CACGAG 1 cut(s) 599
BbvI GCAGC 1 cut(s) 1396
BccI CCATC 2 cut(s) 641, 1457
BceAI ACGGC 1 cut(s) 1051
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 82, 1181
BclI TGATCA 2 cut(s) 213, 390
BcnI CCSGG 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 991
BfaI CTAG 5 cut(s) 221, 486, 992, 1259, 1503
BfmI CTRYAG 2 cut(s) 282, 937
BglII AGATCT 1 cut(s) 708
BisI GCNGC 3 cut(s) 490, 978, 1410
BlsI GCNGC 3 cut(s) 491, 979, 1411
Bme1390I CCNGG 3 cut(s) 82, 201, 1181
Bme18I GGWCC 1 cut(s) 1289
BmeRI GACNNNNNGTC 1 cut(s) 904
BmgT120I GGNCC 1 cut(s) 1289
BmiI GGNNCC 2 cut(s) 151, 869
BmrFI CCNGG 3 cut(s) 82, 201, 1181
BmsI GCATC 4 cut(s) 113, 251, 561, 1255
BpmI CTGGAG 2 cut(s) 120, 1191
BpuMI CCSGG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 1450
BsaBI GATNNNNATC 1 cut(s) 571
BsaJI CCNNGG 3 cut(s) 200, 1179, 1180
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 942, 1149
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 571
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 2 cut(s) 82, 1181
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 3 cut(s) 200, 1179, 1180
BseGI GGATG 4 cut(s) 104, 216, 409, 652
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 942, 1149
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 1335
BseNI ACTGG 1 cut(s) 373
BseXI GCAGC 1 cut(s) 1396
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 2 cut(s) 492, 980
BshFI GGCC 3 cut(s) 80, 664, 1038
BshVI ATCGAT 1 cut(s) 555
BsiSI CCGG 3 cut(s) 153, 200, 447
BslFI GGGAC 2 cut(s) 204, 707
BslI CCNNNNNNNGG 2 cut(s) 942, 1149
BsmFI GGGAC 2 cut(s) 204, 707
BsmI GAATGC 1 cut(s) 930
BsnI GGCC 3 cut(s) 80, 664, 1038
Bsp1286I GDGCHC 1 cut(s) 40
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
BspACI CCGC 2 cut(s) 490, 978
BspANI GGCC 3 cut(s) 80, 664, 1038
BspCNI CTCAG 1 cut(s) 1336
BspDI ATCGAT 1 cut(s) 555
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 2 cut(s) 492, 980
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 151, 869
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 3 cut(s) 200, 1179, 1180
BssMI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
BssSI CACGAG 1 cut(s) 599
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 2 cut(s) 82, 1181
Bst4CI ACNGT 6 cut(s) 517, 631, 818, 906, 1230, 1405
Bst6I CTCTTC 1 cut(s) 1073
BstBAI YACGTR 1 cut(s) 1450
BstC8I GCNNGC 9 cut(s) 167, 171, 428, 804, 944, 1353, 1426, 1435, 1471
BstDEI CTNAG 2 cut(s) 1344, 1361
BstF5I GGATG 4 cut(s) 104, 216, 409, 652
BstFNI CGCG 2 cut(s) 492, 980
BstHHI GCGC 3 cut(s) 494, 552, 982
BstKTI GATC 7 cut(s) 216, 348, 393, 419, 711, 925, 1305
BstMBI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
BstMWI GCNNNNNNNGC 4 cut(s) 1357, 1430, 1434, 1443
BstNI CCWGG 2 cut(s) 82, 1181
BstNSI RCATGY 2 cut(s) 138, 986
BstSCI CCNGG 3 cut(s) 80, 199, 1179
BstSFI CTRYAG 2 cut(s) 282, 937
BstUI CGCG 2 cut(s) 492, 980
BstV1I GCAGC 1 cut(s) 1396
BstX2I RGATCY 1 cut(s) 708
BstYI RGATCY 1 cut(s) 708
