MD09G1077200.v1.1

Sodium-coupled neutral amino acid transporter 4-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
5429834 .. 5432219
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1077200.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGATTACTAGAGAAGATGAAAGCCAAAGCACCCCATTGCTGCCCACGAGTGAGAACGCAGAAGTTGAAGCTGGGTTTGCCGAACCCAGCAAACCCAGCGGAGGAGCTTCGTTCTATGGATCTGTGTTTAACTTGTCATGCACGGTTATCGGTTCCGGGATCATGAGCCTACCTGCAACTCTAACCATACTGGGACTGATCCCCGGAGTTGCGCTGATCGTCGTTGCTGCATTCCTGACAGAAGCATCCATTGAGATGCTACTGAGGTTCAGCAAGCCGGGTTCGGTGTTTTCGTATGGTGATCTCATGGGGGAAGCATTTGGAAAAGTTGGGAAGGTTTTGGTTCAGATTTGTGTTATTGTCAACAACATTGGTGCTCTCACTGTGTATATGATTATAATAGAGGATGTTCTTTCTGGTTCGACTTCAAGCGGAGTTCATCATGCCGGCATTTTGGAAGAGAGGTTAGGGGTGCATTGGTGGACCGGGCGTGCTTTCGTTCTGGTTGTCCTAACCGTTGTTGTATTTATTCCGTTGGTATGTTTTAAGCGCATCGATTCACTGCGATTCACGTCAGCTATATCGGTTGCGCTGGCAGTTGTTTTTCTCGTCGCTGTCATTGTGATCACAGTGTACAAATTCGTACTGGGAAGCATAGAGAGACCTGCATTGTTTCCCAGTGTCACTGATTTGCCTTCCTTTCTTAATCTTTTCACTGCATTCCCTGTTGTGGTTTTTGCTTATGTCTGCCACTACAATGTTCACACCATACAAAATGAGCTCAAAGATACTCCAACAATGCCAGCAATCGTGCGTGCTACAGTTGCTCTCTGCGCCGTTGTGTATGTGATGACAGGCCTGTTCGGGTTCCTCCTCTTCGGTGACTCAACTCTTTCCGACCTGCTCTCCAATTTTGACACAGACCTTGGCATTCCATACAGCTCTGTCTTCAATGACATCGTGCGAATCAGTTATGCCGCCCATATTTTACTTGTGTATCCCATTGGTTTTTTCCCTCTCCGGCTGAACTTGGACGGCCTTCTCTTCCCCTCAGCCAGACCGCTGGCTTCAGACAACGTAAGGTTTTCGTTGATCAGCGCCGGAATCATTGCCATCACCCTCTTGGGTGCCATATTCATACCGAGCATATGGGTGGCTTTTGAGTTCACAGGTGCAACTGTTGGAGCTCTGCTTGCATTCATCTTCCCTGCTTGCGTTGTTCTCAAGGACCCTCACGGAATTGCATGGAGAAAGGACAAGATTTTGTCAGTGTTCATGATCATTCTCGCTGTAATCTCAAGTGTGGTAGCCATTTGTAGTGATGCATATTCATTGTTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

47.95

Weight (kDa)

5.36

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 36 - 437 1e-57 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
Acc36I ACCTGC 3 cut(s) 181, 673, 909
AccB1I GGYRCC 1 cut(s) 1127
AciI CCGC 4 cut(s) 99, 432, 978, 1061
AclWI GGATC 3 cut(s) 127, 167, 193
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 1 cut(s) 1053
AfaI GTAC 2 cut(s) 635, 645
AfiI CCNNNNNNNGG 2 cut(s) 101, 730
AgsI TTSAA 3 cut(s) 68, 429, 952
AjiI CACGTC 1 cut(s) 573
AluBI AGCT 6 cut(s) 71, 107, 578, 781, 942, 1187
AluI AGCT 6 cut(s) 71, 107, 578, 781, 942, 1187
Alw21I GWGCWC 3 cut(s) 379, 783, 1189
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 3 cut(s) 127, 167, 193
AoxI GGCC 2 cut(s) 856, 1036
ApeKI GCWGC 2 cut(s) 40, 227
ApoI RAATTY 1 cut(s) 638
AspLEI GCGC 5 cut(s) 214, 552, 592, 836, 1100
AspS9I GGNCC 2 cut(s) 483, 1228
AsuC2I CCSGG 4 cut(s) 157, 204, 279, 487
