Rmu_sc0009487.1_g000003

sodium-coupled neutral amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009487.1
OG0000616
Physical Location & Seq
Reverse (-)
14995 .. 17425
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009487.1_g000003.1.cds

Sequence Viewer

Length: 1113 bp
atgacttctgaaagcaaacgaaactccaatgagagagcccctttgttacgaaagactcaacatggagatgaagatgaggccaggagtgagaagtattctggagcatccttctatggttgtgtgttcaatttgacatgcaccattgtcggttccggaatcatgagcctgcctgcaaccctcaaattgttgggactcattccgggggtcgtgttgatcatcctagtatcattcataatcgaggcatcggttgagttgttgttgaggttcagcaaggaagggtctgcagtttcctatggtgatgtcatggctcatgcatatggaaggattgggaagattgtacttcagatcaccattgttatttacagcactgggtggtttggagagcattggtggactagccgcgccttcgttcttgttgctgtaactgtcatcatattttttccattgatgttctttgagcgcatcgttgtctatgtaatgacaggaattttcgggttcctccttttcggtgaatcaactatctccgacttactgtccaactttgacactgatcttggcattccctacagctggctgttcaatgacattattcgcattagctatgccgcgcatgtcatactagtttttcccaccatattcttacctctgcgactcaacttggacggcctccttttccccactgcaagacctctgactttagacaagaagagatttgtgttggaaagtatagggcttgtgtttatttcccttgtgggtgcaatattcatacccaacatttgggtagctttcgagttctctggagcaaccctgggaggtttacttgcatttgtgtttcctgctttcattactctcaatgatagaaccagccttataagacactggggtgcggtgcatgttggaaccagggagcttgagagcttggggtgggctgggctgggactagactgcggatgtgctggtagtctaggaattggtgtcggcctagatgggagcacaaatggggagaccagtgatagaaccagccttataagacactggggtgcggtgcatgttggaaccagggagcttgagagcttggggtgggctgggactagactgcggatgtgctggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04724 ko04727 ko04974 map04724 map04727 map04974
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

370

Amino Acids

40.67

Weight (kDa)

6.25

Isoelectric Point (pI)