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 3 cut(s) 80, 664, 1038
BsuTUI ATCGAT 1 cut(s) 555
BtsCI GGATG 4 cut(s) 104, 216, 409, 652
BtsI GCAGTG 2 cut(s) 714, 1050
BtsIMutI CAGTG 5 cut(s) 366, 714, 918, 1050, 1401
Cac8I GCNNGC 9 cut(s) 167, 171, 428, 804, 944, 1353, 1426, 1435, 1471
CciI TCATGA 1 cut(s) 159
CfoI GCGC 3 cut(s) 494, 552, 982
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 1289
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 3 cut(s) 338, 812, 989
CviAII CATG 7 cut(s) 62, 135, 160, 304, 311, 431, 983
CviQI GTAC 3 cut(s) 338, 812, 989
DdeI CTNAG 2 cut(s) 1344, 1361
DpnI GATC 7 cut(s) 215, 347, 392, 418, 710, 924, 1304
DpnII GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
DrdI GACNNNNNNGTC 1 cut(s) 1296
DriI GACNNNNNGTC 1 cut(s) 904
DseDI GACNNNNNNGTC 1 cut(s) 1296
Eam1104I CTCTTC 1 cut(s) 1073
Eam1105I GACNNNNNGTC 1 cut(s) 904
EarI CTCTTC 1 cut(s) 1073
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 80, 1179
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 7 cut(s) 65, 138, 163, 307, 314, 434, 986
FalI AAGNNNNNCTT 2 cut(s) 1412, 1444
FaqI GGGAC 2 cut(s) 204, 707
FatI CATG 7 cut(s) 61, 134, 159, 303, 310, 430, 982
FauNDI CATATG 1 cut(s) 316
FbaI TGATCA 2 cut(s) 213, 390
Fnu4HI GCNGC 3 cut(s) 490, 978, 1410
FokI GGATG 4 cut(s) 91, 203, 416, 659
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 3 cut(s) 490, 978, 1410
FspBI CTAG 5 cut(s) 221, 486, 992, 1259, 1503
GlaI GCGC 3 cut(s) 493, 551, 981
GluI GCNGC 3 cut(s) 490, 978, 1410
GsuI CTGGAG 2 cut(s) 120, 1191
HaeIII GGCC 3 cut(s) 80, 664, 1038
HapII CCGG 3 cut(s) 153, 200, 447
HhaI GCGC 3 cut(s) 494, 552, 982
Hin1II CATG 7 cut(s) 65, 138, 163, 307, 314, 434, 986
Hin6I GCGC 3 cut(s) 492, 550, 980
HinP1I GCGC 3 cut(s) 492, 550, 980
HindIII AAGCTT 2 cut(s) 1349, 1471
HinfI GANTC 9 cut(s) 55, 156, 192, 557, 689, 788, 884, 1023, 1506
HpaII CCGG 3 cut(s) 153, 200, 447
HphI GGTGA 5 cut(s) 308, 340, 431, 893, 1409
Hpy166II GTNNAC 7 cut(s) 439, 483, 634, 763, 814, 821, 1190
Hpy188I TCNGA 5 cut(s) 10, 345, 898, 1065, 1302
Hpy188III TCNNGA 9 cut(s) 99, 153, 160, 414, 1170, 1259, 1282, 1484, 1517
Hpy8I GTNNAC 7 cut(s) 439, 483, 634, 763, 814, 821, 1190
HpyAV CCTTC 7 cut(s) 118, 269, 315, 452, 505, 1414, 1481
HpyCH4III ACNGT 6 cut(s) 517, 631, 818, 906, 1230, 1405
HpyCH4IV ACGT 1 cut(s) 1449
HpyF10VI GCNNNNNNNGC 4 cut(s) 1357, 1430, 1434, 1443
HpyF3I CTNAG 2 cut(s) 1344, 1361
HpySE526I ACGT 1 cut(s) 1449
Hsp92II CATG 7 cut(s) 65, 138, 163, 307, 314, 434, 986
HspAI GCGC 3 cut(s) 492, 550, 980
Kpn2I TCCGGA 1 cut(s) 152
Ksp22I TGATCA 2 cut(s) 213, 390
Kzo9I GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
LmnI GCTCC 3 cut(s) 101, 1172, 1477
Lsp1109I GCAGC 1 cut(s) 1396
LweI GCATC 4 cut(s) 113, 251, 561, 1255
MaeI CTAG 5 cut(s) 221, 486, 992, 1259, 1503
MaeII ACGT 1 cut(s) 1449
MaeIII GTNAC 6 cut(s) 45, 511, 625, 682, 1364, 1397
MalI GATC 7 cut(s) 215, 347, 392, 418, 710, 924, 1304
MboI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
