Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006442

Physical Location & Seq

Genomic Coordinates Forward (+)

10859040 .. 10860128

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12420.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCCTCCCCGCCCAGCATTTAAGGGTTCTGCTCCCATCAATCTTTCTGATCGTTTGAACCAAGTTCTTCGATGGGCCTTGGGTTCCATTGAAATTCTGCTCAGCAGGCATTGTCCCATATGGTATGGCTACAATGGGAAGTTGAAGCTTTTGGAGAGACTTGCATACATCAATACCATCGTTTACCCTCTCACATCCATACCACTGATTGCCTACTGTTTGCTTCCTGCCTTTTGCCTGCTCACAGAAAAGTTTATCATTCCTGAGGTAACACCTAACTTCGCTAGCATGTGGTTCATTCTGCTCTTTGTTTCCATTATTGCAACCGGTATTCTTGAGCTAAGGTGGAGTGGAGTCAGTATTGATGACTGGTGGAGAAACGAACAGTTCTGGATCATTGGTGGAACATCAGCTCATCTATTCGCTGTCTTCCAAGGTCTCCTGAAAGTTCTTGCTGGGATTGATACCAACTTCACTGTCACGTCAAAGTCATCTGATGAGGATGGGGATTTTGCCGAGCTCTACGTGTTCAAATGGACATCACTTCTCATCCCTCCAACCACGGTTCTTCTTGTGAACATAGTAGGTATTGTGGCCGGTGTTTCATATGCTATAAATAGCGGTTACCAATCTTGGGGTCCACTTTTTGGCAAACTGTTTTTCGCCTTATGGGTGGTAGCACATCTGTATCCATTCTTGAAGGGTCTGTTGGGTCGGCAAAATCGTACCCCGACAATCGTCATCGTGTGGTCTATCCTTCTTGCTTCAATATTTTCCTTGCTATGGGTGCGCATCGACCCCTTCACTTCAGACAAAACAAACGCTGCAACAAACGGTCAATGTGGCATCAACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

286

Amino Acids

31.9

Weight (kDa)

8.57

Isoelectric Point (pI)