22.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000616)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30390 AT3G30390 AT3G30390 AT5G38820 AT5G38820 AT5G38820
fragaria_vesca FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_2g32550 FvH4_4g28960 FvH4_6g46060 FvH4_6g46060 FvH4_6g46080
malus_domestica MD09G1077200.v1.1 MD09G1077400.v1.1 MD15G1064300.v1.1 MD16G1053900.v1.1 MD17G1067600.v1.1 MD17G1067800.v1.1
prunus_persica Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G295800_v2.0.a1 Prupe.1G418300_v2.0.a1 Prupe.3G246600_v2.0.a1 Prupe.3G246800_v2.0.a1 Prupe.3G246900_v2.0.a1
pyrus_communis pycom09g00430 pycom09g00450 pycom15g06100 pycom16g04690 pycom17g06820
rosa_chinensis RchiOBHm_Chr2g0164381 RchiOBHm_Chr2g0164401 RchiOBHm_Chr4g0437101 RchiOBHm_Chr6g0310121
rosa_laevigata RLG00000006468 RLG00000010508 RLG00000021456 RLG00000021458
rosa_multiflora Rmu_co8348867.1_g000001 Rmu_sc0000294.1_g000029 Rmu_sc0009487.1_g000003 Rmu_sc0018759.1_g000001 Rmu_sc0021401.1_g000003 Rmu_ssc0000006.1_g000009
rosa_roxburghii Rroxscaffold_2G00086590 Rroxscaffold_2G00086610 Rroxscaffold_5G00378170 Rroxscaffold_7G00158840
rosa_rugosa Rorug02G0508200 Rorug02G0508300 Rorug04G0298000 Rorug06G0377600
rosa_samantha Rh2AG576200 Rh2AG576400 Rh2BG587200 Rh2BG587400 Rh2CG558000 Rh2CG558200 Rh2DG596900 Rh2DG597200 Rh4AG352800 Rh4BG362300 Rh4CG376500 Rh4DG356300 Rh6AG491600 Rh6BG501000 Rh6CG506000 Rh6DG492100
rosa_wichuraiana Rw2G047720 Rw2G047740 Rw2G047820 Rw2G047840 Rw4G030890 Rw6G042770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 872, 1028
AccB7I CCANNNNNTGG 1 cut(s) 777
AccII CGCG 2 cut(s) 402, 608
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 6 cut(s) 400, 606, 887, 948, 1043, 1099
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 372
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 570, 777
AgsI TTSAA 2 cut(s) 127, 580
AhdI GACNNNNNGTC 1 cut(s) 532
AhlI ACTAGT 1 cut(s) 619
AjnI CCWGG 4 cut(s) 80, 807, 902, 1058
AleI CACNNNNGTG 2 cut(s) 882, 1038
AluBI AGCT 7 cut(s) 570, 600, 785, 910, 918, 1066, 1074
AluI AGCT 7 cut(s) 570, 600, 785, 910, 918, 1066, 1074
Alw21I GWGCWC 1 cut(s) 995
Alw26I GTCTC 1 cut(s) 998
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 3 cut(s) 78, 664, 979
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 3 cut(s) 404, 462, 610
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 308, 340, 521
BanII GRGCYC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 995
BccI CCATC 1 cut(s) 980
BceAI ACGGC 1 cut(s) 679
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 4 cut(s) 82, 809, 904, 1060
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 998
BcuI ACTAGT 1 cut(s) 619
BfaI CTAG 7 cut(s) 221, 396, 620, 941, 965, 983, 1092
BfmI CTRYAG 2 cut(s) 282, 565
BisI GCNGC 2 cut(s) 400, 606
BlsI GCNGC 2 cut(s) 401, 607
Bme1390I CCNGG 5 cut(s) 82, 201, 809, 904, 1060
BmeRI GACNNNNNGTC 1 cut(s) 532
BmiI GGNNCC 4 cut(s) 151, 497, 901, 1057
BmrFI CCNGG 5 cut(s) 82, 201, 809, 904, 1060
BmrI ACTGGG 3 cut(s) 378, 889, 1045
BmsI GCATC 3 cut(s) 113, 251, 471
BmuI ACTGGG 3 cut(s) 378, 889, 1045
BpmI CTGGAG 2 cut(s) 120, 819
BpuEI CTTGAG 2 cut(s) 932, 1088
BpuMI CCSGG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 5 cut(s) 200, 807, 808, 903, 1059
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 777
