Rh2DG597200

sodium-coupled neutral amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000616
Physical Location & Seq
Forward (+)
82978396 .. 82979693
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG597200.1

Sequence Viewer

Length: 897 bp
ATGGCGGAGGGGATTAATTTCCCAACACATTGGTGGACTGGCCGCGCCTTCGTTCTTGTTGCTGTAACTGTCATCATATTTTTTCCGTTGATGTTCTTTGAGCGCATCGATTCAGCGAGATATATATCTCTTATATCAGTTGGATTGGCTCTTGTGTTTCTCTTTGTTGTGGTTGGTGTCACAGTTTACAAATTAGTGGATGGAAGCATAGAGAGGCCAAAATGGTTTCCAAATGTGACAGATTCGACATCATTCTTTAAGATCTTCACTGCTGTCCCTGTGATTGTTTTTGCATACATTTGCCACTACAATGTCCACACAATACAGAATGAGCTTGGAGATTCTTCCCAAATGCAAGCTGTGGTACAGAGTTCACTTTCTCTCTGTGCAGTTGTCTATGTAATGACAGGAATTTTCGGGTTCCTCCTTTTCGGTGAATCAACTATCTCCGACTTACTGTCCAACTTTGACACTGATCTTGGGATTCCCTACAGCTGGCTGTTCAATGACATTATTCGCATTAGCTATGCCGCGCATGTCATACTAGTTTTTCCCACCATATTCTTACCTCTGCGACTCAACTTGGACGGCCTCCTTTTCCCCACTGCAAGACCTCTGACTTTAGACAAGAAGAGATTTGTGTTGGAAAGTATAGGGCTTGTGTTTATTTCCCTTGTGGGTGCAATATTCATACCCAACATTTGGGTAGCTTTCGAGTTCTCTGGAGCAACCCTGGGAGGTTTACTTGCATTTGTGTTTCCTGCTTCCATTACTCTCAAGGACCCTCATTGTATAGCAACTACCAAGGACAAGATAGTGTCAGTTTCCATGATCGTTCTTGCTGTATTTGCAAACCTGATGGCTATATATAGCAATCTGAGCTCATGGTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04724 ko04727 ko04974 map04724 map04727 map04974
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

298

Amino Acids

33.08

Weight (kDa)

5.92

Isoelectric Point (pI)

