AT5G38820

amino acid transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
15543115 .. 15545448
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38820.1

Sequence Viewer

Length: 1371 bp
ATGGAGAATCTAGATGAAATCCGTACCGATATTGTCGAATCTACTGCTCCGTTGTTGCAAGAATCATCATCAGAGAGCAACGGAGGAGGAGAATTCAACGGAGCTTCGTTTAGTGGTGCGGTTTTCAATCTCGCTACAACGATCATCGGAGCTGGTATCATGGCATTGCCTGCGACGATGAAGATCCTCGGTCTTATTCCCGGAATCACGATCATCGTTCTCATGGCTTTCTTAACCGATGCTTCGATTGAGTTCTTGCTTAGGTTTAGTAACATTGGGAATCAAAGATCTTACGGTGGTGTTATGGATGATTCTTTTGGTAAATGTGGAAGGATTATGTTGCAAGTTTCGATTCTCGTTAGCAACATTGGTGTTTTGATCGTTTATATGATCATCATTGGTGATGTTTTGGCTGGTAAGAATGAATATGGAATCCATCATGCTGGTATGCTTGAAGGATGGTTTGGGATTAGTTGGTGGAACAGAAGAACTTTTGTTCTTCTTGTTACTACTCTCACTGTCTTTGCTCCATTGACTTGCTTCAAACGAATTGATTCTTTGAGATTCACATCTGCTATATCAGTTGCTTTAGCGGTTGTTTTTCTTGTCATCACTGCTGGAATTACTATCATTAAGCTGTTTACTGATGGTTTGATGATGCCGAGACTTCTACCTAATGTCACTGACTTGTCGTCGTTTTGGAAACTCTTCACGGTTGTTCCTGTGCTTGTCAATGCATACATTTGCCATTACAATGTTCATAGTATACAGAACGAGCTTGAAGACCCTTCTCGGATAAAACCTGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTTTACGTTATGACGAGTTTATTCGGATACCTCTTATTCGGTGATGGTACTCTTGATGATGTTCTTGCAAACTTTGACACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTGAGATTTAGCTACGCAGCTCATCTCATGCTTGTGTTCCCTGTTGTCTTCTATCCTCTGCGGATTAACATCGACGGTCTCATCTTTCCTACGGCTCCACCACTTACTTCCTCTGAGTCTGATCTGAGGTTTGGCTCTATTACTGCTGGTCTCATTGCTGTAATCTTCTTGGGAGCAAACTTCATACCAAGCATTTGGGATGCTTTCCAATTTACTGGAGCAACTGCTGCTGTCTGCATCGGTTTCATATTCCCTGCTGCTGTTATCTTAAAGGATCGTCATAACCAAGCAACCAAGCGAGACAAGACTATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAATGCAATCGCCATTTACAGTGACGCCTACGCCTTATTCAAGAAGCACACATACGTATATCCAATATGA

Protein Analysis

456

Amino Acids

49.68

Weight (kDa)

