Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006442

Physical Location & Seq

Genomic Coordinates Reverse (-)

58296955 .. 58303690

Gene Structure 6736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG390900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3153 bp

ATGCAGGCGAAGCCCTTGAAGAATCTGAACGGCCAGATATGTCAGATCTGTGGTGACACTGTCGGACTTACAGCTACTGGCGATGTCTTTGTTGCCTGTAATGAGTGTGCCTTCCCAGTTTGTCGGCCTTGTTATGAGTACGAGCGGAAAGATGGGAACCAGGCTTGTCCGCAATGCAAGACTAGATATAAAAGGCACAAAGGGAGTCCTCGCGTGGACGGAGATGAGGATGAGGATGATATTGATGATCTTGAGAATGAGTTCAATTATGCACAAGGAACTAGCAATGCAAGACGCCAATGGCAAGGAGATGATCCTGACCTCTCATCTTCCTCTAGACATGAATCTGGACAGCCAATTCCCCTTCTCACAAATGGACAATCGTCTCTTCAGGTGTCTGGTGAGATACCCTGTGCTACTCCTGACAACCAATCTGTGCGAACTACATCAGGTCCTTTGGATCCACGGCAGCCAGTTCCCGTGAGAATAGTTGATCCTTCAAAGGACTTGAATTCCTATGGGCTAGGAAATGTTGACTGGAAAGAAAGGGTCGAAGGATGGAAACTCAAACAGGACAAAAATATGATGCAGATGACCAGTAGATACCCTGAAGGAAAGGGGGACATGGAAGGCACTGGTTCAAATGGAGAAGAACTCCAAATGGCTGATGATGCTCGACAACCTTTGAGTCGTATTGTTCCTATCTCTTCATCTCATCTGACACCTTATCGTGTTGTGATCATACTTCGGCTTATCATTCTGGGTTTCTTTTTGCAATACCGTGCAACTCACCCAGTGAAAGATGCATATCCATTATGGCTAATATCAGTTATCTGTGAGATTTGGTTTGCTTTTTCATGGCTTCTGGATCAGTTTCCAAAATGGTTTCCCATAAATCGTGAGACCTATCTTGACAGGCTTGCACTGAGGTATGATCGTGATGGGGAACCATCTCAGTTAGCTCCAGTAGATGTGTTTGTGAGTACAGTGGATCCCATGAAAGAACCTCCTCTGGTTACAGCCAACACAGTTTTGTCCATACTTTCTGTGGATTACCCTGTGGACAAAATCTCTTGCTATGTGTCAGATGATGGATCTGCAATGCTGACATTTGAATCCCTTTCTGAAACTGCGGAGTTTGCTAGAAAGTGGGTGCCTTTCTGCAAGAAACACAACATTGAACCTAGAGCTCCTGAGTTTTATTTTGCTCAAAAGATTGATTACTTAAAAGACAAGATACAGCCTTCTTTTGTAAAAGAGCGCAGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATAAGGATTAATGCCTTAGTTGCCAAGGCACAGAAGATGCCTGACGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATTCTAGGGATCATCCAGGAATGATCCAGGTCTTCTTAGGCCACAGTGGCGGCCTTGATACAGATGGCAATGAGCTGCCTCGACTTGTTTATGTTTCTCGTGAGAAGAGACCTGGCTTCCAGCATCACAAAAAAGCTGGAGCAATGAATGCATTGATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGCTTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAACGTTTCGATGGGATTGACATGCACGATCGATATGCCAATCGTAACATTGTCTTCTTTGATATCAACTTGAAAGGGTTGGATGGCATCCAGGGTCCAGTCTATGTGGGAACTGGTTGCTGTTTCAACAGGCAAGCGCTATATGGGTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCAAACATCATATTCAAGAGTTGTTGTGGTTCAAGAAAGAAGGGAAAGACCAGCAATAAGAAGTATATTGACAAGAAGAGGGCTGTCAAAAGAACTGAATCTACCATTCCCATTTTCAATATGGAAGACATTGAGGAGGGTGTTGAAGGTTATGATGATGAGAGGTCCCTTCTTATGTCTCAAAAGAGCTTAGAGAAGCGTTTTGGTCAATCTCCAGTTTTTATTGCAGCCACCTTCATGGAACAAGGGGGCATTCCACCTACAACAAACCCTGCAACTCTTTTGAAGGAAGCCATACATGTTATAAGCTGTGGGTATGAAGACAAGACCGAATGGGGAAAAGAGATCGGATGGATCTATGGTTCTGTGACTGAAGATATTTTAACCGGGTTTAAGATGCATGCTCGTGGTTGGATATCAGTCTATTGCATGCCTCCCCGTCCAGCATTTAAGGGGTCTGCTCCCATCAATCTTTCTGATCGTTTGAACCAGGTGCTTCGGTGGGCCTTGGGATCCATTGAAATCTTGCTCAGCAGGCATTGTCCCATATGGTATGGCTACAATGGGAGAATGAAGCTTCTGGAGAGAATTGCATACATCAATACCATTGTTTATCCCCTCACATCTATACCACTGATTGCATACTGTATGCTTCCTGCGTTTTGCCTTCTCACAAATAAGTTCATCATTCCTGAGATAAGCAACTTCGCTAGCATGTGGTTTATTCTTCTCTTTGTTTCGATTGCCGCAACTGGAGTTCTTGAGCTTAGGTGGAGTGGAGTCGGCATTGATGACTGGTGGAGAAACGAACAGTTCTGGGTCATCGGTGGAACATCTGCTCATCTTTTCGCTGTCTTCCAAGGTCTCCTAAAAGTTCTTGCTGGGATTGACACCAACTTCACTGTCACATCAAAGGCCTCTGATGAGGATGGGGATTTTGCAGAGCTTTATGTGTTCAAGTGGACAGCACTTCTCATTCCTCCCACCACAGTTCTCATTGTGAACTTGGTAGGTATCGTGGCCGGTGTTTCATATGCCATAAACAGTGGGTACCAATCTTGGGGGCCACTTTTTGGCAAACTGTTTTTCGCCATGTGGGTCGTTGCCCATCTATACCCATTCTTGAAGGGTCTGTTGGGTCGCCAAAATCGTACCCCTACGATCGTCATTGTATGGTCTATCCTCCTTGCTTCGATATTTTCCTTGCTATGGGTGCGCATCGACCCATTCACATCAGACGCTTCAAAAGCTGCATCAAAAGGTCAATGTGGCGTCAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1050

Amino Acids

118.36

Weight (kDa)

6.31

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	4 - 80	4e-45	Zinc-binding RING-finger
Cellulose_synt	PF03552	323 - 1041	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	738 - 845	6.3e-08	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32410
fragaria_vesca	FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420
malus_domestica	MD08G1147200.v1.1 MD15G1123200.v1.1
prunus_persica	Prupe.1G478600_v2.0.a1 Prupe.1G478600_v2.0.a1
pyrus_communis	pycom08g12420 pycom15g11100
rosa_chinensis	RchiOBHm_Chr6g0298221
rosa_laevigata	RLG00000011525
rosa_multiflora	Rmu_sc0017507.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169850
rosa_rugosa	Rorug06G0279600 Rorug06G0279600
rosa_samantha	Rh6AG389900 Rh6BG398300 Rh6CG404200 Rh6DG390900
rosa_wichuraiana	Rw6G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2174
Acc16I	TGCGCA	1 cut(s)	3086
Acc36I	ACCTGC	1 cut(s)	1679
Acc65I	GGTACC	1 cut(s)	2919
AccB1I	GGYRCC	2 cut(s)	1153, 2919
AccB7I	CCANNNNNTGG	3 cut(s)	1376, 1658, 2942
AccBSI	CCGCTC	1 cut(s)	145
AccII	CGCG	1 cut(s)	213
AciI	CCGC	5 cut(s)	145, 170, 1133, 1434, 2616
AclI	AACGTT	1 cut(s)	1693
AcoI	YGGCCR	2 cut(s)	31, 2889
AcsI	RAATTY	2 cut(s)	511, 1289
AcuI	CTGAAG	3 cut(s)	374, 630, 2262
AcyI	GRCGYC	2 cut(s)	295, 3141