Bse1I ACTGG 4 cut(s) 373, 884, 1008, 1040
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 4 cut(s) 82, 809, 904, 1060
BseDI CCNNGG 5 cut(s) 200, 807, 808, 903, 1059
BseGI GGATG 4 cut(s) 104, 216, 956, 1107
BseLI CCNNNNNNNGG 2 cut(s) 570, 777
BseNI ACTGG 4 cut(s) 373, 884, 1008, 1040
BseYI CCCAGC 3 cut(s) 929, 934, 1085
Bsh1236I CGCG 2 cut(s) 402, 608
BshFI GGCC 3 cut(s) 80, 666, 981
BsiHKAI GWGCWC 1 cut(s) 995
BsiSI CCGG 2 cut(s) 153, 200
BslFI GGGAC 3 cut(s) 204, 951, 1102
BslI CCNNNNNNNGG 2 cut(s) 570, 777
BsmAI GTCTC 1 cut(s) 998
BsmFI GGGAC 3 cut(s) 204, 951, 1102
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 3 cut(s) 80, 666, 981
Bso31I GGTCTC 1 cut(s) 998
Bsp1286I GDGCHC 2 cut(s) 40, 995
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 3 cut(s) 213, 345, 550
BspACI CCGC 6 cut(s) 400, 606, 887, 948, 1043, 1099
BspANI GGCC 3 cut(s) 80, 666, 981
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 2 cut(s) 402, 608
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 4 cut(s) 151, 497, 901, 1057
BspMAI CTGCAG 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 998
BsrI ACTGG 4 cut(s) 373, 884, 1008, 1040
BssECI CCNNGG 5 cut(s) 200, 807, 808, 903, 1059
BssMI GATC 3 cut(s) 213, 345, 550
Bst2UI CCWGG 4 cut(s) 82, 809, 904, 1060
Bst4CI ACNGT 2 cut(s) 427, 534
Bst6I CTCTTC 1 cut(s) 701
BstC8I GCNNGC 3 cut(s) 167, 171, 572
BstF5I GGATG 4 cut(s) 104, 216, 956, 1107
BstFNI CGCG 2 cut(s) 402, 608
BstHHI GCGC 3 cut(s) 404, 462, 610
BstKTI GATC 3 cut(s) 216, 348, 553
BstMAI GTCTC 1 cut(s) 998
BstMBI GATC 3 cut(s) 213, 345, 550
BstNI CCWGG 4 cut(s) 82, 809, 904, 1060
BstNSI RCATGY 4 cut(s) 138, 614, 896, 1052
BstSCI CCNGG 5 cut(s) 80, 199, 807, 902, 1058
BstSFI CTRYAG 2 cut(s) 282, 565
BstUI CGCG 2 cut(s) 402, 608
BsuRI GGCC 3 cut(s) 80, 666, 981
BtsCI GGATG 4 cut(s) 104, 216, 956, 1107
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 6 cut(s) 366, 546, 678, 877, 1015, 1033
Cac8I GCNNGC 3 cut(s) 167, 171, 572
CciI TCATGA 1 cut(s) 159
CfoI GCGC 3 cut(s) 404, 462, 610
Csp6I GTAC 1 cut(s) 338
CviAII CATG 8 cut(s) 62, 135, 160, 304, 311, 611, 893, 1049
CviQI GTAC 1 cut(s) 338
DpnI GATC 3 cut(s) 215, 347, 552
DpnII GATC 3 cut(s) 213, 345, 550
DraIII CACNNNGTG 1 cut(s) 372
DriI GACNNNNNGTC 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 701
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 998
Eco57I CTGAAG 1 cut(s) 326
EcoRII CCWGG 4 cut(s) 80, 807, 902, 1058
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 8 cut(s) 65, 138, 163, 307, 314, 614, 896, 1052
FaqI GGGAC 3 cut(s) 204, 951, 1102
FatI CATG 8 cut(s) 61, 134, 159, 303, 310, 610, 892, 1048
FauNDI CATATG 1 cut(s) 316
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 400, 606
FokI GGATG 3 cut(s) 91, 203, 963
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 400, 606
FspBI CTAG 7 cut(s) 221, 396, 620, 941, 965, 983, 1092
GlaI GCGC 3 cut(s) 403, 461, 609
GluI GCNGC 2 cut(s) 400, 606
GsaI CCCAGC 3 cut(s) 933, 938, 1089
GsuI CTGGAG 2 cut(s) 120, 819
HaeIII GGCC 3 cut(s) 80, 666, 981
HapII CCGG 2 cut(s) 153, 200
HhaI GCGC 3 cut(s) 404, 462, 610
Hin1II CATG 8 cut(s) 65, 138, 163, 307, 314, 614, 896, 1052
Hin6I GCGC 3 cut(s) 402, 460, 608
HinP1I GCGC 3 cut(s) 402, 460, 608
HinfI GANTC 5 cut(s) 55, 156, 192, 512, 651
HpaII CCGG 2 cut(s) 153, 200