5.65

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 35 - 441 2.8e-57 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 36 - 263 1e-10 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000616)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 766
AciI CCGC 4 cut(s) 119, 593, 1018, 1292
AclWI GGATC 3 cut(s) 178, 927, 1239
AcsI RAATTY 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 1326
AfaI GTAC 2 cut(s) 25, 886
AgsI TTSAA 6 cut(s) 97, 127, 455, 544, 782, 1342
AhdI GACNNNNNGTC 1 cut(s) 691
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 6 cut(s) 104, 152, 637, 778, 969, 977
AluI AGCT 6 cut(s) 104, 152, 637, 778, 969, 977
Alw26I GTCTC 4 cut(s) 658, 1040, 1112, 1251
AlwI GGATC 3 cut(s) 178, 927, 1239
ApeKI GCWGC 3 cut(s) 974, 1184, 1214
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 2 cut(s) 553, 707
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 413, 890
BarI GAAGNNNNNNTAC 2 cut(s) 1337, 1369
BbsI GAAGAC 2 cut(s) 789, 997
BbvI GCAGC 3 cut(s) 986, 1171, 1201
BccI CCATC 4 cut(s) 444, 453, 641, 875
BceAI ACGGC 1 cut(s) 1065
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciVI GTATCC 1 cut(s) 857
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 4 cut(s) 658, 1040, 1112, 1251
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 1266
BfuI GTATCC 1 cut(s) 857
BglII AGATCT 1 cut(s) 287
BisI GCNGC 3 cut(s) 975, 1185, 1215
BlsI GCNGC 3 cut(s) 976, 1186, 1216
Bme1390I CCNGG 1 cut(s) 201
BmeRI GACNNNNNGTC 1 cut(s) 691
BmiI GGNNCC 1 cut(s) 1053
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 5 cut(s) 229, 648, 943, 1147, 1203
BpiI GAAGAC 2 cut(s) 789, 997
BpmI CTGGAG 1 cut(s) 1194
Bpu10I CCTNAGC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 1357
BsaBI GATNNNNATC 3 cut(s) 182, 568, 1025
BsaHI GRCGYC 1 cut(s) 1326
BsaI GGTCTC 2 cut(s) 1040, 1112
BsaJI CCNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 1177
Bse3DI GCAATG 2 cut(s) 164, 1110
Bse8I GATNNNNATC 3 cut(s) 182, 568, 1025
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 3 cut(s) 313, 464, 1162
BseJI GATNNNNATC 3 cut(s) 182, 568, 1025
BseMI GCAATG 2 cut(s) 164, 1110
BseMII CTCAG 2 cut(s) 1062, 1073
BseNI ACTGG 1 cut(s) 1177
BseRI GAGGAG 2 cut(s) 99, 102
BseXI GCAGC 3 cut(s) 986, 1171, 1201
BsiSI CCGG 1 cut(s) 201
BsmAI GTCTC 4 cut(s) 658, 1040, 1112, 1251
Bso31I GGTCTC 2 cut(s) 1040, 1112
BspACI CCGC 4 cut(s) 119, 593, 1018, 1292
BspCNI CTCAG 2 cut(s) 1063, 1074
BspLI GGNNCC 1 cut(s) 1053
BspPI GGATC 3 cut(s) 178, 927, 1239
BspTNI GGTCTC 2 cut(s) 1040, 1112
BsrDI GCAATG 2 cut(s) 164, 1110
BsrI ACTGG 1 cut(s) 1177
BssECI CCNNGG 1 cut(s) 187
BssNAI GTATAC 1 cut(s) 767
BssNI GRCGYC 1 cut(s) 1326
Bst1107I GTATAC 1 cut(s) 767
Bst4CI ACNGT 5 cut(s) 296, 520, 715, 1034, 1322
Bst6I CTCTTC 1 cut(s) 713
BstACI GRCGYC 1 cut(s) 1326
BstAPI GCANNNNNTGC 2 cut(s) 170, 1184
BstBAI YACGTR 1 cut(s) 1357
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 260, 1071, 1082
BstF5I GGATG 3 cut(s) 313, 464, 1162
BstMAI GTCTC 4 cut(s) 658, 1040, 1112, 1251
BstMWI GCNNNNNNNGC 2 cut(s) 170, 1184
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 1266
BstSNI TACGTA 1 cut(s) 1357
BstV1I GCAGC 3 cut(s) 986, 1171, 1201
BstV2I GAAGAC 2 cut(s) 789, 997
BstX2I RGATCY 3 cut(s) 183, 287, 919
BstXI CCANNNNNNTGG 3 cut(s) 443, 1152, 1172
BstYI RGATCY 3 cut(s) 183, 287, 919
BstZ17I GTATAC 1 cut(s) 767
BsuI GTATCC 1 cut(s) 857
BtgZI GCGATG 1 cut(s) 839
BtsCI GGATG 3 cut(s) 313, 464, 1162
BtsI GCAGTG 2 cut(s) 612, 963
BtsIMutI CAGTG 5 cut(s) 516, 612, 681, 963, 1327
Cac8I GCNNGC 1 cut(s) 171
CseI GACGC 1 cut(s) 1334
Csp6I GTAC 2 cut(s) 24, 885
CviAII CATG 5 cut(s) 160, 223, 440, 985, 1279
CviQI GTAC 2 cut(s) 24, 885
DdeI CTNAG 3 cut(s) 260, 1071, 1082