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	5 cut(s)	140, 985, 1680, 2921, 3022
AfeI	AGCGCT	1 cut(s)	1827
AfiI	CCNNNNNNNGG	6 cut(s)	1343, 1376, 1658, 2929, 2942, 3078
AflIII	ACRYGT	1 cut(s)	2167
AjnI	CCWGG	7 cut(s)	159, 1375, 1399, 1410, 1495, 1779, 2358
AjuI	GAANNNNNNNTTGG	2 cut(s)	2987, 3019
AloI	GAACNNNNNNTCC	2 cut(s)	2215, 2247
Alw21I	GWGCWC	1 cut(s)	1192
Alw26I	GTCTC	5 cut(s)	390, 896, 1486, 2052, 2738
AlwNI	CAGNNNCTG	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	1827
AoxI	GGCC	9 cut(s)	31, 125, 1373, 1423, 1435, 2373, 2784, 2889, 2933
ApeKI	GCWGC	4 cut(s)	469, 1459, 2096, 3119
ApoI	RAATTY	2 cut(s)	511, 1289
AseI	ATTAAT	1 cut(s)	1305
Asp700I	GAANNNNTTC	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	2919
AspLEI	GCGC	3 cut(s)	1263, 1828, 3087
AspS9I	GGNCC	6 cut(s)	452, 1648, 1784, 2034, 2373, 2933
AsuC2I	CCSGG	1 cut(s)	2257
AsuHPI	GGTGA	3 cut(s)	65, 413, 782
AsuNHI	GCTAGC	1 cut(s)	2579
AvaII	GGWCC	4 cut(s)	452, 1648, 1784, 2034
BamHI	GGATCC	3 cut(s)	460, 991, 2381
BanI	GGYRCC	2 cut(s)	1153, 2919
BanII	GRGCYC	1 cut(s)	1192
BauI	CACGAG	2 cut(s)	1482, 2274
BbsI	GAAGAC	6 cut(s)	1408, 1673, 1735, 2001, 2196, 2716
Bbv12I	GWGCWC	1 cut(s)	1192
BbvI	GCAGC	4 cut(s)	481, 1446, 2108, 3106
BceAI	ACGGC	2 cut(s)	46, 482
BcgI	CGANNNNNNTGC	2 cut(s)	1706, 1740
BciT130I	CCWGG	7 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2360
BclI	TGATCA	2 cut(s)	738, 1594
BcnI	CCSGG	1 cut(s)	2257
BcoDI	GTCTC	5 cut(s)	390, 896, 1486, 2052, 2738
BfaI	CTAG	8 cut(s)	183, 282, 336, 524, 1143, 1185, 1389, 2580
BfoI	RGCGCY	1 cut(s)	1829
BfuAI	ACCTGC	1 cut(s)	1679
BglI	GCCNNNNNGGC	1 cut(s)	1431
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	6 cut(s)	470, 1435, 1460, 2097, 2616, 3120
BlpI	GCTNAGC	1 cut(s)	2399
BlsI	GCNGC	6 cut(s)	471, 1436, 1461, 2098, 2617, 3121
Bme1390I	CCNGG	8 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2257, 2360
Bme18I	GGWCC	4 cut(s)	452, 1648, 1784, 2034
BmgT120I	GGNCC	6 cut(s)	452, 1648, 1784, 2034, 2373, 2933
BmrFI	CCNGG	8 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2257, 2360
BmrI	ACTGGG	2 cut(s)	110, 788
BmsI	GCATC	9 cut(s)	576, 661, 793, 1323, 1516, 1785, 2256, 3096, 3131
BmtI	GCTAGC	1 cut(s)	2583
BmuI	ACTGGG	2 cut(s)	110, 788
BoxI	GACNNNNGTC	1 cut(s)	382
BpiI	GAAGAC	6 cut(s)	1408, 1673, 1735, 2001, 2196, 2716
BplI	GAGNNNNNCTC	2 cut(s)	639, 671
BpmI	CTGGAG	5 cut(s)	948, 1542, 2067, 2471, 2643
Bpu10I	CCTNAGC	1 cut(s)	2636