23.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32410
fragaria_vesca	FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420
malus_domestica	MD08G1147200.v1.1 MD15G1123200.v1.1
prunus_persica	Prupe.1G478600_v2.0.a1 Prupe.1G478600_v2.0.a1
pyrus_communis	pycom08g12420 pycom15g11100
rosa_chinensis	RchiOBHm_Chr6g0298221
rosa_laevigata	RLG00000011525
rosa_multiflora	Rmu_sc0017507.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169850
rosa_rugosa	Rorug06G0279600 Rorug06G0279600
rosa_samantha	Rh6AG389900 Rh6BG398300 Rh6CG404200 Rh6DG390900
rosa_wichuraiana	Rw6G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	791
AccB7I	CCANNNNNTGG	1 cut(s)	647
AciI	CCGC	2 cut(s)	10, 621
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	3 cut(s)	634, 647, 783
AflIII	ACRYGT	1 cut(s)	525
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	6 cut(s)	58, 92, 145, 532, 700, 768
AjiI	CACGTC	1 cut(s)	483
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
AluBI	AGCT	4 cut(s)	148, 340, 413, 520
AluI	AGCT	4 cut(s)	148, 340, 413, 520
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	151, 443
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	2 cut(s)	75, 594
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	1 cut(s)	93
AsiGI	ACCGGT	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	2 cut(s)	75, 638
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	638
AxyI	CCTNAGG	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	671, 704
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	811
BccI	CCATC	4 cut(s)	44, 66, 185, 497
BciVI	GTATCC	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	151, 443
BfaI	CTAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	699
BisI	GCNGC	1 cut(s)	825
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	826
Bme18I	GGWCC	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	75, 638
BmiI	GGNNCC	2 cut(s)	85, 639
BmsI	GCATC	1 cut(s)	801
BmtI	GCTAGC	1 cut(s)	288
BoxI	GACNNNNGTC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	78, 433, 561
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	3 cut(s)	634, 647, 783
Bse118I	RCCGGY	2 cut(s)	326, 596
Bse1I	ACTGG	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	78, 433, 561
BseGI	GGATG	3 cut(s)	194, 508, 549
BseLI	CCNNNNNNNGG	3 cut(s)	634, 647, 783
BseMII	CTCAG	2 cut(s)	115, 255
BseNI	ACTGG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	811
BseYI	CCCAGC	2 cut(s)	13, 455
BshFI	GGCC	2 cut(s)	77, 596
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	327, 597
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	634, 647, 783
BsmAI	GTCTC	2 cut(s)	151, 443
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	77, 596
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	49, 393
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	2 cut(s)	10, 621
BspANI	GGCC	2 cut(s)	77, 596
BspCNI	CTCAG	2 cut(s)	114, 256
BspLI	GGNNCC	2 cut(s)	85, 639
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	443
BsrFI	RCCGGY	2 cut(s)	326, 596
BsrI	ACTGG	1 cut(s)	374
BssAI	RCCGGY	2 cut(s)	326, 596
BssECI	CCNNGG	3 cut(s)	78, 433, 561
BssMI	GATC	2 cut(s)	49, 393
BssT1I	CCWWGG	2 cut(s)	78, 433
Bst4CI	ACNGT	7 cut(s)	218, 387, 478, 565, 657, 836, 854
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	107, 239, 286
BstDEI	CTNAG	3 cut(s)	101, 264, 341
BstDSI	CCRYGG	1 cut(s)	561
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	194, 508, 549
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	2 cut(s)	52, 396
BstMAI	GTCTC	2 cut(s)	151, 443
BstMBI	GATC	2 cut(s)	49, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 787
BstNSI	RCATGY	1 cut(s)	292
BstPAI	GACNNNNGTC	1 cut(s)	737
BstPI	GGTNACC	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	811
BstV2I	GAAGAC	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	77, 596
BtgI	CCRYGG	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	194, 508, 549
BtsIMutI	CAGTG	2 cut(s)	203, 474
Cac8I	GCNNGC	3 cut(s)	107, 239, 286
CfoI	GCGC	1 cut(s)	792
Cfr10I	RCCGGY	2 cut(s)	326, 596
Cfr13I	GGNCC	2 cut(s)	75, 638
Csp6I	GTAC	1 cut(s)	726
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	7 cut(s)	77, 129, 148, 340, 413, 520, 596
CviKI_1	RGCY	7 cut(s)	77, 129, 148, 340, 413, 520, 596
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	3 cut(s)	101, 264, 341
DpnI	GATC	2 cut(s)	51, 395
DpnII	GATC	2 cut(s)	49, 393
EaeI	YGGCCR	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	78, 433
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	623
EcoT14I	CCWWGG	2 cut(s)	78, 433
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	78, 433
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	288
FauI	CCCGC	1 cut(s)	17
FauNDI	CATATG	2 cut(s)	119, 607
Fnu4HI	GCNGC	1 cut(s)	825
FokI	GGATG	3 cut(s)	181, 515, 536
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	1 cut(s)	825
FspAI	RTGCGCAY	1 cut(s)	791
FspBI	CTAG	1 cut(s)	285
FspI	TGCGCA	1 cut(s)	791
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	1 cut(s)	825
GsaI	CCCAGC	2 cut(s)	17, 459
HaeIII	GGCC	2 cut(s)	77, 596
HapII	CCGG	2 cut(s)	327, 597
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	2 cut(s)	327, 597
Hpy166II	GTNNAC	3 cut(s)	184, 577, 641
Hpy188I	TCNGA	3 cut(s)	49, 496, 811
Hpy188III	TCNNGA	5 cut(s)	263, 335, 391, 442, 697
Hpy8I	GTNNAC	3 cut(s)	184, 577, 641
HpyAV	CCTTC	3 cut(s)	694, 767, 811
HpyCH4III	ACNGT	7 cut(s)	218, 387, 478, 565, 657, 836, 854
HpyCH4IV	ACGT	2 cut(s)	482, 525
HpyCH4V	TGCA	3 cut(s)	164, 323, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 787
HpyF3I	CTNAG	3 cut(s)	101, 264, 341
HpySE526I	ACGT	2 cut(s)	482, 525
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	49, 393
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	811
LweI	GCATC	1 cut(s)	801
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	482, 525
MaeIII	GTNAC	3 cut(s)	268, 478, 623
MalI	GATC	2 cut(s)	51, 395
MboI	GATC	2 cut(s)	49, 393
MboII	GAAGA	3 cut(s)	59, 421, 560
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	581
MnlI	CCTC	5 cut(s)	15, 198, 259, 493, 564
MseI	TTAA	1 cut(s)	21
MspI	CCGG	2 cut(s)	327, 597
MwoI	GCNNNNNNNGC	2 cut(s)	106, 787
NdeI	CATATG	2 cut(s)	119, 607
NdeII	GATC	2 cut(s)	49, 393
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	85, 639
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	478
NsbI	TGCGCA	1 cut(s)	791
NspI	RCATGY	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	721
PflMI	CCANNNNNTGG	1 cut(s)	647
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	826
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	526
PshAI	GACNNNNGTC	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	522
PspEI	GGTNACC	1 cut(s)	623
PspFI	CCCAGC	2 cut(s)	13, 455
PspN4I	GGNNCC	2 cut(s)	85, 639
PspPI	GGNCC	2 cut(s)	75, 638
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	825
Sau3AI	GATC	2 cut(s)	49, 393
Sau96I	GGNCC	2 cut(s)	75, 638
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	801
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	10, 621
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	78, 433
TaaI	ACNGT	7 cut(s)	218, 387, 478, 565, 657, 836, 854
TaiI	ACGT	2 cut(s)	485, 528
TaqI	TCGA	2 cut(s)	70, 795
TasI	AATT	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	2 cut(s)	210, 481
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	824
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	286, 594
TspRI	CASTG	2 cut(s)	210, 481
Van91I	CCANNNNNTGG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.