FvH4_4g28960

sodium-coupled neutral amino acid transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
29351347 .. 29354287
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28960.t1

Sequence Viewer

Length: 1362 bp
ATGACCACCGGCGACAAAAAGACCGAGTCTTTACCGGAGTCCGACCTACCCATTAACGAGAACTGTCCGCTGCTGCACAACTCAGATGAGGAAACCGCCGGCGGGTCGTATTCCGGCGCGGTGTTCAACCTGTCGACGACGATCATTGGTGCCGGGATTATGGCTTTGCCGGCGACGATGAAGGTGCTGGGGCTCGGAGTTGGGATTGGGATGATCGTGTTGGTTGCGCTTTTGACGGAGGCTGCGGTGGAGATGTTGCTGAGGTTTAGTCGGGCCGGCAATGAGGCGTCGTTTGGTGGTGTTATGGGGGATGCTTTTGGGACAGGTGGCAGGGTTGTGTTTCAGTTGTCTATTTTGGTTAACAACCTCGGGACTCTCATTGTGTATATGATCATACTTGGTGATGTGCTGTCTGGAACTGCTTCAAGTGGAGTTCATCATACTGGAGTGTTGGAAGGGTGGTTTGGTGAAAACTGGTGGAATGGGCGTCTTTTCGTTCTGTTTGTTACAACGATTTTCGTGTTTGGTCCGTTGGTATCCCTGAAACGAATAGATTCATTGAGATACTCATCTACTTTAGCAGTTGGGCTGGCGGGCGTTTTTCTAGTCATTACTGCAGGAATCACAGCTGTTAAAATCTCTCATGGAGATATTTCCATGCCCAGGTTGCTTCCTGTGTTGACTGATCTTACGTCAGTGTGGAATCTCTTCACAGTTGTTCCTGTTCTTGTGACAGCTTTCATCTGCCACTTCAATGTGCATACGATCAGCAATGAGCTTAAGAAGCCTAGCATGATTCAACCAGTTGTGTGGACATCATTGGGATTGTGCTCTTCTGTCTACATACTAACAAGCCTTTTCGGGTTCCTCCTATTTGGGGACTCAATCCTTGATGATGTGTTAGCCAACTTTGACACCGACCTTGGCATCCCTTACAGCTCTATGCTTAGTGATATTGTTCGCATTAGCTATGCCCTGCACCTCATGCTTGTTTTTCCTATTATCTTTCATCCATTGCGAGTCAACTTTGATGATCTCTTCTTTCCTTCATCTAGGTCTTTGGATTTAGATAATCGTAGGTTTGCATTAATCACCTTGGGACTCATTTCTATTATCTTCTTGGGCGCAAACTTCATTCCAAGCATCTGGGATGTTTTCCAGTTTACTGGAGCGACTGCCACAGTTTGCATTGGATTTATCTTCCCTGCTGCCATTGTTCTAAGGGACCGGCATGGCATAGCAACATCAAAGGACAAGACCTTATCTGTTTTCATGATTGGTCTTGCTGTGTTCACTAATTTGATAGCAATATACAGTGATGCCGTGGCCTTGTTAAAAAAGAATGTCTCCCCTCATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

48.79

Weight (kDa)

5.65

Isoelectric Point (pI)