Bpu1102I	GCTNAGC	1 cut(s)	2399
BpuEI	CTTGAG	2 cut(s)	272, 2651
BpuMI	CCSGG	1 cut(s)	2257
Bsa29I	ATCGAT	1 cut(s)	1720
BsaBI	GATNNNNATC	2 cut(s)	807, 1593
BsaHI	GRCGYC	2 cut(s)	295, 3141
BsaI	GGTCTC	3 cut(s)	896, 1486, 2738
BsaJI	CCNNGG	7 cut(s)	464, 1320, 1370, 1376, 1780, 2376, 2728
Bsc4I	CCNNNNNNNGG	6 cut(s)	1343, 1376, 1658, 2929, 2942, 3078
Bse118I	RCCGGY	1 cut(s)	2891
Bse3DI	GCAATG	7 cut(s)	179, 292, 1107, 1275, 1459, 1533, 1638
Bse8I	GATNNNNATC	2 cut(s)	807, 1593
BseBI	CCWGG	7 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2360
BseCI	ATCGAT	1 cut(s)	1720
BseDI	CCNNGG	7 cut(s)	464, 1320, 1370, 1376, 1780, 2376, 2728
BseGI	GGATG	9 cut(s)	235, 241, 563, 1366, 1396, 1776, 1777, 2225, 2803
BseJI	GATNNNNATC	2 cut(s)	807, 1593
BseLI	CCNNNNNNNGG	6 cut(s)	1343, 1376, 1658, 2929, 2942, 3078
BseMI	GCAATG	7 cut(s)	179, 292, 1107, 1275, 1459, 1533, 1638
BseMII	CTCAG	6 cut(s)	917, 968, 1185, 1845, 2413, 2553
BseRI	GAGGAG	2 cut(s)	999, 2018
BseXI	GCAGC	4 cut(s)	481, 1446, 2108, 3106
BseYI	CCCAGC	2 cut(s)	1651, 2750
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	2 cut(s)	1720, 3033
BshFI	GGCC	9 cut(s)	33, 127, 1375, 1425, 1437, 2375, 2786, 2891, 2935
BshNI	GGYRCC	2 cut(s)	1153, 2919
BshVI	ATCGAT	1 cut(s)	1720
BsiEI	CGRYCG	2 cut(s)	1720, 3033
BsiHKAI	GWGCWC	1 cut(s)	1192
BsiSI	CCGG	2 cut(s)	2256, 2892
BslFI	GGGAC	4 cut(s)	635, 1378, 2020, 2397
BslI	CCNNNNNNNGG	6 cut(s)	1343, 1376, 1658, 2929, 2942, 3078
BsmAI	GTCTC	5 cut(s)	390, 896, 1486, 2052, 2738
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	4 cut(s)	635, 1378, 2020, 2397
BsmI	GAATGC	2 cut(s)	1537, 2121
BsnI	GGCC	9 cut(s)	33, 127, 1375, 1425, 1437, 2375, 2786, 2891, 2935
Bso31I	GGTCTC	3 cut(s)	896, 1486, 2738
Bsp1286I	GDGCHC	1 cut(s)	1192
Bsp1407I	TGTACA	1 cut(s)	1678
Bsp1720I	GCTNAGC	1 cut(s)	2399
Bsp19I	CCATGG	1 cut(s)	1370
BspACI	CCGC	5 cut(s)	145, 170, 1133, 1434, 2616
BspANI	GGCC	9 cut(s)	33, 127, 1375, 1425, 1437, 2375, 2786, 2891, 2935
BspCNI	CTCAG	6 cut(s)	918, 967, 1186, 1846, 2412, 2554
BspDI	ATCGAT	1 cut(s)	1720
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	1641
BspMI	ACCTGC	1 cut(s)	1679
BspOI	GCTAGC	1 cut(s)	2583
BspT107I	GGYRCC	2 cut(s)	1153, 2919
BspTNI	GGTCTC	3 cut(s)	896, 1486, 2738
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	7 cut(s)	179, 292, 1107, 1275, 1459, 1533, 1638
BsrFI	RCCGGY	1 cut(s)	2891
BsrGI	TGTACA	1 cut(s)	1678
BssAI	RCCGGY	1 cut(s)	2891
