Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017507.1

Orthogroup ID

OG0006442

Physical Location & Seq

Genomic Coordinates Forward (+)

12518 .. 18602

Gene Structure 6085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017507.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3228 bp

atggaggccaatgccggaatggtggccggctcttacaagaggaacgagctcgttcggatccgtcacgattccgatagctcagcgaagcccttgaagaatctgaacggccagatatgtcagatctgtggtgacactgtcggacttacagctactggcgatgtctttgttgcctgtaatgagtgtgccttcccagtgtgtcggccttgctatgagtatgagcgaaaagatgggaaccaggcttgtccgcaatgcaagactagatataaaaggcacaaagggagtcctcgcgtggacggagatgaggatgaggatgatattgatgatcttgagaatgagttcaattatgcacaaggaactagcaatgcaagacgccaatggcaaggagatgatcctgacctctcatcttcctctagacatgaatctggacagccaattccccttctcacaaatggacaatcgtcacttcaggtgtctggtgagataccctgtgctactcctgacaaccaatctgtgcgaactacatcaggtcctttggatccacggcagccagttcccgtgagaatagttgatccttcaaaggacttgaattcctatgggctaggaaatgttgactggaaagaaagggttgaaggatggaaactcaaacaggacaaaaatatgatgcagatgaccagtagataccctgaaggaaagggggacatggaaggcactggttcaaacggagaagaactccaaatggctgatgatgctcgacaacctttgagtcgtattgttcctatctcttcatctcatctgacaccttatcgtgttgtgatcatacttcggcttatcattctgggtttctttttgcaataccgtgcaactcacccagtgaaagatgcatatccattatggctaatatcagttatctgtgagatttggtttgctttttcatggcttctggatcagtttccaaaatggtttcccataaatcgtgagacctatcttgacaggctcgcactgaggtatgatcgtgacggggaaccatctcagttagctccagtagatgtgtttgtgagtacagtggatcccatgaaagaacctcctctggttacagccaacacagttttgtccatactttctgtggattaccctgtggacaaaatctcttgctatgtgtcagatgatggatctgcaatgctgacatttgaagccctttctgaaactgcggagtttgctagaaagtgggtgcctttctgcaagaaacacaacattgagcctagagctcctgagttttattttgctcaaaagattgattacttaaaagacaagatacagccttcttttgtaaaagagcgcagagcaatgaagagagagtatgaagaattcaaggtaaggattaatgccttagttgccaaggcacagaagatgcctgaagaaggttggacaatgcaggatgggactccatggcctgggaacaattctagggatcatccaggaatgatccaggtcttcttaggccacagtggcggccttgatacagatggcaatgagctgcctcgacttgtttatgtttctcgtgagaagagacctggcttccagcatcacaaaaaagctggagcaatgaatgcattgattcgagtttcagctgtcctgacaaatggtgcatatcttttgaacgtcgattgtgatcactacttcaataacagtaaagctgttaaggaagcaatgtgtttcatgatggacccagcttatgggaagaagacctgctatgtacagttcccacaacgtttcgatgggattgacatgcatgatcgatatgccaatcgtaacattgtcttctttgatatcaacttgaaagggttggatggcatccagggtccagtctatgtgggaactggttgctgtatcaacaggcaagcactatatgggtatgatcctgttttgactgaggaagatttggaaccaaacatcaacttcaagagttgttgtggttcaagaaagaagggaaagaccagcaataagaagtatattgacaagaagagggctgtcaaaagaactgaatcgaccattcccattttcaatatggaagacattgaggagggtgttgaaggttatgatgatgagaggtcccttcttatgtctcaaaagaacttagagaagcgttttggtcaatctccagtttttattgcagccaccttcatggaacaagggggcattccacctacaacaaaccctgcaactcttttgaaggaagccatacatgttataagctgtgggtatgaagacaagaccgaatggggaaaagagatcggatggatctatggttctgtgactgaagatattttaaccgggtttaagatgcatgctcgtggttggatatcagtctattgcatgcctccccgtccagcatttaaggggtctgctcccatcaatctttctgatcgtttgaaccaggtgcttcggtgggccttgggatctattgaaatcttgctcagcaggcattgtcccatatggtatggctacaatgggagaatgaagcttctggagagaattgcatacatcaataccattgtttatcccctcacatctataccactgattgcatactgtatgcttcctgcgttttgccttctcacaaataagttcatcattcctgagataagcaactttgctagcatgtggtttattcttctctttgtttcgattgccgcaactggagttcttgagcttaggtggagtggagtcggcattgatgactggtggagaaacgaacagttctgggtcattggtggaacatctgctcatcttttcgctgtcttccaaggtctcctaaaagttcttgccgggattgacaccaacttcactgtcacatcaaaggcctctgatgaggatggggattttgcagagctttatgtgttcaagtggacagcacttctcattcctcccactacagttctcattgtgaacttggtaggtatcgtggctggtgtttcatatgccataaacagtgggtaccaatcttgggggccactttttggcaaactgtttttcgccatgtgggtcgttgcccatctatacccattcttgaagggtctgttgggtcgccaaaatcgtacccctacgatcgtcattgtatggtctatcctccttgcttcgatattttccttgctatgggtgcgcatcgacccattcacatcagacgcttcaaaagctgcatcaaaaggtcaatgtggcgtcaattgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1075

Amino Acids

121.06

Weight (kDa)

6.34

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32410
fragaria_vesca	FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420
malus_domestica	MD08G1147200.v1.1 MD15G1123200.v1.1
prunus_persica	Prupe.1G478600_v2.0.a1 Prupe.1G478600_v2.0.a1
pyrus_communis	pycom08g12420 pycom15g11100
rosa_chinensis	RchiOBHm_Chr6g0298221
rosa_laevigata	RLG00000011525
rosa_multiflora	Rmu_sc0017507.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169850
rosa_rugosa	Rorug06G0279600 Rorug06G0279600
rosa_samantha	Rh6AG389900 Rh6BG398300 Rh6CG404200 Rh6DG390900
rosa_wichuraiana	Rw6G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2249
Acc16I	TGCGCA	1 cut(s)	3161
Acc36I	ACCTGC	1 cut(s)	1754
Acc65I	GGTACC	1 cut(s)	2994
AccB1I	GGYRCC	2 cut(s)	1228, 2994
AccB7I	CCANNNNNTGG	3 cut(s)	1451, 1733, 3017
AccII	CGCG	1 cut(s)	288
AciI	CCGC	4 cut(s)	245, 1208, 1509, 2691
AclI	AACGTT	1 cut(s)	1768
AcoI	YGGCCR	2 cut(s)	24, 106
AcsI	RAATTY	2 cut(s)	586, 1364
AcuI	CTGAAG	4 cut(s)	449, 705, 1434, 2337
AcyI	GRCGYC	2 cut(s)	370, 3216
AdeI	CACNNNGTG	1 cut(s)	871
AfaI	GTAC	4 cut(s)	1060, 1755, 2996, 3097
AfiI	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
AflIII	ACRYGT	1 cut(s)	2242
AjnI	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
AjuI	GAANNNNNNNTTGG	2 cut(s)	3062, 3094
AloI	GAACNNNNNNTCC	2 cut(s)	2290, 2322
Alw21I	GWGCWC	2 cut(s)	51, 1267
Alw26I	GTCTC	4 cut(s)	971, 1561, 2127, 2813
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	4 cut(s)	544, 1534, 2171, 3194
ApoI	RAATTY	2 cut(s)	586, 1364
AseI	ATTAAT	1 cut(s)	1380
Asp700I	GAANNNNTTC	1 cut(s)	335