AsuHPI GGTGA 3 cut(s) 311, 893, 1108
AvaII GGWCC 2 cut(s) 483, 1228
BaeI ACNNNNGTAYC 2 cut(s) 980, 1013
BanI GGYRCC 1 cut(s) 1127
BanII GRGCYC 2 cut(s) 783, 1189
BauI CACGAG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 940
Bbv12I GWGCWC 3 cut(s) 379, 783, 1189
BbvCI CCTCAGC 1 cut(s) 1051
BbvI GCAGC 2 cut(s) 27, 214
BccI CCATC 1 cut(s) 1121
BceAI ACGGC 2 cut(s) 821, 1051
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciVI GTATCC 1 cut(s) 1008
BclI TGATCA 3 cut(s) 624, 1092, 1278
BcnI CCSGG 4 cut(s) 157, 204, 279, 487
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 1101
BfuAI ACCTGC 3 cut(s) 181, 673, 909
BfuI GTATCC 1 cut(s) 1008
BisI GCNGC 3 cut(s) 41, 228, 978
BlsI GCNGC 3 cut(s) 42, 229, 979
Bme1390I CCNGG 4 cut(s) 157, 204, 279, 487
Bme18I GGWCC 2 cut(s) 483, 1228
BmgBI CACGTC 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 483, 1228
BmiI GGNNCC 4 cut(s) 154, 869, 1129, 1230
BmrFI CCNGG 4 cut(s) 157, 204, 279, 487
BmrI ACTGGG 3 cut(s) 200, 656, 672
BmsI GCATC 4 cut(s) 246, 254, 561, 1312
BmuI ACTGGG 3 cut(s) 200, 656, 672
BpiI GAAGAC 1 cut(s) 940
Bpu10I CCTNAGC 1 cut(s) 1051
BpuEI CTTGAG 2 cut(s) 1208, 1282
BpuMI CCSGG 4 cut(s) 157, 204, 279, 487
Bsa29I ATCGAT 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 655
BsaJI CCNNGG 2 cut(s) 202, 925
BsaXI ACNNNNNCTCC 2 cut(s) 890, 920
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 730
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 3 cut(s) 195, 651, 678
Bse3DI GCAATG 2 cut(s) 35, 1107
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 2 cut(s) 202, 925
BseGI GGATG 2 cut(s) 245, 412
BseLI CCNNNNNNNGG 2 cut(s) 101, 730
BseMI GCAATG 2 cut(s) 35, 1107
BseMII CTCAG 2 cut(s) 254, 1065
BseNI ACTGG 3 cut(s) 195, 651, 678
BseRI GAGGAG 2 cut(s) 117, 863
BseXI GCAGC 2 cut(s) 27, 214
BseYI CCCAGC 3 cut(s) 71, 86, 95
BshFI GGCC 2 cut(s) 858, 1038
BshNI GGYRCC 1 cut(s) 1127
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 3 cut(s) 379, 783, 1189
BsiSI CCGG 7 cut(s) 156, 204, 278, 447, 486, 1021, 1101
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 101, 730
BsmAI GTCTC 1 cut(s) 655
BsmFI GGGAC 1 cut(s) 207
BsmI GAATGC 4 cut(s) 230, 719, 930, 1196
BsnI GGCC 2 cut(s) 858, 1038
Bso31I GGTCTC 1 cut(s) 655
Bsp1286I GDGCHC 3 cut(s) 379, 783, 1189
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
BspACI CCGC 4 cut(s) 99, 432, 978, 1061
BspANI GGCC 2 cut(s) 858, 1038
BspCNI CTCAG 2 cut(s) 255, 1064
BspDI ATCGAT 1 cut(s) 555
BspHI TCATGA 2 cut(s) 162, 1275
BspLI GGNNCC 4 cut(s) 154, 869, 1129, 1230