BssECI	CCNNGG	7 cut(s)	464, 1320, 1370, 1376, 1780, 2376, 2728
BssNI	GRCGYC	2 cut(s)	295, 3141
BssSI	CACGAG	2 cut(s)	1482, 2274
BssT1I	CCWWGG	4 cut(s)	1320, 1370, 2376, 2728
Bst2BI	CACGAG	2 cut(s)	1482, 2274
Bst2UI	CCWGG	7 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2360
Bst6I	CTCTTC	5 cut(s)	393, 712, 1268, 1484, 1940
BstACI	GRCGYC	2 cut(s)	295, 3141
BstAPI	GCANNNNNTGC	1 cut(s)	1532
BstAUI	TGTACA	1 cut(s)	1678
BstC8I	GCNNGC	7 cut(s)	6, 921, 1824, 2271, 2300, 2405, 2581
BstDSI	CCRYGG	2 cut(s)	464, 1370
BstENI	CCTNNNNNAGG	1 cut(s)	1341
BstF5I	GGATG	9 cut(s)	235, 241, 563, 1366, 1396, 1776, 1777, 2225, 2803
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	1829
BstHHI	GCGC	3 cut(s)	1263, 1828, 3087
BstMAI	GTCTC	5 cut(s)	390, 896, 1486, 2052, 2738
BstMCI	CGRYCG	2 cut(s)	1720, 3033
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 671, 1139, 1316, 1431, 1532, 2404, 3082, 3116
BstNI	CCWGG	7 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2360
BstNSI	RCATGY	5 cut(s)	1714, 2171, 2273, 2302, 2587
BstPAI	GACNNNNGTC	1 cut(s)	382
BstSCI	CCNGG	8 cut(s)	159, 1375, 1399, 1410, 1495, 1779, 2255, 2358
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	481, 1446, 2108, 3106
BstV2I	GAAGAC	6 cut(s)	1408, 1673, 1735, 2001, 2196, 2716
BstX2I	RGATCY	6 cut(s)	45, 460, 991, 1094, 2223, 2381
BstXI	CCANNNNNNTGG	1 cut(s)	2107
BstYI	RGATCY	6 cut(s)	45, 460, 991, 1094, 2223, 2381
Bsu15I	ATCGAT	1 cut(s)	1720
BsuRI	GGCC	9 cut(s)	33, 127, 1375, 1425, 1437, 2375, 2786, 2891, 2935
BsuTUI	ATCGAT	1 cut(s)	1720
BtgI	CCRYGG	2 cut(s)	464, 1370
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	9 cut(s)	235, 241, 563, 1366, 1396, 1776, 1777, 2225, 2803
BtsIMutI	CAGTG	9 cut(s)	57, 633, 801, 923, 993, 1435, 2501, 2769, 2920
BveI	ACCTGC	1 cut(s)	1679
Cac8I	GCNNGC	7 cut(s)	6, 921, 1824, 2271, 2300, 2405, 2581
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	1641
CfoI	GCGC	3 cut(s)	1263, 1828, 3087
Cfr10I	RCCGGY	1 cut(s)	2891
Cfr13I	GGNCC	6 cut(s)	452, 1648, 1784, 2034, 2373, 2933
ClaI	ATCGAT	1 cut(s)	1720
CseI	GACGC	3 cut(s)	303, 3116, 3130
CsiI	ACCWGGT	1 cut(s)	2358
Csp6I	GTAC	5 cut(s)	139, 984, 1679, 2920, 3021
CviQI	GTAC	5 cut(s)	139, 984, 1679, 2920, 3021
DraIII	CACNNNGTG	1 cut(s)	796
EaeI	YGGCCR	2 cut(s)	31, 2889
Eam1104I	CTCTTC	5 cut(s)	393, 712, 1268, 1484, 1940
EarI	CTCTTC	5 cut(s)	393, 712, 1268, 1484, 1940
Ecl136II	GAGCTC	1 cut(s)	1190
