Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006442

Physical Location & Seq

Genomic Coordinates Reverse (-)

62588607 .. 62594737

Gene Structure 6131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3228 bp

ATGGAAGCCAATGCCGGAATGGTGGCCGGCTCTTACAAGAGGAACGAGCTCGTTCGGATCCGTCACGATTCCGATAGCTCAGCGAAGCCCTTGAAGAATCTGAACGGCCAGATATGTCAGATCTGTGGTGACACTGTCGGACTTACAGCTACTGGCGATGTCTTTGTTGCCTGTAATGAGTGTGCCTTCCCAGTTTGTCGGCCTTGTTATGAGTACGAGCGGAAAGATGGGAACCAGGCTTGTCCGCAATGCAAGACTAGATATAAAAGGCACAAAGGGAGTCCTCGCGTGGACGGAGATGAGGATGAGGATGATATTGATGATCTTGAGAATGAGTTCAATTATGCACAAGGAACTAGCAATGCAAGACGCCAATGGCAAGGAGATGATCCTGACCTCTCATCTTCCTCTAGACATGAATCTGGACAGCCAATTCCCCTTCTCACAAATGGACAATCGTCTCTTCAGGTGTCTGGTGAGATACCCTGTGCTACTCCTGACAACCAATCTGTGCGAACTACATCAGGTCCTTTGGATCCACGGCAGCCAGTTCCCGTGAGAATAGTTGATCCTTCAAAGGACTTGAATTCCTATGGGCTAGGAAATGTTGACTGGAAAGAAAGGGTCGAAGGATGGAAACTCAAACAGGACAAAAATATGATGCAGATGACCAGTAGATACCCTGAAGGAAAGGGGGACATGGAAGGCACTGGTTCAAACGGAGAAGAACTCCAAATGGCTGATGATGCTCGACAACCTTTGAGTCGTATTGTTCCTATCTCTTCATCTCATCTGACACCTTATCGTGTTGTGATCATACTTCGGCTTATCATTCTGGGTTTCTTTTTGCAATACCGTGCAACTCACCCAGTGAAAGATGCATATCCATTATGGCTAATATCAGTTATCTGTGAGATTTGGTTTGCTTTTTCATGGCTTCTGGATCAGTTTCCAAAATGGTTTCCCATAAATCGTGAGACCTATCTTGACAGGCTCGCACTGAGGTATGATCGTGATGGGGAACCATCTCAGTTAGCTCCAGTAGATGTGTTTGTGAGTACAGTGGATCCCATGAAAGAACCTCCTCTGGTTACAGCCAACACAGTTTTGTCCATACTTTCTGTGGATTACCCTGTGGACAAAATCTCTTGCTATGTGTCAGATGATGGATCTGCAATGCTGACATTTGAATCCCTTTCTGAAACTGCGGAGTTTGCTAGAAAGTGGGTGCCTTTCTGCAAGAAACACAACATTGAACCTAGAGCTCCTGAGTTTTATTTTGCTCAAAAGATTGATTACTTAAAAGACAAGATACAGCCTTCTTTTGTAAAGGAGCGCAGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATAAGGATTAATGCCTTAGTTGCCAAGGCACAGAAGATGCCTGACGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATTCTAGGGATCATCCAGGAATGATCCAGGTCTTCTTAGGCCACAGTGGCGGCCTTGATACAGATGGCAATGAGCTGCCTCGACTTGTTTATGTTTCTCGTGAGAAGAGACCTGGCTTCCAGCATCACAAAAAAGCTGGAGCAATGAATGCATTGATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGCTTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAACGTTTCGATGGGATTGACATGCACGATCGATATGCCAATCGTAACATTGTCTTCTTTGATATCAACTTGAAAGGGTTGGATGGCATCCAGGGTCCAGTCTATGTGGGAACTGGTTGCTGTTTCAACAGGCAAGCGCTATATGGGTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCAAACATCATATTCAAGAGTTGTTGTGGTTCAAGAAAGAAGGGAAAGACCAGCAATAAGAAGTATATTGACAAGAAGAGGGCTGTCAAAAGAACTGAATCTACCATTCCCATTTTCAATATGGAAGACATTGAGGAGGGTGTTGAAGGTTATGATGATGAGAGGTCCCTTCTTATGTCTCAAAAGAGCTTAGAGAAGCGTTTTGGTCAATCTCCAGTTTTTATTGCAGCCACGTTCATGGAACAAGGGGGCATTCCACCTACAACAAACCCTGCAACTCTTTTGAAGGAAGCCATACATGTTATAAGCTGTGGGTATGAAGACAAGACCGAATGGGGAAAAGAGATCGGATGGATCTATGGTTCTGTGACTGAAGATATTTTAACCGGGTTTAAGATGCATGCTCGTGGTTGGATATCAGTCTATTGCATGCCTCCCCGTCCAGCATTTAAGGGGTCTGCTCCCATCAATCTTTCTGATCGTTTGAACCAGGTGCTTCGGTGGGCCTTGGGATCCATTGAAATCTTGCTCAGCAGGCATTGTCCCATATGGTATGGCTACAATGGGAGAATGAAGCTTCTGGAAAGAATTGCATACATCAATACCATTGTTTATCCCCTCACATCTATACCACTGATTGCATACTGTATGCTTCCTGCGTTTTGCCTTCTCACAAATAAGTTCATCATTCCTGAGATAAGCAACTTCGCTAGCATGTGGTTTATTCTTCTCTTTGTTTCGATTGCCGCAACTGGAGTTCTTGAGCTTAGGTGGAGTGGAGTCGGCATTGATGACTGGTGGAGAAACGAACAGTTCTGGGTCATCGGTGGAACATCTGCTCATCTTTTCGCTGTCTTCCAAGGTCTCCTAAAAGTTCTTGCTGGGATTGACACCAACTTCACTGTCACATCAAAGGCCTCTGATGAGGATGGGGATTTTGCAGAGCTTTATGTGTTCAAGTGGACAGCACTTCTCATTCCTCCCACCACAGTTCTCATTGTGAACTTGGTAGGTATCGTGGCCGGTGTTTCATATGCCATAAACAGTGGGTACCAATCTTGGGGGCCACTTTTTGGCAAACTGTTTTTCGCCATGTGGGTCGTTGCCCATCTATACCCATTCTTGAAGGGTCTGTTGGGTCGCCAAAATCGTACCCCTACGATCGTCATTGTATGGTCTATCCTCCTTGCTTCGATATTTTCCTTGCTATGGGTGCGCATCGACCCATTCACATCAGACGCTTCAAAAGCTGCATCAAAAGGTCAATGTGGCGTCAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1075

Amino Acids

121.08

Weight (kDa)

6.34

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	29 - 105	4.1e-45	Zinc-binding RING-finger
Cellulose_synt	PF03552	348 - 1066	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	763 - 870	6.5e-08	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32410
fragaria_vesca	FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420
malus_domestica	MD08G1147200.v1.1 MD15G1123200.v1.1
prunus_persica	Prupe.1G478600_v2.0.a1 Prupe.1G478600_v2.0.a1
pyrus_communis	pycom08g12420 pycom15g11100
rosa_chinensis	RchiOBHm_Chr6g0298221
rosa_laevigata	RLG00000011525
rosa_multiflora	Rmu_sc0017507.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169850
rosa_rugosa	Rorug06G0279600 Rorug06G0279600
rosa_samantha	Rh6AG389900 Rh6BG398300 Rh6CG404200 Rh6DG390900
rosa_wichuraiana	Rw6G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2249
Acc16I	TGCGCA	1 cut(s)	3161
Acc36I	ACCTGC	1 cut(s)	1754
Acc65I	GGTACC	1 cut(s)	2994
AccB1I	GGYRCC	2 cut(s)	1228, 2994
AccB7I	CCANNNNNTGG	3 cut(s)	1451, 1733, 3017
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	220, 245, 1208, 1509, 2691
AclI	AACGTT	1 cut(s)	1768
AcoI	YGGCCR	3 cut(s)	24, 106, 2964
AcsI	RAATTY	2 cut(s)	586, 1364
AcuI	CTGAAG	3 cut(s)	449, 705, 2337
AcyI	GRCGYC	2 cut(s)	370, 3216
AdeI	CACNNNGTG	1 cut(s)	871
AfaI	GTAC	5 cut(s)	215, 1060, 1755, 2996, 3097
AfeI	AGCGCT	1 cut(s)	1902
AfiI	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
AflIII	ACRYGT	1 cut(s)	2242
AjnI	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
AjuI	GAANNNNNNNTTGG	2 cut(s)	3062, 3094
AloI	GAACNNNNNNTCC	2 cut(s)	2290, 2322
Alw21I	GWGCWC	2 cut(s)	51, 1267
Alw26I	GTCTC	5 cut(s)	465, 971, 1561, 2127, 2813
AlwNI	CAGNNNCTG	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	1902
ApeKI	GCWGC	4 cut(s)	544, 1534, 2171, 3194
ApoI	RAATTY	2 cut(s)	586, 1364