Asp718I	GGTACC	1 cut(s)	2994
AspLEI	GCGC	2 cut(s)	1338, 3162
AspS9I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
AsuC2I	CCSGG	2 cut(s)	2332, 2827
AsuHPI	GGTGA	3 cut(s)	140, 488, 857
AsuNHI	GCTAGC	1 cut(s)	2654
AvaII	GGWCC	4 cut(s)	527, 1723, 1859, 2109
BamHI	GGATCC	3 cut(s)	57, 535, 1066
BanI	GGYRCC	2 cut(s)	1228, 2994
BanII	GRGCYC	2 cut(s)	51, 1267
BauI	CACGAG	2 cut(s)	1557, 2349
BbsI	GAAGAC	6 cut(s)	1483, 1748, 1810, 2076, 2271, 2791
Bbv12I	GWGCWC	2 cut(s)	51, 1267
BbvI	GCAGC	4 cut(s)	556, 1521, 2183, 3181
BceAI	ACGGC	2 cut(s)	121, 557
BciT130I	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
BclI	TGATCA	2 cut(s)	813, 1669
BcnI	CCSGG	2 cut(s)	2332, 2827
BcoDI	GTCTC	4 cut(s)	971, 1561, 2127, 2813
BfaI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
BfmI	CTRYAG	1 cut(s)	2931
BfuAI	ACCTGC	1 cut(s)	1754
BglI	GCCNNNNNGGC	1 cut(s)	1506
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
BlpI	GCTNAGC	2 cut(s)	79, 2474
BlsI	GCNGC	6 cut(s)	546, 1511, 1536, 2173, 2692, 3196
Bme1390I	CCNGG	9 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435, 2827
Bme18I	GGWCC	4 cut(s)	527, 1723, 1859, 2109
BmgT120I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
BmrFI	CCNGG	9 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435, 2827
BmrI	ACTGGG	2 cut(s)	185, 863
BmsI	GCATC	9 cut(s)	651, 736, 868, 1398, 1591, 1860, 2331, 3171, 3206
BmtI	GCTAGC	1 cut(s)	2658
BmuI	ACTGGG	2 cut(s)	185, 863
BoxI	GACNNNNGTC	1 cut(s)	457
BpiI	GAAGAC	6 cut(s)	1483, 1748, 1810, 2076, 2271, 2791
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	5 cut(s)	1023, 1617, 2142, 2546, 2718
Bpu10I	CCTNAGC	1 cut(s)	2711
Bpu1102I	GCTNAGC	2 cut(s)	79, 2474
BpuEI	CTTGAG	2 cut(s)	347, 2726
BpuMI	CCSGG	2 cut(s)	2332, 2827
Bsa29I	ATCGAT	1 cut(s)	1795
BsaBI	GATNNNNATC	2 cut(s)	882, 1668
BsaHI	GRCGYC	2 cut(s)	370, 3216
BsaI	GGTCTC	3 cut(s)	971, 1561, 2813
BsaJI	CCNNGG	7 cut(s)	539, 1395, 1445, 1451, 1855, 2451, 2803
Bsc4I	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
Bse118I	RCCGGY	1 cut(s)	26
Bse3DI	GCAATG	7 cut(s)	254, 367, 1182, 1350, 1534, 1608, 1713
Bse8I	GATNNNNATC	2 cut(s)	882, 1668
BseBI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
BseCI	ATCGAT	1 cut(s)	1795
BseDI	CCNNGG	7 cut(s)	539, 1395, 1445, 1451, 1855, 2451, 2803
BseGI	GGATG	9 cut(s)	310, 316, 638, 1441, 1471, 1851, 1852, 2300, 2878
BseJI	GATNNNNATC	2 cut(s)	882, 1668
BseLI	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
BseMI	GCAATG	7 cut(s)	254, 367, 1182, 1350, 1534, 1608, 1713
BseMII	CTCAG	7 cut(s)	93, 992, 1043, 1260, 1920, 2488, 2628
BseRI	GAGGAG	2 cut(s)	1074, 2093
BseXI	GCAGC	4 cut(s)	556, 1521, 2183, 3181