BspMI ACCTGC 3 cut(s) 181, 673, 909
BspPI GGATC 3 cut(s) 127, 167, 193
BspT107I GGYRCC 1 cut(s) 1127
BspTNI GGTCTC 1 cut(s) 655
BsrDI GCAATG 2 cut(s) 35, 1107
BsrFI RCCGGY 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 3 cut(s) 195, 651, 678
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 202, 925
BssMI GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
BssSI CACGAG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 46
Bst4CI ACNGT 6 cut(s) 145, 385, 517, 631, 823, 1180
Bst6I CTCTTC 3 cut(s) 453, 881, 1049
BstAUI TGTACA 1 cut(s) 633
BstC8I GCNNGC 9 cut(s) 275, 448, 492, 594, 804, 816, 1065, 1194, 1213
BstDEI CTNAG 2 cut(s) 263, 1051
BstF5I GGATG 2 cut(s) 245, 412
BstH2I RGCGCY 1 cut(s) 1101
BstHHI GCGC 5 cut(s) 214, 552, 592, 836, 1100
BstKTI GATC 8 cut(s) 122, 162, 201, 219, 304, 627, 1095, 1281
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
BstMWI GCNNNNNNNGC 5 cut(s) 77, 96, 824, 833, 1193
BstSCI CCNGG 4 cut(s) 155, 202, 277, 485
BstSFI CTRYAG 1 cut(s) 819
BstV1I GCAGC 2 cut(s) 27, 214
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 1063
BstYI RGATCY 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 555
BsuI GTATCC 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 858, 1038
BsuTUI ATCGAT 1 cut(s) 555
BtrI CACGTC 1 cut(s) 573
BtsCI GGATG 2 cut(s) 245, 412
BtsI GCAGTG 2 cut(s) 560, 714
BtsIMutI CAGTG 7 cut(s) 381, 560, 636, 684, 685, 714, 1275
BveI ACCTGC 3 cut(s) 181, 673, 909
Cac8I GCNNGC 9 cut(s) 275, 448, 492, 594, 804, 816, 1065, 1194, 1213
CciI TCATGA 2 cut(s) 162, 1275
CfoI GCGC 5 cut(s) 214, 552, 592, 836, 1100
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 483, 1228
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 2 cut(s) 634, 644
CviAII CATG 6 cut(s) 138, 163, 307, 443, 1245, 1276
CviQI GTAC 2 cut(s) 634, 644
DdeI CTNAG 2 cut(s) 263, 1051
DpnI GATC 8 cut(s) 121, 161, 200, 218, 303, 626, 1094, 1280
DpnII GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
Eam1104I CTCTTC 3 cut(s) 453, 881, 1049
EarI CTCTTC 3 cut(s) 453, 881, 1049
Ecl136II GAGCTC 2 cut(s) 781, 1187
Eco130I CCWWGG 1 cut(s) 925
Eco147I AGGCCT 1 cut(s) 858
Eco24I GRGCYC 2 cut(s) 783, 1189
Eco31I GGTCTC 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 483, 1228
Eco53kI GAGCTC 2 cut(s) 781, 1187
Eco57I CTGAAG 1 cut(s) 1053
EcoICRI GAGCTC 2 cut(s) 781, 1187
EcoO109I RGGNCCY 1 cut(s) 1228
EcoT14I CCWWGG 1 cut(s) 925
EcoT22I ATGCAT 1 cut(s) 1327
EcoT38I GRGCYC 2 cut(s) 783, 1189
ErhI CCWWGG 1 cut(s) 925
FaeI CATG 6 cut(s) 141, 166, 310, 446, 1248, 1279