26.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 36 - 439 3.4e-54 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccI GTMKAC 2 cut(s) 134, 840
AccII CGCG 1 cut(s) 119
AciI CCGC 6 cut(s) 68, 96, 102, 119, 245, 593
AcyI GRCGYC 2 cut(s) 287, 487
AfiI CCNNNNNNNGG 3 cut(s) 102, 663, 877
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 4 cut(s) 127, 426, 754, 800
AjnI CCWGG 1 cut(s) 662
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 5 cut(s) 629, 737, 778, 939, 969
AluI AGCT 5 cut(s) 629, 737, 778, 939, 969
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 1 cut(s) 1351
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 2 cut(s) 273, 1326
ApeKI GCWGC 4 cut(s) 70, 73, 242, 1208
AseI ATTAAT 1 cut(s) 1088
Asp700I GAANNNNTTC 3 cut(s) 421, 553, 707
AspLEI GCGC 3 cut(s) 119, 229, 1127
AspS9I GGNCC 3 cut(s) 273, 527, 1225
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 3 cut(s) 413, 479, 1084
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 2 cut(s) 527, 1225
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 833
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 57, 60, 229, 1195
BceAI ACGGC 1 cut(s) 1307
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 664
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 1351
BfaI CTAG 3 cut(s) 605, 789, 1053
BfmI CTRYAG 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 779
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 4 cut(s) 71, 74, 243, 1209
BlsI GCNGC 4 cut(s) 72, 75, 244, 1210
Bme1390I CCNGG 2 cut(s) 154, 664
Bme18I GGWCC 2 cut(s) 527, 1225
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 3 cut(s) 273, 527, 1225
BmiI GGNNCC 3 cut(s) 151, 866, 1226
BmrFI CCNGG 2 cut(s) 154, 664
BmsI GCATC 4 cut(s) 301, 936, 1152, 1309
BpmI CTGGAG 2 cut(s) 465, 1188
Bpu10I CCTNAGC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 568
BsaHI GRCGYC 2 cut(s) 287, 487
BsaJI CCNNGG 5 cut(s) 367, 662, 922, 1095, 1323
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 663, 877
Bse118I RCCGGY 5 cut(s) 8, 98, 169, 275, 1227
Bse1I ACTGG 5 cut(s) 448, 479, 803, 1159, 1171
Bse3DI GCAATG 3 cut(s) 286, 778, 1013
Bse8I GATNNNNATC 1 cut(s) 568
BseBI CCWGG 1 cut(s) 664
BseDI CCNNGG 5 cut(s) 367, 662, 922, 1095, 1323
BseGI GGATG 5 cut(s) 216, 316, 927, 1009, 1156
BseJI GATNNNNATC 1 cut(s) 568
BseLI CCNNNNNNNGG 3 cut(s) 102, 663, 877
BseMI GCAATG 3 cut(s) 286, 778, 1013
BseMII CTCAG 2 cut(s) 96, 251
BseNI ACTGG 5 cut(s) 448, 479, 803, 1159, 1171
BseXI GCAGC 4 cut(s) 57, 60, 229, 1195
BseYI CCCAGC 1 cut(s) 187
BsgI GTGCAG 2 cut(s) 59, 962
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 275, 1328
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 833
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 8 cut(s) 9, 35, 99, 114, 153, 170, 276, 1228
BslFI GGGAC 5 cut(s) 334, 385, 893, 1113, 1238
BslI CCNNNNNNNGG 3 cut(s) 102, 663, 877
BsmAI GTCTC 1 cut(s) 1351
BsmFI GGGAC 5 cut(s) 334, 385, 893, 1113, 1238
BsnI GGCC 2 cut(s) 275, 1328
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 195, 833
Bsp143I GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
BspACI CCGC 6 cut(s) 68, 96, 102, 119, 245, 593
BspANI GGCC 2 cut(s) 275, 1328
BspCNI CTCAG 2 cut(s) 95, 252
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 1272
BspLI GGNNCC 3 cut(s) 151, 866, 1226
BspMAI CTGCAG 1 cut(s) 619
BspQI GCTCTTC 1 cut(s) 838
BspT107I GGYRCC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 779
BsrDI GCAATG 3 cut(s) 286, 778, 1013
BsrFI RCCGGY 5 cut(s) 8, 98, 169, 275, 1227
BsrI ACTGG 5 cut(s) 448, 479, 803, 1159, 1171
BssAI RCCGGY 5 cut(s) 8, 98, 169, 275, 1227
BssECI CCNNGG 5 cut(s) 367, 662, 922, 1095, 1323