AseI	ATTAAT	1 cut(s)	1380
Asp700I	GAANNNNTTC	1 cut(s)	335
Asp718I	GGTACC	1 cut(s)	2994
AspLEI	GCGC	3 cut(s)	1338, 1903, 3162
AspS9I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
AsuC2I	CCSGG	1 cut(s)	2332
AsuHPI	GGTGA	3 cut(s)	140, 488, 857
AsuNHI	GCTAGC	1 cut(s)	2654
AvaII	GGWCC	4 cut(s)	527, 1723, 1859, 2109
BamHI	GGATCC	4 cut(s)	57, 535, 1066, 2456
BanI	GGYRCC	2 cut(s)	1228, 2994
BanII	GRGCYC	2 cut(s)	51, 1267
BauI	CACGAG	2 cut(s)	1557, 2349
BbsI	GAAGAC	6 cut(s)	1483, 1748, 1810, 2076, 2271, 2791
Bbv12I	GWGCWC	2 cut(s)	51, 1267
BbvI	GCAGC	4 cut(s)	556, 1521, 2183, 3181
BceAI	ACGGC	2 cut(s)	121, 557
BcgI	CGANNNNNNTGC	2 cut(s)	1781, 1815
BciT130I	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
BclI	TGATCA	2 cut(s)	813, 1669
BcnI	CCSGG	1 cut(s)	2332
BcoDI	GTCTC	5 cut(s)	465, 971, 1561, 2127, 2813
BfaI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
BfoI	RGCGCY	1 cut(s)	1904
BfuAI	ACCTGC	1 cut(s)	1754
BglI	GCCNNNNNGGC	1 cut(s)	1506
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
BlpI	GCTNAGC	2 cut(s)	79, 2474
BlsI	GCNGC	6 cut(s)	546, 1511, 1536, 2173, 2692, 3196
Bme1390I	CCNGG	8 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435
Bme18I	GGWCC	4 cut(s)	527, 1723, 1859, 2109
BmgT120I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
BmrFI	CCNGG	8 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435
BmrI	ACTGGG	2 cut(s)	185, 863
BmsI	GCATC	9 cut(s)	651, 736, 868, 1398, 1591, 1860, 2331, 3171, 3206
BmtI	GCTAGC	1 cut(s)	2658
BmuI	ACTGGG	2 cut(s)	185, 863
BoxI	GACNNNNGTC	1 cut(s)	457
BpiI	GAAGAC	6 cut(s)	1483, 1748, 1810, 2076, 2271, 2791
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	4 cut(s)	1023, 1617, 2142, 2718
Bpu10I	CCTNAGC	1 cut(s)	2711
Bpu1102I	GCTNAGC	2 cut(s)	79, 2474
BpuEI	CTTGAG	2 cut(s)	347, 2726
BpuMI	CCSGG	1 cut(s)	2332
Bsa29I	ATCGAT	1 cut(s)	1795
BsaBI	GATNNNNATC	2 cut(s)	882, 1668
BsaHI	GRCGYC	2 cut(s)	370, 3216
BsaI	GGTCTC	3 cut(s)	971, 1561, 2813
BsaJI	CCNNGG	7 cut(s)	539, 1395, 1445, 1451, 1855, 2451, 2803
Bsc4I	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
Bse118I	RCCGGY	2 cut(s)	26, 2966
Bse3DI	GCAATG	7 cut(s)	254, 367, 1182, 1350, 1534, 1608, 1713
Bse8I	GATNNNNATC	2 cut(s)	882, 1668
BseBI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
BseCI	ATCGAT	1 cut(s)	1795
BseDI	CCNNGG	7 cut(s)	539, 1395, 1445, 1451, 1855, 2451, 2803
BseGI	GGATG	9 cut(s)	310, 316, 638, 1441, 1471, 1851, 1852, 2300, 2878
BseJI	GATNNNNATC	2 cut(s)	882, 1668
BseLI	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
BseMI	GCAATG	7 cut(s)	254, 367, 1182, 1350, 1534, 1608, 1713
BseMII	CTCAG	7 cut(s)	93, 992, 1043, 1260, 1920, 2488, 2628
BseRI	GAGGAG	2 cut(s)	1074, 2093