24.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 15 - 285 1.2e-31 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30390 AT3G30390 AT3G30390 AT5G38820 AT5G38820 AT5G38820
fragaria_vesca FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_4g28960 FvH4_6g46060 FvH4_6g46060 FvH4_6g46080
malus_domestica MD09G1077200.v1.1 MD09G1077400.v1.1 MD15G1064300.v1.1 MD16G1053900.v1.1 MD17G1067600.v1.1 MD17G1067800.v1.1
prunus_persica Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G418300_v2.0.a1 Prupe.3G246600_v2.0.a1 Prupe.3G246800_v2.0.a1 Prupe.3G246900_v2.0.a1
pyrus_communis pycom09g00430 pycom09g00450 pycom15g06100 pycom16g04690 pycom17g06820
rosa_chinensis RchiOBHm_Chr2g0164381 RchiOBHm_Chr2g0164401 RchiOBHm_Chr4g0437101 RchiOBHm_Chr6g0310121
rosa_laevigata RLG00000006468 RLG00000010508 RLG00000021456 RLG00000021458
rosa_multiflora Rmu_co8348867.1_g000001 Rmu_sc0000294.1_g000029 Rmu_sc0009487.1_g000003 Rmu_sc0018759.1_g000001 Rmu_sc0021401.1_g000003 Rmu_ssc0000006.1_g000009
rosa_roxburghii Rroxscaffold_2G00086590 Rroxscaffold_2G00086610 Rroxscaffold_5G00378170 Rroxscaffold_7G00158840
rosa_rugosa Rorug02G0508200 Rorug02G0508300 Rorug04G0298000 Rorug06G0377600
rosa_samantha Rh2AG576200 Rh2AG576400 Rh2BG587200 Rh2BG587400 Rh2CG558000 Rh2CG558200 Rh2DG596900 Rh2DG597200 Rh4AG352800 Rh4BG362300 Rh4CG376500 Rh4DG356300 Rh6AG491600 Rh6BG501000 Rh6CG506000 Rh6DG492100
rosa_wichuraiana Rw2G047720 Rw2G047740 Rw2G047820 Rw2G047840 Rw4G030890 Rw6G042770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 702
AccII CGCG 2 cut(s) 45, 533
AciI CCGC 3 cut(s) 5, 43, 531
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 411
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 495, 702
AgsI TTSAA 1 cut(s) 505
AhdI GACNNNNNGTC 1 cut(s) 457
AhlI ACTAGT 1 cut(s) 544
AjnI CCWGG 1 cut(s) 732
AleI CACNNNNGTG 1 cut(s) 31
AluBI AGCT 6 cut(s) 334, 359, 495, 525, 710, 882
AluI AGCT 6 cut(s) 334, 359, 495, 525, 710, 882
Alw21I GWGCWC 1 cut(s) 884
AoxI GGCC 3 cut(s) 40, 215, 589
ApoI RAATTY 1 cut(s) 411
AseI ATTAAT 1 cut(s) 15
AspLEI GCGC 3 cut(s) 47, 105, 535
AspS9I GGNCC 1 cut(s) 781
AsuHPI GGTGA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 884
Bbv12I GWGCWC 1 cut(s) 884
BccI CCATC 2 cut(s) 194, 853
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 1 cut(s) 734
BcuI ACTAGT 1 cut(s) 544
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 490
BglII AGATCT 1 cut(s) 261
BisI GCNGC 2 cut(s) 43, 531
BlsI GCNGC 2 cut(s) 44, 532
Bme1390I CCNGG 1 cut(s) 734
Bme18I GGWCC 1 cut(s) 781
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 2 cut(s) 422, 783
BmrFI CCNGG 1 cut(s) 734
BmsI GCATC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 761
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 124
BsaJI CCNNGG 3 cut(s) 732, 733, 804
Bsc4I CCNNNNNNNGG 2 cut(s) 495, 702
Bse1I ACTGG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 734
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 732, 733, 804
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 495, 702
BseMII CTCAG 1 cut(s) 869
BseNI ACTGG 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 2 cut(s) 45, 533
BshFI GGCC 3 cut(s) 42, 217, 591
BshVI ATCGAT 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 884
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 495, 702
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 3 cut(s) 42, 217, 591
Bsp1286I GDGCHC 1 cut(s) 884
Bsp143I GATC 3 cut(s) 261, 475, 831
BspACI CCGC 3 cut(s) 5, 43, 531
BspANI GGCC 3 cut(s) 42, 217, 591
BspCNI CTCAG 1 cut(s) 870
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 2 cut(s) 45, 533
BspLI GGNNCC 2 cut(s) 422, 783
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 732, 733, 804
BssMI GATC 3 cut(s) 261, 475, 831
BssT1I CCWWGG 1 cut(s) 804
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 3 cut(s) 70, 184, 459
Bst6I CTCTTC 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 357, 497
BstDEI CTNAG 1 cut(s) 878
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 2 cut(s) 45, 533
BstHHI GCGC 3 cut(s) 47, 105, 535
BstKTI GATC 3 cut(s) 264, 478, 834
BstMBI GATC 3 cut(s) 261, 475, 831
BstMWI GCNNNNNNNGC 2 cut(s) 848, 879
BstNI CCWGG 1 cut(s) 734
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 732
BstSFI CTRYAG 1 cut(s) 490
BstUI CGCG 2 cut(s) 45, 533
BstX2I RGATCY 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 30
BstYI RGATCY 1 cut(s) 261
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 42, 217, 591
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 2 cut(s) 267, 603