Eco130I	CCWWGG	4 cut(s)	1320, 1370, 2376, 2728
Eco147I	AGGCCT	1 cut(s)	2786
Eco24I	GRGCYC	1 cut(s)	1192
Eco31I	GGTCTC	3 cut(s)	896, 1486, 2738
Eco32I	GATATC	2 cut(s)	1753, 2286
Eco47I	GGWCC	4 cut(s)	452, 1648, 1784, 2034
Eco47III	AGCGCT	1 cut(s)	1827
Eco53kI	GAGCTC	1 cut(s)	1190
Eco57I	CTGAAG	3 cut(s)	374, 630, 2262
EcoICRI	GAGCTC	1 cut(s)	1190
EcoNI	CCTNNNNNAGG	1 cut(s)	1341
EcoO109I	RGGNCCY	2 cut(s)	452, 2034
EcoRI	GAATTC	2 cut(s)	511, 1289
EcoRII	CCWGG	7 cut(s)	159, 1375, 1399, 1410, 1495, 1779, 2358
EcoRV	GATATC	2 cut(s)	1753, 2286
EcoT14I	CCWWGG	4 cut(s)	1320, 1370, 2376, 2728
EcoT22I	ATGCAT	3 cut(s)	808, 1537, 2271
EcoT38I	GRGCYC	1 cut(s)	1192
ErhI	CCWWGG	4 cut(s)	1320, 1370, 2376, 2728
Esp3I	CGTCTC	1 cut(s)	390
FaqI	GGGAC	4 cut(s)	635, 1378, 2020, 2397
FauNDI	CATATG	2 cut(s)	2417, 2902
FbaI	TGATCA	2 cut(s)	738, 1594
Fnu4HI	GCNGC	6 cut(s)	470, 1435, 1460, 2097, 2616, 3120
FokI	GGATG	9 cut(s)	242, 248, 570, 1373, 1383, 1763, 1784, 2232, 2810
FriOI	GRGCYC	1 cut(s)	1192
Fsp4HI	GCNGC	6 cut(s)	470, 1435, 1460, 2097, 2616, 3120
FspAI	RTGCGCAY	1 cut(s)	3086
FspBI	CTAG	8 cut(s)	183, 282, 336, 524, 1143, 1185, 1389, 2580
FspI	TGCGCA	1 cut(s)	3086
GlaI	GCGC	3 cut(s)	1262, 1827, 3086
GluI	GCNGC	6 cut(s)	470, 1435, 1460, 2097, 2616, 3120
GsaI	CCCAGC	2 cut(s)	1655, 2754
GsuI	CTGGAG	5 cut(s)	948, 1542, 2067, 2471, 2643
HaeII	RGCGCY	1 cut(s)	1829
HaeIII	GGCC	9 cut(s)	33, 127, 1375, 1425, 1437, 2375, 2786, 2891, 2935
HapII	CCGG	2 cut(s)	2256, 2892
HgaI	GACGC	3 cut(s)	303, 3116, 3130
HhaI	GCGC	3 cut(s)	1263, 1828, 3087
Hin1I	GRCGYC	2 cut(s)	295, 3141
Hin6I	GCGC	3 cut(s)	1261, 1826, 3085
HinP1I	GCGC	3 cut(s)	1261, 1826, 3085
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	2444
HinfI	GANTC	9 cut(s)	22, 205, 344, 688, 1115, 1366, 1540, 1967, 2649
HpaII	CCGG	2 cut(s)	2256, 2892
HphI	GGTGA	3 cut(s)	65, 413, 782
Hpy166II	GTNNAC	5 cut(s)	217, 535, 1063, 2832, 2872
Hpy8I	GTNNAC	5 cut(s)	217, 535, 1063, 2832, 2872
Hpy99I	CGWCG	1 cut(s)	1589
HpyCH4IV	ACGT	2 cut(s)	1584, 1693
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 671, 1139, 1316, 1431, 1532, 2404, 3082, 3116
HpySE526I	ACGT	2 cut(s)	1584, 1693
Hsp92I	GRCGYC	2 cut(s)	295, 3141
HspAI	GCGC	3 cut(s)	1261, 1826, 3085
KpnI	GGTACC	1 cut(s)	2923
Ksp22I	TGATCA	2 cut(s)	738, 1594
LmnI	GCTCC	4 cut(s)	967, 1195, 1523, 2335
Lsp1109I	GCAGC	4 cut(s)	481, 1446, 2108, 3106
LweI	GCATC	9 cut(s)	576, 661, 793, 1323, 1516, 1785, 2256, 3096, 3131