MboII GAAGA 6 cut(s) 83, 343, 703, 783, 1090, 1429
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 5 cut(s) 127, 182, 396, 638, 858
MlyI GAGTC 3 cut(s) 49, 186, 1017
MmeI TCCRAC 4 cut(s) 568, 921, 933, 1071
Mph1103I ATGCAT 1 cut(s) 316
MroI TCCGGA 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 1510
MseI TTAA 2 cut(s) 705, 1239
MslI CAYNNNNRTG 3 cut(s) 66, 315, 756
MspA1I CMGCKG 1 cut(s) 942
MspI CCGG 3 cut(s) 153, 200, 447
MspR9I CCNGG 3 cut(s) 82, 201, 1181
Mva1269I GAATGC 1 cut(s) 930
MvaI CCWGG 2 cut(s) 82, 1181
MvnI CGCG 2 cut(s) 492, 980
MwoI GCNNNNNNNGC 4 cut(s) 1357, 1430, 1434, 1443
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 316
NdeII GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
NlaIII CATG 7 cut(s) 65, 138, 163, 307, 314, 434, 986
NlaIV GGNNCC 2 cut(s) 151, 869
NmuCI GTSAC 3 cut(s) 625, 682, 1397
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 2 cut(s) 138, 986
PagI TCATGA 1 cut(s) 159
PasI CCCWGGG 1 cut(s) 1180
PctI GAATGC 1 cut(s) 930
PdmI GAANNNNTTC 1 cut(s) 1510
PfeI GAWTC 6 cut(s) 156, 557, 689, 788, 884, 1506
PflMI CCANNNNNTGG 1 cut(s) 1149
PkrI GCNGC 3 cut(s) 491, 979, 1411
PleI GAGTC 3 cut(s) 49, 186, 1017
PpsI GAGTC 3 cut(s) 49, 186, 1017
Ppu21I YACGTR 1 cut(s) 1450
Psp6I CCWGG 2 cut(s) 80, 1179
PspGI CCWGG 2 cut(s) 80, 1179
PspN4I GGNNCC 2 cut(s) 151, 869
PspPI GGNCC 1 cut(s) 1289
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 708
PvuII CAGCTG 1 cut(s) 942
RsaI GTAC 3 cut(s) 339, 813, 990
RsaNI GTAC 3 cut(s) 338, 812, 989
RseI CAYNNNNRTG 3 cut(s) 66, 315, 756
SaqAI TTAA 2 cut(s) 705, 1239
SatI GCNGC 3 cut(s) 490, 978, 1410
Sau3AI GATC 7 cut(s) 213, 345, 390, 416, 708, 922, 1302
Sau96I GGNCC 1 cut(s) 1289
SchI GAGTC 3 cut(s) 49, 186, 1017
ScrFI CCNGG 3 cut(s) 82, 201, 1181
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 4 cut(s) 113, 251, 561, 1255
SfcI CTRYAG 2 cut(s) 282, 937
SinI GGWCC 1 cut(s) 1289
SmiMI CAYNNNNRTG 3 cut(s) 66, 315, 756
SpeI ACTAGT 1 cut(s) 991
Sse9I AATT 5 cut(s) 127, 182, 396, 638, 858
SsiI CCGC 2 cut(s) 490, 978
SspI AATATT 1 cut(s) 1134
SspMI CTAG 5 cut(s) 221, 486, 992, 1259, 1503
StyD4I CCNGG 3 cut(s) 80, 199, 1179
TaaI ACNGT 6 cut(s) 517, 631, 818, 906, 1230, 1405
TaiI ACGT 1 cut(s) 1452
TaqI TCGA 6 cut(s) 237, 555, 692, 1161, 1305, 1390
TasI AATT 5 cut(s) 127, 182, 396, 638, 858
TatI WGTACW 1 cut(s) 337
TauI GCSGC 2 cut(s) 492, 980
TfiI GAWTC 6 cut(s) 156, 557, 689, 788, 884, 1506
Tru1I TTAA 2 cut(s) 705, 1239
Tru9I TTAA 2 cut(s) 705, 1239
TscAI CASTG 5 cut(s) 373, 721, 925, 1057, 1408
TseFI GTSAC 3 cut(s) 625, 682, 1397
TseI GCWGC 1 cut(s) 1409
Tsp45I GTSAC 3 cut(s) 625, 682, 1397
TspDTI ATGAA 3 cut(s) 84, 220, 1126
TspRI CASTG 5 cut(s) 373, 721, 925, 1057, 1408
Van91I CCANNNNNTGG 1 cut(s) 1149
VpaK11BI GGWCC 1 cut(s) 1289
XapI RAATTY 1 cut(s) 858
XbaI TCTAGA 1 cut(s) 1258
XceI RCATGY 2 cut(s) 138, 986
XmnI GAANNNNTTC 1 cut(s) 1510
XspI CTAG 5 cut(s) 221, 486, 992, 1259, 1503
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.