BseYI	CCCAGC	1 cut(s)	1726
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	3108
BshNI	GGYRCC	2 cut(s)	1228, 2994
BshVI	ATCGAT	1 cut(s)	1795
BsiEI	CGRYCG	1 cut(s)	3108
BsiHKAI	GWGCWC	2 cut(s)	51, 1267
BsiSI	CCGG	4 cut(s)	15, 27, 2331, 2826
BslFI	GGGAC	4 cut(s)	710, 1453, 2095, 2472
BslI	CCNNNNNNNGG	6 cut(s)	1418, 1451, 1733, 3004, 3017, 3153
BsmAI	GTCTC	4 cut(s)	971, 1561, 2127, 2813
BsmFI	GGGAC	4 cut(s)	710, 1453, 2095, 2472
BsmI	GAATGC	2 cut(s)	1612, 2196
Bso31I	GGTCTC	3 cut(s)	971, 1561, 2813
Bsp1286I	GDGCHC	2 cut(s)	51, 1267
Bsp1407I	TGTACA	1 cut(s)	1753
Bsp1720I	GCTNAGC	2 cut(s)	79, 2474
Bsp19I	CCATGG	1 cut(s)	1445
BspACI	CCGC	4 cut(s)	245, 1208, 1509, 2691
BspCNI	CTCAG	7 cut(s)	92, 993, 1042, 1261, 1921, 2487, 2629
BspDI	ATCGAT	1 cut(s)	1795
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	1716
BspMI	ACCTGC	1 cut(s)	1754
BspOI	GCTAGC	1 cut(s)	2658
BspT107I	GGYRCC	2 cut(s)	1228, 2994
BspTNI	GGTCTC	3 cut(s)	971, 1561, 2813
BsrDI	GCAATG	7 cut(s)	254, 367, 1182, 1350, 1534, 1608, 1713
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	1753
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	7 cut(s)	539, 1395, 1445, 1451, 1855, 2451, 2803
BssNI	GRCGYC	2 cut(s)	370, 3216
BssSI	CACGAG	2 cut(s)	1557, 2349
BssT1I	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
Bst2BI	CACGAG	2 cut(s)	1557, 2349
Bst2UI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
Bst6I	CTCTTC	4 cut(s)	787, 1343, 1559, 2015
BstACI	GRCGYC	2 cut(s)	370, 3216
BstAPI	GCANNNNNTGC	1 cut(s)	1607
BstAUI	TGTACA	1 cut(s)	1753
BstC8I	GCNNGC	7 cut(s)	28, 996, 1899, 2346, 2375, 2480, 2656
BstDSI	CCRYGG	2 cut(s)	539, 1445
BstENI	CCTNNNNNAGG	1 cut(s)	1416
BstF5I	GGATG	9 cut(s)	310, 316, 638, 1441, 1471, 1851, 1852, 2300, 2878
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	1338, 3162
BstMAI	GTCTC	4 cut(s)	971, 1561, 2127, 2813
BstMCI	CGRYCG	1 cut(s)	3108
BstMWI	GCNNNNNNNGC	8 cut(s)	746, 1214, 1391, 1506, 1607, 2479, 3157, 3191
BstNI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
BstNSI	RCATGY	5 cut(s)	1789, 2246, 2348, 2377, 2662
BstPAI	GACNNNNGTC	1 cut(s)	457
BstSCI	CCNGG	9 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2330, 2433, 2825
BstSFI	CTRYAG	1 cut(s)	2931
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	556, 1521, 2183, 3181
BstV2I	GAAGAC	6 cut(s)	1483, 1748, 1810, 2076, 2271, 2791
BstX2I	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
BstXI	CCANNNNNNTGG	1 cut(s)	2182
BstYI	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
Bsu15I	ATCGAT	1 cut(s)	1795
BsuTUI	ATCGAT	1 cut(s)	1795
BtgI	CCRYGG	2 cut(s)	539, 1445