MabI	ACCWGGT	1 cut(s)	2358
MaeI	CTAG	8 cut(s)	183, 282, 336, 524, 1143, 1185, 1389, 2580
MaeII	ACGT	2 cut(s)	1584, 1693
MaeIII	GTNAC	5 cut(s)	53, 1015, 1733, 2236, 2773
MbiI	CCGCTC	1 cut(s)	145
MfeI	CAATTG	1 cut(s)	3145
MflI	RGATCY	6 cut(s)	45, 460, 991, 1094, 2223, 2381
MhlI	GDGCHC	1 cut(s)	1192
MluCI	AATT	7 cut(s)	265, 357, 511, 1289, 1384, 2457, 3145
MlyI	GAGTC	4 cut(s)	214, 697, 1360, 2658
MmeI	TCCRAC	4 cut(s)	43, 1328, 1749, 2261
Mph1103I	ATGCAT	3 cut(s)	808, 1537, 2271
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	6 cut(s)	1226, 1305, 1623, 2252, 2262, 2319
MslI	CAYNNNNRTG	2 cut(s)	2105, 2274
MspA1I	CMGCKG	1 cut(s)	1553
MspI	CCGG	2 cut(s)	2256, 2892
MspR9I	CCNGG	8 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2257, 2360
MunI	CAATTG	1 cut(s)	3145
Mva1269I	GAATGC	2 cut(s)	1537, 2121
MvaI	CCWGG	7 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2360
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	9 cut(s)	10, 671, 1139, 1316, 1431, 1532, 2404, 3082, 3116
NciI	CCSGG	1 cut(s)	2257
NcoI	CCATGG	1 cut(s)	1370
NdeI	CATATG	2 cut(s)	2417, 2902
NheI	GCTAGC	1 cut(s)	2579
NmuCI	GTSAC	3 cut(s)	53, 2236, 2773
NsbI	TGCGCA	1 cut(s)	3086
NsiI	ATGCAT	3 cut(s)	808, 1537, 2271
NspI	RCATGY	5 cut(s)	1714, 2171, 2273, 2302, 2587
PaeI	GCATGC	2 cut(s)	2273, 2302
PagI	TCATGA	1 cut(s)	1641
PceI	AGGCCT	1 cut(s)	2786
PciI	ACATGT	1 cut(s)	2167
PcsI	WCGNNNNNNNCGW	1 cut(s)	3016
PctI	GAATGC	2 cut(s)	1537, 2121
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	5 cut(s)	22, 344, 1115, 1540, 1967
PflFI	GACNNNGTC	1 cut(s)	59
PflMI	CCANNNNNTGG	3 cut(s)	1376, 1658, 2942
PfoI	TCCNGGA	1 cut(s)	1399
PkrI	GCNGC	6 cut(s)	471, 1436, 1461, 2098, 2617, 3121
Ple19I	CGATCG	2 cut(s)	1720, 3033
PleI	GAGTC	4 cut(s)	213, 696, 1360, 2657
PpsI	GAGTC	4 cut(s)	213, 696, 1360, 2657
PpuMI	RGGWCCY	2 cut(s)	452, 2034
PscI	ACATGT	1 cut(s)	2167
PshAI	GACNNNNGTC	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	1305
PsiI	TTATAA	1 cut(s)	2174
Psp124BI	GAGCTC	1 cut(s)	1192
Psp1406I	AACGTT	1 cut(s)	1693
Psp5II	RGGWCCY	2 cut(s)	452, 2034
Psp6I	CCWGG	7 cut(s)	159, 1375, 1399, 1410, 1495, 1779, 2358
PspFI	CCCAGC	2 cut(s)	1651, 2750
PspGI	CCWGG	7 cut(s)	159, 1375, 1399, 1410, 1495, 1779, 2358
PspPI	GGNCC	6 cut(s)	452, 1648, 1784, 2034, 2373, 2933
PspPPI	RGGWCCY	2 cut(s)	452, 2034
PsrI	GAACNNNNNNTAC	2 cut(s)	1954, 1986
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	6 cut(s)	45, 460, 991, 1094, 2223, 2381