FaqI GGGAC 1 cut(s) 207
FatI CATG 6 cut(s) 137, 162, 306, 442, 1244, 1275
FauNDI CATATG 1 cut(s) 1148
FbaI TGATCA 3 cut(s) 624, 1092, 1278
Fnu4HI GCNGC 3 cut(s) 41, 228, 978
FokI GGATG 2 cut(s) 232, 419
FriOI GRGCYC 2 cut(s) 783, 1189
Fsp4HI GCNGC 3 cut(s) 41, 228, 978
FspBI CTAG 1 cut(s) 9
GlaI GCGC 5 cut(s) 213, 551, 591, 835, 1099
GluI GCNGC 3 cut(s) 41, 228, 978
GsaI CCCAGC 3 cut(s) 75, 90, 99
HaeII RGCGCY 1 cut(s) 1101
HaeIII GGCC 2 cut(s) 858, 1038
HapII CCGG 7 cut(s) 156, 204, 278, 447, 486, 1021, 1101
HhaI GCGC 5 cut(s) 214, 552, 592, 836, 1100
Hin1II CATG 6 cut(s) 141, 166, 310, 446, 1248, 1279
Hin6I GCGC 5 cut(s) 212, 550, 590, 834, 1098
HinP1I GCGC 5 cut(s) 212, 550, 590, 834, 1098
HincII GTYRAC 2 cut(s) 364, 1338
HindII GTYRAC 2 cut(s) 364, 1338
HinfI GANTC 5 cut(s) 557, 567, 884, 966, 1104
HpaII CCGG 7 cut(s) 156, 204, 278, 447, 486, 1021, 1101
HphI GGTGA 3 cut(s) 311, 893, 1108
Hpy166II GTNNAC 6 cut(s) 364, 483, 634, 763, 1167, 1338
Hpy188I TCNGA 3 cut(s) 348, 898, 1072
Hpy188III TCNNGA 3 cut(s) 163, 235, 1276
Hpy8I GTNNAC 6 cut(s) 364, 483, 634, 763, 1167, 1338
Hpy99I CGWCG 2 cut(s) 224, 614
HpyAV CCTTC 3 cut(s) 328, 705, 1049
HpyCH4III ACNGT 6 cut(s) 145, 385, 517, 631, 823, 1180
HpyCH4IV ACGT 2 cut(s) 572, 1077
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 96, 824, 833, 1193
HpyF3I CTNAG 2 cut(s) 263, 1051
HpySE526I ACGT 2 cut(s) 572, 1077
Hsp92II CATG 6 cut(s) 141, 166, 310, 446, 1248, 1279
HspAI GCGC 5 cut(s) 212, 550, 590, 834, 1098
KroI GCCGGC 1 cut(s) 446
KroNI GCCGGC 1 cut(s) 448
Ksp22I TGATCA 3 cut(s) 624, 1092, 1278
Kzo9I GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
LmnI GCTCC 2 cut(s) 104, 1184
Lsp1109I GCAGC 2 cut(s) 27, 214
LweI GCATC 4 cut(s) 246, 254, 561, 1312
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 572, 1077
MaeIII GTNAC 2 cut(s) 682, 881
MalI GATC 8 cut(s) 121, 161, 200, 218, 303, 626, 1094, 1280
MboI GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
MboII GAAGA 6 cut(s) 26, 470, 868, 940, 1036, 1195
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 3 cut(s) 379, 783, 1189
MluCI AATT 3 cut(s) 638, 910, 1239
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 3 cut(s) 818, 921, 1162
Mph1103I ATGCAT 1 cut(s) 1327
MroNI GCCGGC 1 cut(s) 446
MseI TTAA 3 cut(s) 129, 546, 705
MslI CAYNNNNRTG 3 cut(s) 254, 756, 1151
MspA1I CMGCKG 2 cut(s) 99, 1063
MspI CCGG 7 cut(s) 156, 204, 278, 447, 486, 1021, 1101
MspR9I CCNGG 4 cut(s) 157, 204, 279, 487
Mva1269I GAATGC 4 cut(s) 230, 719, 930, 1196
MwoI GCNNNNNNNGC 5 cut(s) 77, 96, 824, 833, 1193