BseXI	GCAGC	4 cut(s)	556, 1521, 2183, 3181
BseYI	CCCAGC	2 cut(s)	1726, 2825
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	2 cut(s)	1795, 3108
BshNI	GGYRCC	2 cut(s)	1228, 2994
BshVI	ATCGAT	1 cut(s)	1795
BsiEI	CGRYCG	2 cut(s)	1795, 3108
BsiHKAI	GWGCWC	2 cut(s)	51, 1267
BsiSI	CCGG	4 cut(s)	15, 27, 2331, 2967
BslFI	GGGAC	4 cut(s)	710, 1453, 2095, 2472
BslI	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
BsmAI	GTCTC	5 cut(s)	465, 971, 1561, 2127, 2813
BsmBI	CGTCTC	1 cut(s)	465
BsmFI	GGGAC	4 cut(s)	710, 1453, 2095, 2472
BsmI	GAATGC	2 cut(s)	1612, 2196
Bso31I	GGTCTC	3 cut(s)	971, 1561, 2813
Bsp1286I	GDGCHC	2 cut(s)	51, 1267
Bsp1407I	TGTACA	1 cut(s)	1753
Bsp1720I	GCTNAGC	2 cut(s)	79, 2474
Bsp19I	CCATGG	1 cut(s)	1445
BspACI	CCGC	5 cut(s)	220, 245, 1208, 1509, 2691
BspCNI	CTCAG	7 cut(s)	92, 993, 1042, 1261, 1921, 2487, 2629
BspDI	ATCGAT	1 cut(s)	1795
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	1716
BspMI	ACCTGC	1 cut(s)	1754
BspOI	GCTAGC	1 cut(s)	2658
BspT107I	GGYRCC	2 cut(s)	1228, 2994
BspTNI	GGTCTC	3 cut(s)	971, 1561, 2813
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	7 cut(s)	254, 367, 1182, 1350, 1534, 1608, 1713
BsrFI	RCCGGY	2 cut(s)	26, 2966
BsrGI	TGTACA	1 cut(s)	1753
BssAI	RCCGGY	2 cut(s)	26, 2966
BssECI	CCNNGG	7 cut(s)	539, 1395, 1445, 1451, 1855, 2451, 2803
BssNI	GRCGYC	2 cut(s)	370, 3216
BssSI	CACGAG	2 cut(s)	1557, 2349
BssT1I	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
Bst2BI	CACGAG	2 cut(s)	1557, 2349
Bst2UI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
Bst6I	CTCTTC	5 cut(s)	468, 787, 1343, 1559, 2015
BstACI	GRCGYC	2 cut(s)	370, 3216
BstAPI	GCANNNNNTGC	1 cut(s)	1607
BstAUI	TGTACA	1 cut(s)	1753
BstC8I	GCNNGC	7 cut(s)	28, 996, 1899, 2346, 2375, 2480, 2656
BstDSI	CCRYGG	2 cut(s)	539, 1445
BstENI	CCTNNNNNAGG	1 cut(s)	1416
BstF5I	GGATG	9 cut(s)	310, 316, 638, 1441, 1471, 1851, 1852, 2300, 2878
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	1904
BstHHI	GCGC	3 cut(s)	1338, 1903, 3162
BstMAI	GTCTC	5 cut(s)	465, 971, 1561, 2127, 2813
BstMCI	CGRYCG	2 cut(s)	1795, 3108
BstMWI	GCNNNNNNNGC	8 cut(s)	746, 1214, 1391, 1506, 1607, 2479, 3157, 3191
BstNI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
BstNSI	RCATGY	5 cut(s)	1789, 2246, 2348, 2377, 2662
BstPAI	GACNNNNGTC	1 cut(s)	457
BstSCI	CCNGG	8 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2330, 2433
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	556, 1521, 2183, 3181
BstV2I	GAAGAC	6 cut(s)	1483, 1748, 1810, 2076, 2271, 2791
BstX2I	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
BstXI	CCANNNNNNTGG	1 cut(s)	2182
BstYI	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
Bsu15I	ATCGAT	1 cut(s)	1795