BssMI GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
BssNI GRCGYC 2 cut(s) 287, 487
BssT1I CCWWGG 2 cut(s) 922, 1095
Bst2UI CCWGG 1 cut(s) 664
Bst4CI ACNGT 4 cut(s) 65, 715, 1183, 1316
Bst6I CTCTTC 3 cut(s) 713, 838, 1043
BstACI GRCGYC 2 cut(s) 287, 487
BstAFI CTTAAG 1 cut(s) 779
BstAPI GCANNNNNTGC 1 cut(s) 985
BstC8I GCNNGC 5 cut(s) 100, 171, 277, 591, 595
BstDEI CTNAG 4 cut(s) 82, 260, 947, 1220
BstDSI CCRYGG 1 cut(s) 1323
BstF5I GGATG 5 cut(s) 216, 316, 927, 1009, 1156
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 3 cut(s) 119, 229, 1127
BstKTI GATC 6 cut(s) 144, 216, 393, 688, 768, 1036
BstMAI GTCTC 1 cut(s) 1351
BstMBI GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
BstMWI GCNNNNNNNGC 4 cut(s) 170, 667, 784, 985
BstNI CCWGG 1 cut(s) 664
BstSCI CCNGG 2 cut(s) 152, 662
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 57, 60, 229, 1195
BstXI CCANNNNNNTGG 3 cut(s) 810, 1146, 1166
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 2 cut(s) 275, 1328
BtgI CCRYGG 1 cut(s) 1323
BtsCI GGATG 5 cut(s) 216, 316, 927, 1009, 1156
BtsIMutI CAGTG 2 cut(s) 702, 1321
Cac8I GCNNGC 5 cut(s) 100, 171, 277, 591, 595
CciI TCATGA 1 cut(s) 1272
CfoI GCGC 3 cut(s) 119, 229, 1127
Cfr10I RCCGGY 5 cut(s) 8, 98, 169, 275, 1227
Cfr13I GGNCC 3 cut(s) 273, 527, 1225
CseI GACGC 2 cut(s) 276, 476
CviAII CATG 7 cut(s) 644, 658, 793, 985, 1232, 1273, 1355
DdeI CTNAG 4 cut(s) 82, 260, 947, 1220
DpnI GATC 6 cut(s) 143, 215, 392, 687, 767, 1035
DpnII GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
Eam1104I CTCTTC 3 cut(s) 713, 838, 1043
EarI CTCTTC 3 cut(s) 713, 838, 1043
Eco130I CCWWGG 2 cut(s) 922, 1095
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 527, 1225
Eco88I CYCGRG 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 662
EcoT14I CCWWGG 2 cut(s) 922, 1095
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 2 cut(s) 922, 1095
FaeI CATG 7 cut(s) 647, 661, 796, 988, 1235, 1276, 1358
FaqI GGGAC 5 cut(s) 334, 385, 893, 1113, 1238
FatI CATG 7 cut(s) 643, 657, 792, 984, 1231, 1272, 1354
FauI CCCGC 2 cut(s) 95, 586
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 2 cut(s) 134, 840
Fnu4HI GCNGC 4 cut(s) 71, 74, 243, 1209
FokI GGATG 5 cut(s) 223, 323, 914, 996, 1163
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 71, 74, 243, 1209
FspBI CTAG 3 cut(s) 605, 789, 1053
GlaI GCGC 3 cut(s) 118, 228, 1126
GluI GCNGC 4 cut(s) 71, 74, 243, 1209
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 2 cut(s) 465, 1188
HaeIII GGCC 2 cut(s) 275, 1328
HapII CCGG 8 cut(s) 9, 35, 99, 114, 153, 170, 276, 1228
HgaI GACGC 2 cut(s) 276, 476
HhaI GCGC 3 cut(s) 119, 229, 1127
Hin1I GRCGYC 2 cut(s) 287, 487
Hin1II CATG 7 cut(s) 647, 661, 796, 988, 1235, 1276, 1358
Hin6I GCGC 3 cut(s) 117, 227, 1125
HinP1I GCGC 3 cut(s) 117, 227, 1125
HincII GTYRAC 4 cut(s) 135, 361, 681, 1024
HindII GTYRAC 4 cut(s) 135, 361, 681, 1024
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 8 cut(s) 9, 35, 99, 114, 153, 170, 276, 1228
HphI GGTGA 3 cut(s) 413, 479, 1084
Hpy166II GTNNAC 8 cut(s) 135, 361, 681, 813, 841, 1024, 1164, 1293
Hpy188I TCNGA 3 cut(s) 43, 85, 197
Hpy188III TCNNGA 3 cut(s) 370, 414, 1273
Hpy8I GTNNAC 8 cut(s) 135, 361, 681, 813, 841, 1024, 1164, 1293
Hpy99I CGWCG 4 cut(s) 139, 142, 178, 292
HpyAV CCTTC 3 cut(s) 175, 449, 1056
HpyCH4III ACNGT 4 cut(s) 65, 715, 1183, 1316
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 6 cut(s) 76, 617, 760, 979, 1085, 1188
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 667, 784, 985
HpyF3I CTNAG 4 cut(s) 82, 260, 947, 1220
HpySE526I ACGT 1 cut(s) 692
Hsp92I GRCGYC 2 cut(s) 287, 487
Hsp92II CATG 7 cut(s) 647, 661, 796, 988, 1235, 1276, 1358