HphI GGTGA 3 cut(s) 308, 340, 521
Hpy166II GTNNAC 2 cut(s) 393, 818
Hpy188I TCNGA 4 cut(s) 10, 345, 526, 693
Hpy188III TCNNGA 4 cut(s) 99, 153, 160, 798
Hpy8I GTNNAC 2 cut(s) 393, 818
HpyAV CCTTC 4 cut(s) 118, 269, 315, 415
HpyCH4III ACNGT 2 cut(s) 427, 534
HpyCH4V TGCA 9 cut(s) 138, 173, 284, 314, 683, 758, 824, 892, 1048
Hsp92II CATG 8 cut(s) 65, 138, 163, 307, 314, 614, 896, 1052
HspAI GCGC 3 cut(s) 402, 460, 608
Kpn2I TCCGGA 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 3 cut(s) 213, 345, 550
LmnI GCTCC 5 cut(s) 101, 800, 907, 990, 1063
LweI GCATC 3 cut(s) 113, 251, 471
MaeI CTAG 7 cut(s) 221, 396, 620, 941, 965, 983, 1092
MaeIII GTNAC 2 cut(s) 45, 421
MalI GATC 3 cut(s) 215, 347, 552
MboI GATC 3 cut(s) 213, 345, 550
MboII GAAGA 3 cut(s) 83, 343, 718
MhlI GDGCHC 2 cut(s) 40, 995
MluCI AATT 4 cut(s) 127, 182, 486, 969
MlyI GAGTC 3 cut(s) 49, 186, 645
MmeI TCCRAC 5 cut(s) 549, 561, 699, 877, 1033
MnlI CCTC 9 cut(s) 70, 188, 232, 255, 509, 654, 677, 699, 806
Mph1103I ATGCAT 1 cut(s) 316
MroI TCCGGA 1 cut(s) 152
MslI CAYNNNNRTG 4 cut(s) 66, 315, 882, 1038
MspA1I CMGCKG 1 cut(s) 570
MspI CCGG 2 cut(s) 153, 200
MspR9I CCNGG 5 cut(s) 82, 201, 809, 904, 1060
Mva1269I GAATGC 1 cut(s) 558
MvaI CCWGG 4 cut(s) 82, 809, 904, 1060
MvnI CGCG 2 cut(s) 402, 608
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 316
NdeII GATC 3 cut(s) 213, 345, 550
NlaIII CATG 8 cut(s) 65, 138, 163, 307, 314, 614, 896, 1052
NlaIV GGNNCC 4 cut(s) 151, 497, 901, 1057
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 4 cut(s) 138, 614, 896, 1052
OliI CACNNNNGTG 2 cut(s) 882, 1038
PagI TCATGA 1 cut(s) 159
PasI CCCWGGG 1 cut(s) 808
PctI GAATGC 1 cut(s) 558
PfeI GAWTC 2 cut(s) 156, 512
PflMI CCANNNNNTGG 1 cut(s) 777
PkrI GCNGC 2 cut(s) 401, 607
PleI GAGTC 3 cut(s) 49, 186, 645
PpsI GAGTC 3 cut(s) 49, 186, 645
PsiI TTATAA 2 cut(s) 872, 1028
Psp6I CCWGG 4 cut(s) 80, 807, 902, 1058
PspFI CCCAGC 3 cut(s) 929, 934, 1085
PspGI CCWGG 4 cut(s) 80, 807, 902, 1058
PspN4I GGNNCC 4 cut(s) 151, 497, 901, 1057
PstI CTGCAG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 570
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 4 cut(s) 66, 315, 882, 1038
SatI GCNGC 2 cut(s) 400, 606
Sau3AI GATC 3 cut(s) 213, 345, 550
SchI GAGTC 3 cut(s) 49, 186, 645
ScrFI CCNGG 5 cut(s) 82, 201, 809, 904, 1060
SduI GDGCHC 2 cut(s) 40, 995
SfaNI GCATC 3 cut(s) 113, 251, 471
SfcI CTRYAG 2 cut(s) 282, 565
SmiMI CAYNNNNRTG 4 cut(s) 66, 315, 882, 1038
SmlI CTYRAG 2 cut(s) 911, 1067
SmoI CTYRAG 2 cut(s) 911, 1067
SpeI ACTAGT 1 cut(s) 619
Sse9I AATT 4 cut(s) 127, 182, 486, 969
SsiI CCGC 6 cut(s) 400, 606, 887, 948, 1043, 1099
SspI AATATT 1 cut(s) 762
SspMI CTAG 7 cut(s) 221, 396, 620, 941, 965, 983, 1092
StyD4I CCNGG 5 cut(s) 80, 199, 807, 902, 1058
TaaI ACNGT 2 cut(s) 427, 534
TaqI TCGA 2 cut(s) 237, 789
TasI AATT 4 cut(s) 127, 182, 486, 969
TatI WGTACW 1 cut(s) 337
TauI GCSGC 2 cut(s) 402, 608
TfiI GAWTC 2 cut(s) 156, 512
TscAI CASTG 6 cut(s) 373, 553, 685, 884, 1015, 1040
TspDTI ATGAA 4 cut(s) 84, 220, 754, 832
TspRI CASTG 6 cut(s) 373, 553, 685, 884, 1015, 1040
Van91I CCANNNNNTGG 1 cut(s) 777
XapI RAATTY 1 cut(s) 486
XceI RCATGY 4 cut(s) 138, 614, 896, 1052
XspI CTAG 7 cut(s) 221, 396, 620, 941, 965, 983, 1092
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.