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	9 cut(s)	310, 316, 638, 1441, 1471, 1851, 1852, 2300, 2878
BveI	ACCTGC	1 cut(s)	1754
Cac8I	GCNNGC	7 cut(s)	28, 996, 1899, 2346, 2375, 2480, 2656
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	1716
CfoI	GCGC	2 cut(s)	1338, 3162
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
ClaI	ATCGAT	1 cut(s)	1795
CseI	GACGC	3 cut(s)	378, 3191, 3205
CsiI	ACCWGGT	1 cut(s)	2433
Csp6I	GTAC	4 cut(s)	1059, 1754, 2995, 3096
CviQI	GTAC	4 cut(s)	1059, 1754, 2995, 3096
DraIII	CACNNNGTG	1 cut(s)	871
EaeI	YGGCCR	2 cut(s)	24, 106
Eam1104I	CTCTTC	4 cut(s)	787, 1343, 1559, 2015
EarI	CTCTTC	4 cut(s)	787, 1343, 1559, 2015
Ecl136II	GAGCTC	2 cut(s)	49, 1265
Eco130I	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
Eco147I	AGGCCT	1 cut(s)	2861
Eco24I	GRGCYC	2 cut(s)	51, 1267
Eco31I	GGTCTC	3 cut(s)	971, 1561, 2813
Eco32I	GATATC	2 cut(s)	1828, 2361
Eco47I	GGWCC	4 cut(s)	527, 1723, 1859, 2109
Eco53kI	GAGCTC	2 cut(s)	49, 1265
Eco57I	CTGAAG	4 cut(s)	449, 705, 1434, 2337
EcoICRI	GAGCTC	2 cut(s)	49, 1265
EcoNI	CCTNNNNNAGG	1 cut(s)	1416
EcoO109I	RGGNCCY	2 cut(s)	527, 2109
EcoRI	GAATTC	2 cut(s)	586, 1364
EcoRII	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
EcoRV	GATATC	2 cut(s)	1828, 2361
EcoT14I	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
EcoT22I	ATGCAT	4 cut(s)	883, 1612, 1791, 2346
EcoT38I	GRGCYC	2 cut(s)	51, 1267
ErhI	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
FaqI	GGGAC	4 cut(s)	710, 1453, 2095, 2472
FauNDI	CATATG	2 cut(s)	2492, 2977
FbaI	TGATCA	2 cut(s)	813, 1669
Fnu4HI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
FokI	GGATG	9 cut(s)	317, 323, 645, 1448, 1458, 1838, 1859, 2307, 2885
FriOI	GRGCYC	2 cut(s)	51, 1267
Fsp4HI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
FspAI	RTGCGCAY	1 cut(s)	3161
FspBI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
FspI	TGCGCA	1 cut(s)	3161
GlaI	GCGC	2 cut(s)	1337, 3161
GluI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
GsaI	CCCAGC	1 cut(s)	1730
GsuI	CTGGAG	5 cut(s)	1023, 1617, 2142, 2546, 2718
HapII	CCGG	4 cut(s)	15, 27, 2331, 2826
HgaI	GACGC	3 cut(s)	378, 3191, 3205
HhaI	GCGC	2 cut(s)	1338, 3162
Hin1I	GRCGYC	2 cut(s)	370, 3216
Hin6I	GCGC	2 cut(s)	1336, 3160
HinP1I	GCGC	2 cut(s)	1336, 3160
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	2519
HinfI	GANTC	9 cut(s)	68, 97, 280, 419, 763, 1441, 1615, 2042, 2724
HpaII	CCGG	4 cut(s)	15, 27, 2331, 2826
HphI	GGTGA	3 cut(s)	140, 488, 857
Hpy166II	GTNNAC	5 cut(s)	292, 610, 1138, 2907, 2947
Hpy8I	GTNNAC	5 cut(s)	292, 610, 1138, 2907, 2947
Hpy99I	CGWCG	1 cut(s)	1664
HpyCH4IV	ACGT	2 cut(s)	1659, 1768
