Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000616

Physical Location & Seq

Genomic Coordinates Forward (+)

63941111 .. 63941410

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0508200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCAACCAAATGCAAGTTTTGCTTCTTTGAATCATCCGACCGTTCTGAACGAGTTTTGCATTTGAAAGATGACCACGAGAAGATGGAGTGCGGTGCGTGTGGAAAAACTTTCGACTGGAGCAAGCATGGCACTGCCTTGAAGAGCCACTTCAATGGCAAGCACGCTAAAGCTAAGCAGTTTGAATTTTGTAACAAGGAGGCCAGGATGCCTCACACCGGTTATTGCCCAAGGAACATCCTCCGAACACCGATGTGGAACTTAGTTGATCGGATCGATCATGTAACATTAGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071731 GO:0071732 GO:0097366 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04724 ko04727 ko04974 map04724 map04727 map04974

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

99

Amino Acids

11.51

Weight (kDa)

8.99

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30390 AT3G30390 AT3G30390 AT5G38820 AT5G38820 AT5G38820
fragaria_vesca	FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_4g28960 FvH4_6g46060 FvH4_6g46060 FvH4_6g46080
malus_domestica	MD09G1077200.v1.1 MD09G1077400.v1.1 MD15G1064300.v1.1 MD16G1053900.v1.1 MD17G1067600.v1.1 MD17G1067800.v1.1
prunus_persica	Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G418300_v2.0.a1 Prupe.3G246600_v2.0.a1 Prupe.3G246800_v2.0.a1 Prupe.3G246900_v2.0.a1
pyrus_communis	pycom09g00430 pycom09g00450 pycom15g06100 pycom16g04690 pycom17g06820
rosa_chinensis	RchiOBHm_Chr2g0164381 RchiOBHm_Chr2g0164401 RchiOBHm_Chr4g0437101 RchiOBHm_Chr6g0310121
rosa_laevigata	RLG00000006468 RLG00000010508 RLG00000021456 RLG00000021458
rosa_multiflora	Rmu_co8348867.1_g000001 Rmu_sc0000294.1_g000029 Rmu_sc0009487.1_g000003 Rmu_sc0018759.1_g000001 Rmu_sc0021401.1_g000003 Rmu_ssc0000006.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086590 Rroxscaffold_2G00086610 Rroxscaffold_5G00378170 Rroxscaffold_7G00158840
rosa_rugosa	Rorug02G0508200 Rorug02G0508300 Rorug04G0298000 Rorug06G0377600
rosa_samantha	Rh2AG576200 Rh2AG576400 Rh2BG587200 Rh2BG587400 Rh2CG558000 Rh2CG558200 Rh2DG596900 Rh2DG597200 Rh4AG352800 Rh4BG362300 Rh4CG376500 Rh4DG356300 Rh6AG491600 Rh6BG501000 Rh6CG506000 Rh6DG492100
rosa_wichuraiana	Rw2G047720 Rw2G047740 Rw2G047820 Rw2G047840 Rw4G030890 Rw6G042770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	32, 67, 142, 154, 185
AjnI	CCWGG	1 cut(s)	203
AleI	CACNNNNGTG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	173, 293, 297
AluI	AGCT	3 cut(s)	173, 293, 297
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	201
ApoI	RAATTY	1 cut(s)	185
AsiGI	ACCGGT	1 cut(s)	218
AsuNHI	GCTAGC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	77
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	205
BfaI	CTAG	2 cut(s)	294, 298
BlpI	GCTNAGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	198
BmtI	GCTAGC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	139
Bpu1102I	GCTNAGC	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	205
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	3 cut(s)	35, 213, 237
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	276
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	218
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	268, 273, 277
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	203
BspDI	ATCGAT	1 cut(s)	276
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	281
BspQI	GCTCTTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	3 cut(s)	268, 273, 277
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	4 cut(s)	125, 161, 165, 295
BstDEI	CTNAG	2 cut(s)	174, 262
BstF5I	GGATG	3 cut(s)	35, 213, 237
BstKTI	GATC	3 cut(s)	271, 276, 280
BstMBI	GATC	3 cut(s)	268, 273, 277
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 129
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	35, 213, 237
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	4 cut(s)	125, 161, 165, 295
Cfr10I	RCCGGY	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	276
CspAI	ACCGGT	1 cut(s)	218
CviAII	CATG	2 cut(s)	128, 281
CviJI	RGCY	5 cut(s)	147, 173, 203, 293, 297
CviKI_1	RGCY	5 cut(s)	147, 173, 203, 293, 297
DdeI	CTNAG	2 cut(s)	174, 262
DpnI	GATC	3 cut(s)	270, 275, 279
DpnII	GATC	3 cut(s)	268, 273, 277
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	2 cut(s)	131, 284
FaiI	YATR	2 cut(s)	129, 282
FalI	AAGNNNNNCTT	4 cut(s)	8, 40, 134, 166
FatI	CATG	2 cut(s)	127, 280
FokI	GGATG	3 cut(s)	22, 220, 224
FspBI	CTAG	2 cut(s)	294, 298
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	131, 284
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	40, 49, 245, 273
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	15, 61
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 129
HpyF3I	CTNAG	2 cut(s)	174, 262
Hsp92II	CATG	2 cut(s)	131, 284
Kzo9I	GATC	3 cut(s)	268, 273, 277
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	4 cut(s)	103, 190, 217, 232
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	294, 298
MaeIII	GTNAC	2 cut(s)	191, 283
MalI	GATC	3 cut(s)	270, 275, 279
MboI	GATC	3 cut(s)	268, 273, 277
MboII	GAAGA	2 cut(s)	94, 154
MluCI	AATT	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	3 cut(s)	193, 222, 251
MslI	CAYNNNNRTG	2 cut(s)	153, 253
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	21, 129
NdeII	GATC	3 cut(s)	268, 273, 277
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	131, 284
OliI	CACNNNNGTG	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
RseI	CAYNNNNRTG	2 cut(s)	153, 253
SapI	GCTCTTC	1 cut(s)	137
Sau3AI	GATC	3 cut(s)	268, 273, 277
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	3 cut(s)	175, 295, 299
SfaNI	GCATC	1 cut(s)	198
SmiMI	CAYNNNNRTG	2 cut(s)	153, 253
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	2 cut(s)	294, 298
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	114, 276
TasI	AATT	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	1 cut(s)	139
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	185
XspI	CTAG	2 cut(s)	294, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.