BsuTUI	ATCGAT	1 cut(s)	1795
BtgI	CCRYGG	2 cut(s)	539, 1445
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	9 cut(s)	310, 316, 638, 1441, 1471, 1851, 1852, 2300, 2878
BtsIMutI	CAGTG	9 cut(s)	132, 708, 876, 998, 1068, 1510, 2576, 2844, 2995
BveI	ACCTGC	1 cut(s)	1754
Cac8I	GCNNGC	7 cut(s)	28, 996, 1899, 2346, 2375, 2480, 2656
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	1716
CfoI	GCGC	3 cut(s)	1338, 1903, 3162
Cfr10I	RCCGGY	2 cut(s)	26, 2966
Cfr13I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
ClaI	ATCGAT	1 cut(s)	1795
CseI	GACGC	3 cut(s)	378, 3191, 3205
CsiI	ACCWGGT	1 cut(s)	2433
Csp6I	GTAC	5 cut(s)	214, 1059, 1754, 2995, 3096
CviQI	GTAC	5 cut(s)	214, 1059, 1754, 2995, 3096
DraIII	CACNNNGTG	1 cut(s)	871
EaeI	YGGCCR	3 cut(s)	24, 106, 2964
Eam1104I	CTCTTC	5 cut(s)	468, 787, 1343, 1559, 2015
EarI	CTCTTC	5 cut(s)	468, 787, 1343, 1559, 2015
Ecl136II	GAGCTC	2 cut(s)	49, 1265
Eco130I	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
Eco147I	AGGCCT	1 cut(s)	2861
Eco24I	GRGCYC	2 cut(s)	51, 1267
Eco31I	GGTCTC	3 cut(s)	971, 1561, 2813
Eco32I	GATATC	2 cut(s)	1828, 2361
Eco47I	GGWCC	4 cut(s)	527, 1723, 1859, 2109
Eco47III	AGCGCT	1 cut(s)	1902
Eco53kI	GAGCTC	2 cut(s)	49, 1265
Eco57I	CTGAAG	3 cut(s)	449, 705, 2337
EcoICRI	GAGCTC	2 cut(s)	49, 1265
EcoNI	CCTNNNNNAGG	1 cut(s)	1416
EcoO109I	RGGNCCY	2 cut(s)	527, 2109
EcoRI	GAATTC	2 cut(s)	586, 1364
EcoRII	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
EcoRV	GATATC	2 cut(s)	1828, 2361
EcoT14I	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
EcoT22I	ATGCAT	3 cut(s)	883, 1612, 2346
EcoT38I	GRGCYC	2 cut(s)	51, 1267
ErhI	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
Esp3I	CGTCTC	1 cut(s)	465
FaqI	GGGAC	4 cut(s)	710, 1453, 2095, 2472
FauNDI	CATATG	2 cut(s)	2492, 2977
FbaI	TGATCA	2 cut(s)	813, 1669
Fnu4HI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
FokI	GGATG	9 cut(s)	317, 323, 645, 1448, 1458, 1838, 1859, 2307, 2885
FriOI	GRGCYC	2 cut(s)	51, 1267
Fsp4HI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
FspAI	RTGCGCAY	1 cut(s)	3161
FspBI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
FspI	TGCGCA	1 cut(s)	3161
GlaI	GCGC	3 cut(s)	1337, 1902, 3161
GluI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
GsaI	CCCAGC	2 cut(s)	1730, 2829
GsuI	CTGGAG	4 cut(s)	1023, 1617, 2142, 2718
HaeII	RGCGCY	1 cut(s)	1904
HapII	CCGG	4 cut(s)	15, 27, 2331, 2967
HgaI	GACGC	3 cut(s)	378, 3191, 3205
HhaI	GCGC	3 cut(s)	1338, 1903, 3162
Hin1I	GRCGYC	2 cut(s)	370, 3216
Hin6I	GCGC	3 cut(s)	1336, 1901, 3160
HinP1I	GCGC	3 cut(s)	1336, 1901, 3160
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	2519
HpaII	CCGG	4 cut(s)	15, 27, 2331, 2967
HphI	GGTGA	3 cut(s)	140, 488, 857