HpyF10VI	GCNNNNNNNGC	8 cut(s)	746, 1214, 1391, 1506, 1607, 2479, 3157, 3191
HpySE526I	ACGT	2 cut(s)	1659, 1768
Hsp92I	GRCGYC	2 cut(s)	370, 3216
HspAI	GCGC	2 cut(s)	1336, 3160
KpnI	GGTACC	1 cut(s)	2998
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	2 cut(s)	813, 1669
LmnI	GCTCC	4 cut(s)	1042, 1270, 1598, 2410
Lsp1109I	GCAGC	4 cut(s)	556, 1521, 2183, 3181
LweI	GCATC	9 cut(s)	651, 736, 868, 1398, 1591, 1860, 2331, 3171, 3206
MabI	ACCWGGT	1 cut(s)	2433
MaeI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
MaeII	ACGT	2 cut(s)	1659, 1768
MaeIII	GTNAC	8 cut(s)	62, 128, 459, 1013, 1090, 1808, 2311, 2848
MfeI	CAATTG	1 cut(s)	3220
MflI	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
MhlI	GDGCHC	2 cut(s)	51, 1267
MluCI	AATT	7 cut(s)	340, 432, 586, 1364, 1459, 2532, 3220
MlyI	GAGTC	4 cut(s)	289, 772, 1435, 2733
MmeI	TCCRAC	4 cut(s)	118, 1403, 1824, 2336
Mph1103I	ATGCAT	4 cut(s)	883, 1612, 1791, 2346
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
MslI	CAYNNNNRTG	2 cut(s)	2180, 2349
MspA1I	CMGCKG	1 cut(s)	1628
MspI	CCGG	4 cut(s)	15, 27, 2331, 2826
MspR9I	CCNGG	9 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435, 2827
MunI	CAATTG	1 cut(s)	3220
Mva1269I	GAATGC	2 cut(s)	1612, 2196
MvaI	CCWGG	7 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2435
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	8 cut(s)	746, 1214, 1391, 1506, 1607, 2479, 3157, 3191
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	2 cut(s)	2332, 2827
NcoI	CCATGG	1 cut(s)	1445
NdeI	CATATG	2 cut(s)	2492, 2977
NgoMIV	GCCGGC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	2654
NmuCI	GTSAC	6 cut(s)	62, 128, 459, 1013, 2311, 2848
NsbI	TGCGCA	1 cut(s)	3161
NsiI	ATGCAT	4 cut(s)	883, 1612, 1791, 2346
NspI	RCATGY	5 cut(s)	1789, 2246, 2348, 2377, 2662
PaeI	GCATGC	2 cut(s)	2348, 2377
PagI	TCATGA	1 cut(s)	1716
PceI	AGGCCT	1 cut(s)	2861
PciI	ACATGT	1 cut(s)	2242
PcsI	WCGNNNNNNNCGW	1 cut(s)	3091
PctI	GAATGC	2 cut(s)	1612, 2196
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	5 cut(s)	68, 97, 419, 1615, 2042
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	3 cut(s)	1451, 1733, 3017
PfoI	TCCNGGA	1 cut(s)	1474
PkrI	GCNGC	6 cut(s)	546, 1511, 1536, 2173, 2692, 3196
Ple19I	CGATCG	1 cut(s)	3108
PleI	GAGTC	4 cut(s)	288, 771, 1435, 2732
PpsI	GAGTC	4 cut(s)	288, 771, 1435, 2732
PpuMI	RGGWCCY	2 cut(s)	527, 2109
PscI	ACATGT	1 cut(s)	2242
PshAI	GACNNNNGTC	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	1380
PsiI	TTATAA	1 cut(s)	2249
Psp124BI	GAGCTC	2 cut(s)	51, 1267
Psp1406I	AACGTT	1 cut(s)	1768
Psp5II	RGGWCCY	2 cut(s)	527, 2109
Psp6I	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