DriI GACNNNNNGTC 1 cut(s) 691
Eam1104I CTCTTC 1 cut(s) 713
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 1 cut(s) 713
Eco105I TACGTA 1 cut(s) 1357
Eco31I GGTCTC 2 cut(s) 1040, 1112
EcoRI GAATTC 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 739
FaeI CATG 5 cut(s) 163, 226, 443, 988, 1282
FatI CATG 5 cut(s) 159, 222, 439, 984, 1278
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 3 cut(s) 975, 1185, 1215
FokI GGATG 3 cut(s) 320, 471, 1169
Fsp4HI GCNGC 3 cut(s) 975, 1185, 1215
FspBI CTAG 1 cut(s) 11
GluI GCNGC 3 cut(s) 975, 1185, 1215
GsuI CTGGAG 1 cut(s) 1194
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 1334
Hin1I GRCGYC 1 cut(s) 1326
Hin1II CATG 5 cut(s) 163, 226, 443, 988, 1282
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 413, 890
Hpy166II GTNNAC 3 cut(s) 642, 767, 841
Hpy188I TCNGA 7 cut(s) 73, 149, 795, 863, 1072, 1078, 1083
Hpy188III TCNNGA 4 cut(s) 11, 208, 890, 1342
Hpy8I GTNNAC 3 cut(s) 642, 767, 841
Hpy99I CGWCG 3 cut(s) 178, 697, 1034
HpyAV CCTTC 3 cut(s) 324, 449, 798
HpyCH4III ACNGT 5 cut(s) 296, 520, 715, 1034, 1322
HpyCH4IV ACGT 2 cut(s) 843, 1356
HpyCH4V TGCA 8 cut(s) 58, 343, 737, 905, 956, 1194, 1278, 1307
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 1184
HpyF3I CTNAG 3 cut(s) 260, 1071, 1082
HpySE526I ACGT 2 cut(s) 843, 1356
Hsp92I GRCGYC 1 cut(s) 1326
Hsp92II CATG 5 cut(s) 163, 226, 443, 988, 1282
Ksp22I TGATCA 1 cut(s) 390
LmnI GCTCC 7 cut(s) 52, 101, 149, 532, 1057, 1130, 1175
Lsp1109I GCAGC 3 cut(s) 986, 1171, 1201
LweI GCATC 5 cut(s) 229, 648, 943, 1147, 1203
MaeI CTAG 1 cut(s) 11
MaeII ACGT 2 cut(s) 843, 1356
MaeIII GTNAC 4 cut(s) 269, 505, 679, 1322
MboII GAAGA 8 cut(s) 193, 491, 498, 700, 794, 825, 997, 1114
MflI RGATCY 3 cut(s) 183, 287, 919
MluCI AATT 4 cut(s) 92, 549, 621, 1166
MlyI GAGTC 1 cut(s) 1082
MnlI CCTC 7 cut(s) 77, 80, 197, 878, 1023, 1077, 1078
Mph1103I ATGCAT 1 cut(s) 739
MroXI GAANNNNTTC 2 cut(s) 553, 707
MseI TTAA 5 cut(s) 233, 633, 948, 1023, 1226
MslI CAYNNNNRTG 3 cut(s) 753, 989, 1277
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 170, 1184
NciI CCSGG 1 cut(s) 201
NlaIII CATG 5 cut(s) 163, 226, 443, 988, 1282
NlaIV GGNNCC 1 cut(s) 1053
NmeAIII GCCGAG 1 cut(s) 687
NmuCI GTSAC 2 cut(s) 679, 1322
NsiI ATGCAT 1 cut(s) 739
PdmI GAANNNNTTC 2 cut(s) 553, 707
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 3 cut(s) 976, 1186, 1216
PleI GAGTC 1 cut(s) 1081
PpsI GAGTC 1 cut(s) 1081
Ppu21I YACGTR 1 cut(s) 1357
PspN4I GGNNCC 1 cut(s) 1053
PsuI RGATCY 3 cut(s) 183, 287, 919
RsaI GTAC 2 cut(s) 25, 886
RsaNI GTAC 2 cut(s) 24, 885
RseI CAYNNNNRTG 3 cut(s) 753, 989, 1277
SaqAI TTAA 5 cut(s) 233, 633, 948, 1023, 1226
SatI GCNGC 3 cut(s) 975, 1185, 1215
SchI GAGTC 1 cut(s) 1082
ScrFI CCNGG 1 cut(s) 201
SfaNI GCATC 5 cut(s) 229, 648, 943, 1147, 1203
SfcI CTRYAG 1 cut(s) 1266
SmiMI CAYNNNNRTG 3 cut(s) 753, 989, 1277
SnaBI TACGTA 1 cut(s) 1357
Sse9I AATT 4 cut(s) 92, 549, 621, 1166
SsiI CCGC 4 cut(s) 119, 593, 1018, 1292
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 5 cut(s) 296, 520, 715, 1034, 1322
TaiI ACGT 2 cut(s) 846, 1359
TaqI TCGA 5 cut(s) 36, 245, 350, 811, 1029
TaqII GACCGA 1 cut(s) 179
TasI AATT 4 cut(s) 92, 549, 621, 1166
Tru1I TTAA 5 cut(s) 233, 633, 948, 1023, 1226
Tru9I TTAA 5 cut(s) 233, 633, 948, 1023, 1226
TscAI CASTG 5 cut(s) 523, 619, 688, 963, 1327
TseFI GTSAC 2 cut(s) 679, 1322
TseI GCWGC 3 cut(s) 974, 1184, 1214
Tsp45I GTSAC 2 cut(s) 679, 1322
TspDTI ATGAA 6 cut(s) 30, 194, 438, 749, 1129, 1192
TspGWI ACGGA 5 cut(s) 11, 39, 96, 114, 932
TspRI CASTG 5 cut(s) 523, 619, 688, 963, 1327
XapI RAATTY 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 766
XmnI GAANNNNTTC 2 cut(s) 553, 707
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.