BtsIMutI CAGTG 3 cut(s) 267, 471, 603
Cac8I GCNNGC 2 cut(s) 357, 497
CfoI GCGC 3 cut(s) 47, 105, 535
Cfr13I GGNCC 1 cut(s) 781
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 1 cut(s) 365
CviAII CATG 3 cut(s) 536, 829, 885
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 878
DpnI GATC 3 cut(s) 263, 477, 833
DpnII GATC 3 cut(s) 261, 475, 831
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 626
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 882
Eco130I CCWWGG 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 884
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 882
EcoICRI GAGCTC 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 732
EcoT14I CCWWGG 1 cut(s) 804
EcoT38I GRGCYC 1 cut(s) 884
ErhI CCWWGG 1 cut(s) 804
FaeI CATG 3 cut(s) 539, 832, 888
FaqI GGGAC 1 cut(s) 260
FatI CATG 3 cut(s) 535, 828, 884
Fnu4HI GCNGC 2 cut(s) 43, 531
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 884
Fsp4HI GCNGC 2 cut(s) 43, 531
FspBI CTAG 1 cut(s) 545
GlaI GCGC 3 cut(s) 46, 104, 534
GluI GCNGC 2 cut(s) 43, 531
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 3 cut(s) 42, 217, 591
HhaI GCGC 3 cut(s) 47, 105, 535
Hin1II CATG 3 cut(s) 539, 832, 888
Hin6I GCGC 3 cut(s) 45, 103, 533
HinP1I GCGC 3 cut(s) 45, 103, 533
HinfI GANTC 6 cut(s) 110, 242, 341, 437, 484, 576
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 5 cut(s) 36, 187, 316, 374, 743
Hpy188I TCNGA 3 cut(s) 451, 618, 879
Hpy188III TCNNGA 1 cut(s) 723
Hpy8I GTNNAC 5 cut(s) 36, 187, 316, 374, 743
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 3 cut(s) 70, 184, 459
HpyCH4V TGCA 7 cut(s) 293, 355, 389, 608, 683, 749, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 848, 879
HpyF3I CTNAG 1 cut(s) 878
Hsp92II CATG 3 cut(s) 539, 832, 888
HspAI GCGC 3 cut(s) 45, 103, 533
Kzo9I GATC 3 cut(s) 261, 475, 831
LmnI GCTCC 1 cut(s) 725
LpnPI CCDG 9 cut(s) 24, 291, 393, 481, 708, 719, 746, 774, 869
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 3 cut(s) 64, 178, 235
MalI GATC 3 cut(s) 263, 477, 833
MboI GATC 3 cut(s) 261, 475, 831
MboII GAAGA 3 cut(s) 256, 336, 643
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 884
MluCI AATT 3 cut(s) 16, 191, 411
MlyI GAGTC 1 cut(s) 570
MmeI TCCRAC 4 cut(s) 121, 474, 486, 624
MnlI CCTC 7 cut(s) 207, 434, 579, 602, 624, 731, 795
MseI TTAA 2 cut(s) 15, 258
MslI CAYNNNNRTG 2 cut(s) 31, 309
MspA1I CMGCKG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 734
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 2 cut(s) 45, 533
MwoI GCNNNNNNNGC 2 cut(s) 848, 879
NdeII GATC 3 cut(s) 261, 475, 831
NlaIII CATG 3 cut(s) 539, 832, 888
NlaIV GGNNCC 2 cut(s) 422, 783
NmuCI GTSAC 2 cut(s) 178, 235
NspI RCATGY 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 31
PasI CCCWGGG 1 cut(s) 733
PfeI GAWTC 5 cut(s) 110, 242, 341, 437, 484
PflMI CCANNNNNTGG 1 cut(s) 702
PkrI GCNGC 2 cut(s) 44, 532
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PpuMI RGGWCCY 1 cut(s) 781
PshBI ATTAAT 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 884
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 2 cut(s) 422, 783
PspPI GGNCC 1 cut(s) 781
PspPPI RGGWCCY 1 cut(s) 781
PsuI RGATCY 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 495
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
RseI CAYNNNNRTG 2 cut(s) 31, 309
SacI GAGCTC 1 cut(s) 884
SaqAI TTAA 2 cut(s) 15, 258
SatI GCNGC 2 cut(s) 43, 531
Sau3AI GATC 3 cut(s) 261, 475, 831
Sau96I GGNCC 1 cut(s) 781
SchI GAGTC 1 cut(s) 570
ScrFI CCNGG 1 cut(s) 734
SduI GDGCHC 1 cut(s) 884
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 490
SinI GGWCC 1 cut(s) 781
SmiMI CAYNNNNRTG 2 cut(s) 31, 309
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
SpeI ACTAGT 1 cut(s) 544
Sse9I AATT 3 cut(s) 16, 191, 411
SsiI CCGC 3 cut(s) 5, 43, 531
SspI AATATT 1 cut(s) 687
SspMI CTAG 1 cut(s) 545
SstI GAGCTC 1 cut(s) 884
StyD4I CCNGG 1 cut(s) 732
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 3 cut(s) 70, 184, 459
TaqI TCGA 3 cut(s) 108, 245, 714
TasI AATT 3 cut(s) 16, 191, 411
TauI GCSGC 2 cut(s) 45, 533
TfiI GAWTC 5 cut(s) 110, 242, 341, 437, 484
Tru1I TTAA 2 cut(s) 15, 258
Tru9I TTAA 2 cut(s) 15, 258
TscAI CASTG 3 cut(s) 274, 478, 610
TseFI GTSAC 2 cut(s) 178, 235
Tsp45I GTSAC 2 cut(s) 178, 235
TspDTI ATGAA 1 cut(s) 679
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 3 cut(s) 274, 478, 610
Van91I CCANNNNNTGG 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 781
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 1 cut(s) 411
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.