PsyI	GACNNNGTC	1 cut(s)	59
PvuI	CGATCG	2 cut(s)	1720, 3033
PvuII	CAGCTG	1 cut(s)	1553
RsaI	GTAC	5 cut(s)	140, 985, 1680, 2921, 3022
RsaNI	GTAC	5 cut(s)	139, 984, 1679, 2920, 3021
RseI	CAYNNNNRTG	2 cut(s)	2105, 2274
SacI	GAGCTC	1 cut(s)	1192
SaqAI	TTAA	6 cut(s)	1226, 1305, 1623, 2252, 2262, 2319
SatI	GCNGC	6 cut(s)	470, 1435, 1460, 2097, 2616, 3120
Sau96I	GGNCC	6 cut(s)	452, 1648, 1784, 2034, 2373, 2933
SchI	GAGTC	4 cut(s)	214, 697, 1360, 2658
ScrFI	CCNGG	8 cut(s)	161, 1377, 1401, 1412, 1497, 1781, 2257, 2360
SduI	GDGCHC	1 cut(s)	1192
SexAI	ACCWGGT	1 cut(s)	2358
SfaNI	GCATC	9 cut(s)	576, 661, 793, 1323, 1516, 1785, 2256, 3096, 3131
SinI	GGWCC	4 cut(s)	452, 1648, 1784, 2034
SmiMI	CAYNNNNRTG	2 cut(s)	2105, 2274
SmlI	CTYRAG	2 cut(s)	251, 2630
SmoI	CTYRAG	2 cut(s)	251, 2630
SphI	GCATGC	2 cut(s)	2273, 2302
Sse9I	AATT	7 cut(s)	265, 357, 511, 1289, 1384, 2457, 3145
SseBI	AGGCCT	1 cut(s)	2786
SsiI	CCGC	5 cut(s)	145, 170, 1133, 1434, 2616
SspMI	CTAG	8 cut(s)	183, 282, 336, 524, 1143, 1185, 1389, 2580
SstI	GAGCTC	1 cut(s)	1192
StuI	AGGCCT	1 cut(s)	2786
StyD4I	CCNGG	8 cut(s)	159, 1375, 1399, 1410, 1495, 1779, 2255, 2358
StyI	CCWWGG	4 cut(s)	1320, 1370, 2376, 2728
TaiI	ACGT	2 cut(s)	1587, 1696
TaqII	GACCGA	1 cut(s)	2213
TasI	AATT	7 cut(s)	265, 357, 511, 1289, 1384, 2457, 3145
TatI	WGTACW	2 cut(s)	983, 1678
TauI	GCSGC	2 cut(s)	1437, 2618
TfiI	GAWTC	5 cut(s)	22, 344, 1115, 1540, 1967
Tru1I	TTAA	6 cut(s)	1226, 1305, 1623, 2252, 2262, 2319
Tru9I	TTAA	6 cut(s)	1226, 1305, 1623, 2252, 2262, 2319
TscAI	CASTG	9 cut(s)	64, 640, 801, 930, 993, 1435, 2508, 2776, 2920
TseFI	GTSAC	3 cut(s)	53, 2236, 2773
TseI	GCWGC	4 cut(s)	469, 1459, 2096, 3119
Tsp45I	GTSAC	3 cut(s)	53, 2236, 2773
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	9 cut(s)	64, 640, 801, 930, 993, 1435, 2508, 2776, 2920
Tth111I	GACNNNGTC	1 cut(s)	59
Van91I	CCANNNNNTGG	3 cut(s)	1376, 1658, 2942
VpaK11BI	GGWCC	4 cut(s)	452, 1648, 1784, 2034
VspI	ATTAAT	1 cut(s)	1305
XagI	CCTNNNNNAGG	1 cut(s)	1341
XapI	RAATTY	2 cut(s)	511, 1289
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	5 cut(s)	1714, 2171, 2273, 2302, 2587
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1045, 1987
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	8 cut(s)	183, 282, 336, 524, 1143, 1185, 1389, 2580
Zsp2I	ATGCAT	3 cut(s)	808, 1537, 2271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.