PspFI	CCCAGC	1 cut(s)	1726
PspGI	CCWGG	7 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2433
PspPI	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
PspPPI	RGGWCCY	2 cut(s)	527, 2109
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	7 cut(s)	57, 120, 535, 1066, 1169, 2298, 2456
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	3108
PvuII	CAGCTG	1 cut(s)	1628
RsaI	GTAC	4 cut(s)	1060, 1755, 2996, 3097
RsaNI	GTAC	4 cut(s)	1059, 1754, 2995, 3096
RseI	CAYNNNNRTG	2 cut(s)	2180, 2349
SacI	GAGCTC	2 cut(s)	51, 1267
SaqAI	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
SatI	GCNGC	6 cut(s)	545, 1510, 1535, 2172, 2691, 3195
Sau96I	GGNCC	6 cut(s)	527, 1723, 1859, 2109, 2448, 3008
SchI	GAGTC	4 cut(s)	289, 772, 1435, 2733
ScrFI	CCNGG	9 cut(s)	236, 1452, 1476, 1487, 1572, 1856, 2332, 2435, 2827
SduI	GDGCHC	2 cut(s)	51, 1267
SexAI	ACCWGGT	1 cut(s)	2433
SfaNI	GCATC	9 cut(s)	651, 736, 868, 1398, 1591, 1860, 2331, 3171, 3206
SfcI	CTRYAG	1 cut(s)	2931
SinI	GGWCC	4 cut(s)	527, 1723, 1859, 2109
SmiMI	CAYNNNNRTG	2 cut(s)	2180, 2349
SmlI	CTYRAG	2 cut(s)	326, 2705
SmoI	CTYRAG	2 cut(s)	326, 2705
SphI	GCATGC	2 cut(s)	2348, 2377
Sse9I	AATT	7 cut(s)	340, 432, 586, 1364, 1459, 2532, 3220
SseBI	AGGCCT	1 cut(s)	2861
SsiI	CCGC	4 cut(s)	245, 1208, 1509, 2691
SspMI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
SstI	GAGCTC	2 cut(s)	51, 1267
StuI	AGGCCT	1 cut(s)	2861
StyD4I	CCNGG	9 cut(s)	234, 1450, 1474, 1485, 1570, 1854, 2330, 2433, 2825
StyI	CCWWGG	4 cut(s)	1395, 1445, 2451, 2803
TaiI	ACGT	2 cut(s)	1662, 1771
TaqII	GACCGA	1 cut(s)	2288
TasI	AATT	7 cut(s)	340, 432, 586, 1364, 1459, 2532, 3220
TatI	WGTACW	2 cut(s)	1058, 1753
TauI	GCSGC	2 cut(s)	1512, 2693
TfiI	GAWTC	5 cut(s)	68, 97, 419, 1615, 2042
Tru1I	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
Tru9I	TTAA	6 cut(s)	1301, 1380, 1698, 2327, 2337, 2394
TseFI	GTSAC	6 cut(s)	62, 128, 459, 1013, 2311, 2848
TseI	GCWGC	4 cut(s)	544, 1534, 2171, 3194
Tsp45I	GTSAC	6 cut(s)	62, 128, 459, 1013, 2311, 2848
TspGWI	ACGGA	3 cut(s)	50, 309, 735
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	3 cut(s)	1451, 1733, 3017
VpaK11BI	GGWCC	4 cut(s)	527, 1723, 1859, 2109
VspI	ATTAAT	1 cut(s)	1380
XagI	CCTNNNNNAGG	1 cut(s)	1416
XapI	RAATTY	2 cut(s)	586, 1364
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	5 cut(s)	1789, 2246, 2348, 2377, 2662
XcmI	CCANNNNNNNNNTGG	3 cut(s)	16, 1120, 2062
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	8 cut(s)	258, 357, 411, 599, 1218, 1260, 1464, 2655
Zsp2I	ATGCAT	4 cut(s)	883, 1612, 1791, 2346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.