Hpy166II	GTNNAC	5 cut(s)	292, 610, 1138, 2907, 2947
Hpy8I	GTNNAC	5 cut(s)	292, 610, 1138, 2907, 2947
Hpy99I	CGWCG	1 cut(s)	1664
HpyCH4IV	ACGT	3 cut(s)	1659, 1768, 2177
HpyF10VI	GCNNNNNNNGC	8 cut(s)	746, 1214, 1391, 1506, 1607, 2479, 3157, 3191
HpySE526I	ACGT	3 cut(s)	1659, 1768, 2177
Hsp92I	GRCGYC	2 cut(s)	370, 3216
HspAI	GCGC	3 cut(s)	1336, 1901, 3160
KpnI	GGTACC	1 cut(s)	2998
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	2 cut(s)	813, 1669
LmnI	GCTCC	5 cut(s)	1042, 1270, 1333, 1598, 2410
Lsp1109I	GCAGC	4 cut(s)	556, 1521, 2183, 3181
LweI	GCATC	9 cut(s)	651, 736, 868, 1398, 1591, 1860, 2331, 3171, 3206
MabI	ACCWGGT	1 cut(s)	2433
MaeI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
MaeII	ACGT	3 cut(s)	1659, 1768, 2177
MaeIII	GTNAC	6 cut(s)	62, 128, 1090, 1808, 2311, 2848
MbiI	CCGCTC	1 cut(s)	220
MfeI	CAATTG	1 cut(s)	3220
MflI	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
MhlI	GDGCHC	2 cut(s)	51, 1267
MluCI	AATT	7 cut(s)	340, 432, 586, 1364, 1459, 2532, 3220
MlyI	GAGTC	4 cut(s)	289, 772, 1435, 2733
MmeI	TCCRAC	4 cut(s)	118, 1403, 1824, 2336
Mph1103I	ATGCAT	3 cut(s)	883, 1612, 2346
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
MslI	CAYNNNNRTG	2 cut(s)	2180, 2349
MspA1I	CMGCKG	1 cut(s)	1628
MspI	CCGG	4 cut(s)	15, 27, 2331, 2967
MspR9I	CCNGG	8 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435
MunI	CAATTG	1 cut(s)	3220
Mva1269I	GAATGC	2 cut(s)	1612, 2196
MvaI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	8 cut(s)	746, 1214, 1391, 1506, 1607, 2479, 3157, 3191
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	2332
NcoI	CCATGG	1 cut(s)	1445
NdeI	CATATG	2 cut(s)	2492, 2977
NgoMIV	GCCGGC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	2654
NmuCI	GTSAC	4 cut(s)	62, 128, 2311, 2848
NsbI	TGCGCA	1 cut(s)	3161
NsiI	ATGCAT	3 cut(s)	883, 1612, 2346
NspI	RCATGY	5 cut(s)	1789, 2246, 2348, 2377, 2662
PaeI	GCATGC	2 cut(s)	2348, 2377
PagI	TCATGA	1 cut(s)	1716
PceI	AGGCCT	1 cut(s)	2861
PciI	ACATGT	1 cut(s)	2242
PcsI	WCGNNNNNNNCGW	1 cut(s)	3091
PctI	GAATGC	2 cut(s)	1612, 2196
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	6 cut(s)	68, 97, 419, 1190, 1615, 2042
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	3 cut(s)	1451, 1733, 3017
PfoI	TCCNGGA	1 cut(s)	1474
PkrI	GCNGC	6 cut(s)	546, 1511, 1536, 2173, 2692, 3196
Ple19I	CGATCG	2 cut(s)	1795, 3108
PleI	GAGTC	4 cut(s)	288, 771, 1435, 2732
PpsI	GAGTC	4 cut(s)	288, 771, 1435, 2732
PpuMI	RGGWCCY	2 cut(s)	527, 2109
PscI	ACATGT	1 cut(s)	2242
PshAI	GACNNNNGTC	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	1380
PsiI	TTATAA	1 cut(s)	2249
Psp124BI	GAGCTC	2 cut(s)	51, 1267
Psp1406I	AACGTT	1 cut(s)	1768
Psp5II	RGGWCCY	2 cut(s)	527, 2109