HspAI GCGC 3 cut(s) 117, 227, 1125
KroI GCCGGC 3 cut(s) 98, 169, 275
KroNI GCCGGC 3 cut(s) 100, 171, 277
Ksp22I TGATCA 1 cut(s) 390
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
LguI GCTCTTC 1 cut(s) 838
LmnI GCTCC 1 cut(s) 1169
Lsp1109I GCAGC 4 cut(s) 57, 60, 229, 1195
LweI GCATC 4 cut(s) 301, 936, 1152, 1309
MaeI CTAG 3 cut(s) 605, 789, 1053
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 2 cut(s) 505, 730
MalI GATC 6 cut(s) 143, 215, 392, 687, 767, 1035
MboI GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
MboII GAAGA 5 cut(s) 700, 825, 1030, 1108, 1192
MhlI GDGCHC 2 cut(s) 195, 833
MluCI AATT 1 cut(s) 1297
MlyI GAGTC 6 cut(s) 35, 47, 367, 875, 1029, 1095
MmeI TCCRAC 2 cut(s) 66, 432
MnlI CCTC 8 cut(s) 82, 232, 255, 277, 377, 878, 992, 1362
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 3 cut(s) 98, 169, 275
MroXI GAANNNNTTC 3 cut(s) 421, 553, 707
MseI TTAA 6 cut(s) 54, 360, 633, 780, 1088, 1334
MslI CAYNNNNRTG 1 cut(s) 753
MspA1I CMGCKG 2 cut(s) 70, 629
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 8 cut(s) 9, 35, 99, 114, 153, 170, 276, 1228
MspR9I CCNGG 2 cut(s) 154, 664
MvaI CCWGG 1 cut(s) 664
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 170, 667, 784, 985
NaeI GCCGGC 3 cut(s) 100, 171, 277
NciI CCSGG 1 cut(s) 154
NdeII GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
NgoMIV GCCGGC 3 cut(s) 98, 169, 275
NlaIII CATG 7 cut(s) 647, 661, 796, 988, 1235, 1276, 1358
NlaIV GGNNCC 3 cut(s) 151, 866, 1226
NmuCI GTSAC 1 cut(s) 730
PagI TCATGA 1 cut(s) 1272
PciSI GCTCTTC 1 cut(s) 838
PdiI GCCGGC 3 cut(s) 100, 171, 277
PdmI GAANNNNTTC 3 cut(s) 421, 553, 707
PfeI GAWTC 4 cut(s) 554, 621, 703, 796
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 72, 75, 244, 1210
PleI GAGTC 6 cut(s) 34, 46, 367, 875, 1028, 1095
PpsI GAGTC 6 cut(s) 34, 46, 367, 875, 1028, 1095
PshBI ATTAAT 1 cut(s) 1088
Psp6I CCWGG 1 cut(s) 662
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 662
PspN4I GGNNCC 3 cut(s) 151, 866, 1226
PspPI GGNCC 3 cut(s) 273, 527, 1225
PstI CTGCAG 1 cut(s) 619
PsyI GACNNNGTC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 629
RseI CAYNNNNRTG 1 cut(s) 753
SalI GTCGAC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 838
SaqAI TTAA 6 cut(s) 54, 360, 633, 780, 1088, 1334
SatI GCNGC 4 cut(s) 71, 74, 243, 1209
Sau3AI GATC 6 cut(s) 141, 213, 390, 685, 765, 1033
Sau96I GGNCC 3 cut(s) 273, 527, 1225
SchI GAGTC 6 cut(s) 35, 47, 367, 875, 1029, 1095
ScrFI CCNGG 2 cut(s) 154, 664
SduI GDGCHC 2 cut(s) 195, 833
SfaNI GCATC 4 cut(s) 301, 936, 1152, 1309
SfcI CTRYAG 1 cut(s) 615
SgrAI CRCCGGYG 2 cut(s) 8, 98
SinI GGWCC 2 cut(s) 527, 1225
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 1 cut(s) 1297
SsiI CCGC 6 cut(s) 68, 96, 102, 119, 245, 593
SspMI CTAG 3 cut(s) 605, 789, 1053
StyD4I CCNGG 2 cut(s) 152, 662
StyI CCWWGG 2 cut(s) 922, 1095
TaaI ACNGT 4 cut(s) 65, 715, 1183, 1316
TaiI ACGT 1 cut(s) 695
TaqI TCGA 1 cut(s) 134
TaqII GACCGA 1 cut(s) 38
TasI AATT 1 cut(s) 1297
TfiI GAWTC 4 cut(s) 554, 621, 703, 796
Tru1I TTAA 6 cut(s) 54, 360, 633, 780, 1088, 1334
Tru9I TTAA 6 cut(s) 54, 360, 633, 780, 1088, 1334
TscAI CASTG 2 cut(s) 702, 1321
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 4 cut(s) 70, 73, 242, 1208
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 8 cut(s) 194, 425, 546, 730, 998, 1038, 1123, 1261
TspGWI ACGGA 2 cut(s) 251, 519
TspRI CASTG 2 cut(s) 702, 1321
Tth111I GACNNNGTC 1 cut(s) 25
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 2 cut(s) 527, 1225
VspI ATTAAT 1 cut(s) 1088
XmiI GTMKAC 2 cut(s) 134, 840
XmnI GAANNNNTTC 3 cut(s) 421, 553, 707
XspI CTAG 3 cut(s) 605, 789, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.