NaeI GCCGGC 1 cut(s) 448
NciI CCSGG 4 cut(s) 157, 204, 279, 487
NdeI CATATG 1 cut(s) 1148
NdeII GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
NgoMIV GCCGGC 1 cut(s) 446
NlaIII CATG 6 cut(s) 141, 166, 310, 446, 1248, 1279
NlaIV GGNNCC 4 cut(s) 154, 869, 1129, 1230
NmuCI GTSAC 2 cut(s) 682, 881
NsiI ATGCAT 1 cut(s) 1327
PagI TCATGA 2 cut(s) 162, 1275
PceI AGGCCT 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PctI GAATGC 4 cut(s) 230, 719, 930, 1196
PdiI GCCGGC 1 cut(s) 448
PfeI GAWTC 4 cut(s) 557, 567, 966, 1104
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 3 cut(s) 42, 229, 979
PleI GAGTC 1 cut(s) 878
PpsI GAGTC 1 cut(s) 878
PpuMI RGGWCCY 1 cut(s) 1228
PsiI TTATAA 1 cut(s) 398
Psp124BI GAGCTC 2 cut(s) 783, 1189
Psp5II RGGWCCY 1 cut(s) 1228
PspFI CCCAGC 3 cut(s) 71, 86, 95
PspN4I GGNNCC 4 cut(s) 154, 869, 1129, 1230
PspPI GGNCC 2 cut(s) 483, 1228
PspPPI RGGWCCY 1 cut(s) 1228
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 635, 645
RsaNI GTAC 2 cut(s) 634, 644
RseI CAYNNNNRTG 3 cut(s) 254, 756, 1151
SacI GAGCTC 2 cut(s) 783, 1189
SaqAI TTAA 3 cut(s) 129, 546, 705
SatI GCNGC 3 cut(s) 41, 228, 978
Sau3AI GATC 8 cut(s) 119, 159, 198, 216, 301, 624, 1092, 1278
Sau96I GGNCC 2 cut(s) 483, 1228
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 4 cut(s) 157, 204, 279, 487
SduI GDGCHC 3 cut(s) 379, 783, 1189
SfaNI GCATC 4 cut(s) 246, 254, 561, 1312
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 2 cut(s) 483, 1228
SmiMI CAYNNNNRTG 3 cut(s) 254, 756, 1151
SmlI CTYRAG 2 cut(s) 1223, 1297
SmoI CTYRAG 2 cut(s) 1223, 1297
Sse9I AATT 3 cut(s) 638, 910, 1239
SseBI AGGCCT 1 cut(s) 858
SsiI CCGC 4 cut(s) 99, 432, 978, 1061
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 2 cut(s) 783, 1189
StuI AGGCCT 1 cut(s) 858
StyD4I CCNGG 4 cut(s) 155, 202, 277, 485
StyI CCWWGG 1 cut(s) 925
TaaI ACNGT 6 cut(s) 145, 385, 517, 631, 823, 1180
TaiI ACGT 2 cut(s) 575, 1080
TaqI TCGA 2 cut(s) 422, 555
TasI AATT 3 cut(s) 638, 910, 1239
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 980
TfiI GAWTC 4 cut(s) 557, 567, 966, 1104
Tru1I TTAA 3 cut(s) 129, 546, 705
Tru9I TTAA 3 cut(s) 129, 546, 705
TscAI CASTG 7 cut(s) 388, 567, 636, 685, 691, 721, 1275
TseFI GTSAC 2 cut(s) 682, 881
TseI GCWGC 2 cut(s) 40, 227
Tsp45I GTSAC 2 cut(s) 682, 881
TspDTI ATGAA 6 cut(s) 33, 428, 1126, 1189, 1264, 1320
TspGWI ACGGA 2 cut(s) 522, 1251
TspRI CASTG 7 cut(s) 388, 567, 636, 685, 691, 721, 1275
VpaK11BI GGWCC 2 cut(s) 483, 1228
XapI RAATTY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.