Psp6I	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
PspFI	CCCAGC	2 cut(s)	1726, 2825
PspGI	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
PspPI	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
PspPPI	RGGWCCY	2 cut(s)	527, 2109
PsrI	GAACNNNNNNTAC	2 cut(s)	2029, 2061
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	2 cut(s)	1795, 3108
PvuII	CAGCTG	1 cut(s)	1628
RsaI	GTAC	5 cut(s)	215, 1060, 1755, 2996, 3097
RsaNI	GTAC	5 cut(s)	214, 1059, 1754, 2995, 3096
RseI	CAYNNNNRTG	2 cut(s)	2180, 2349
SacI	GAGCTC	2 cut(s)	51, 1267
SaqAI	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
SatI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
Sau96I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
SchI	GAGTC	4 cut(s)	289, 772, 1435, 2733
ScrFI	CCNGG	8 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435
SduI	GDGCHC	2 cut(s)	51, 1267
SexAI	ACCWGGT	1 cut(s)	2433
SfaNI	GCATC	9 cut(s)	651, 736, 868, 1398, 1591, 1860, 2331, 3171, 3206
SinI	GGWCC	4 cut(s)	527, 1723, 1859, 2109
SmiMI	CAYNNNNRTG	2 cut(s)	2180, 2349
SmlI	CTYRAG	2 cut(s)	326, 2705
SmoI	CTYRAG	2 cut(s)	326, 2705
SphI	GCATGC	2 cut(s)	2348, 2377
Sse9I	AATT	7 cut(s)	340, 432, 586, 1364, 1459, 2532, 3220
SseBI	AGGCCT	1 cut(s)	2861
SsiI	CCGC	5 cut(s)	220, 245, 1208, 1509, 2691
SspMI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
SstI	GAGCTC	2 cut(s)	51, 1267
StuI	AGGCCT	1 cut(s)	2861
StyD4I	CCNGG	8 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2330, 2433
StyI	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
TaiI	ACGT	3 cut(s)	1662, 1771, 2180
TaqII	GACCGA	1 cut(s)	2288
TasI	AATT	7 cut(s)	340, 432, 586, 1364, 1459, 2532, 3220
TatI	WGTACW	2 cut(s)	1058, 1753
TauI	GCSGC	2 cut(s)	1512, 2693
TfiI	GAWTC	6 cut(s)	68, 97, 419, 1190, 1615, 2042
Tru1I	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
Tru9I	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
TscAI	CASTG	9 cut(s)	139, 715, 876, 1005, 1068, 1510, 2583, 2851, 2995
TseFI	GTSAC	4 cut(s)	62, 128, 2311, 2848
TseI	GCWGC	4 cut(s)	544, 1534, 2171, 3194
Tsp45I	GTSAC	4 cut(s)	62, 128, 2311, 2848
TspGWI	ACGGA	3 cut(s)	50, 309, 735
TspRI	CASTG	9 cut(s)	139, 715, 876, 1005, 1068, 1510, 2583, 2851, 2995
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	3 cut(s)	1451, 1733, 3017
VpaK11BI	GGWCC	4 cut(s)	527, 1723, 1859, 2109
VspI	ATTAAT	1 cut(s)	1380
XagI	CCTNNNNNAGG	1 cut(s)	1416
XapI	RAATTY	2 cut(s)	586, 1364
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	5 cut(s)	1789, 2246, 2348, 2377, 2662
XcmI	CCANNNNNNNNNTGG	3 cut(s)	16, 1120, 2062
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
Zsp2I	ATGCAT	3 cut(s)	883, 1612, 2346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.