Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006442

Physical Location & Seq

Genomic Coordinates Reverse (-)

58989914 .. 58996189

Gene Structure 6276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG404200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3219 bp

ATGGAAGCCAATGCCGGAATGGTGGCCGGCTCTTACAAGAGGAACGAGCTCGTTCGGATCCGTCACGATTCCGATAGCTCAGCGAAGCCCTTGAAGAATCTGAATGGCCAGATATGTCAGATCTGTGGTGACACTGTCGGACTTACAGCTACTGGCGATGTCTTTGTTGCCTGTAATGAGTGTGCCTTCCCAGTGTGTCGGCCTTGCTATGAGTATGAGCGGAAAGATGGGAACCAGGCTTGTCCGCAATGCAAGACTAGATATAAACGGCACAAAGGGAGTCCTCGCGTGGACGGAGATGAGGATGAGGATGATATTGATGATCTTGATAATGAGTTCAATTATGCACAAGGAACTAGCAACGCAAGACGCCAATGGCAAGGAGATGATCCTGACCTCTCATCTTCCTCTAGACATGAATCTGGACAGCCAATTCCCCTTCTCACAAATGGACAATCGGTATCTGGTGAGATACCCTGTGCTACTCCTGACAACCAATCTGTGCGAACTACATCAGGTCCTTTGGATCCACGGCAGCCAGTTCCCGTGAGAATAGTTGATCCTTCAAAGGACTTGAATTCCTATGGGCTAGGAAATGTTGACTGGAAAGAAAGGGTTGAAGGATGGAAACTCAAACAGGACAAAAATATGATGCAGATGACCAGTAGATACCCTGAAGGAAAGGGGGACATGGAAGGCACTGGTTCAAACGGAGAAGAACTCCAAATGGCTGATGATGCTCGACAACCTTTGAGTCGTATTGTTCCTATCTCTTCATCTCATCTGACACCTTATCGTGTTGTGATCATACTTCGGCTTATCATTCTGGGTTTCTTTTTGCAATACCGTGCAACTCACCCAGTGAAAGATGCATATCCATTATGGCTAATATCAGTTATCTGTGAGATTTGGTTTGCTTTTTCATGGCTTCTGGATCAGTTTCCAAAATGGTTTCCCATAAATCGTGAGACCTATCTTGACAGGCTCGCACTGAGGTATGATCGTGATGGGGAACCATCTCAGTTAGCTCCAGTAGATGTGTTTGTGAGTACAGTGGATCCCATGAAAGAACCTCCTCTGGTTACAGCCAACACAGTTTTGTCCATACTTTCTGTGGATTACCCTGTGGACAAAATCTCTTGCTATGTGTCAGATGATGGATCTGCAATGCTGACATTTGAAGCCCTTTCTGAAACTGCAGAGTTTGCTAGAAAGTGGGTGCCTTTCTGCAAGAAACACAACATTGAGCCTAGAGCTCCTGAGTTTTATTTTGCTCAAAAGATTGATTACTTAAAAGACAAGATACAGCCTTCTTTTGTAAAAGAGCGCAGAGCAATGAAGAGAGAGTATGAAGAATTCAAGGTAAGGATTAATGCCTTAGTTGCCAAGGCACAGAAGATGCCTGAAGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATTCTAGGGATCATCCAGGAATGATCCAGGTCTTCTTAGGCCACAGTGGCGGCCTTGATACAGATGGCAATGAGCTGCCTCGACTTGTTTATGTTTCTCGTGAGAAGAGACCTGGCTTCCAGCATCACAAAAAAGCTGGAGCAATGAATGCATTGATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGCTTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAACGTTTCGATGGGATTGACATGCACGATCGATATGCCAATCGTAACATTGTCTTCTTTGATATCAACTTGAAAGGGTTGGATGGCATCCAGGGTCCAGTCTATGTGGGAACTGGTTGCTGTTTCAACAGGCAAGCACTATATGGGTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCAAACATCATATTCAAGAGTTGTTGTGGTTCAAGAAAGAAGGGAAAGACCAGCAATAAGAAGTATATTGACAAGAAGAGGGCTGTCAAAAGAACTGAATCGACCATTCCCATTTTCAATATGGAAGACATTGAGGAGGGTGTTGAAGGTTATGATGATGAGAGGTCCCTTCTTATGTCTCAAAAGAACTTAGAGAAGCGTTTTGGTCAATCTCCAGTTTTTATTGCAGCCACCTTCATGGAACAAGGGGGCATTCCACCTACAACAAACCCTGCAACTCTTTTGAAGGAAGCCATACATGTTATAAGCTGTGGGTATGAAGACAAGACCGAATGGGGAAAAGAGATCGGATGGATCTATGGTTCTGTGACTGAAGATATTTTAACCGGGTTTAAGATGCATGCTCGTGGTTGGATATCAGTCTATTGCATGCCTCCCCGTCCAGCATTTAAGGGGTCTGCTCCCATCAATCTTTCTGATCGTTTGAACCAGGTGCTTCGGTGGGCCTTGGGATCTATTGAAATCTTGCTCAGCAGGCATTGTCCCATATGGTATGGCTACAATGGGAGAATGAAGCTTCTGGAGAGAATTGCATACATCAATACCATTGTTTATCCCCTCACATCTATACCTCTGATTGCATACTGTATGCTTCCTGCGTTTTGCCTTCTCACAAATAAGTTCATCATTCCTGAGATAAGCAACTTCGCTAGCATGTGGTTTATTCTTCTCTTTGTTTCGATTGCCGCAACTGGAGTTCTTGAGCTTAGGTGGAGTGGAGTCGGCATTGATGACTGGTGGAGAAACGAACAGTTCTGGGTCATCGGTGGAACATCTGCTCATCTTTTCGCTGTCTTCCAAGGTCTCCTAAAAGTTCTTGCCGGGATTGACACCAACTTCACTGTCACATCAAAGGCCTCTGATGAGGATGGGGATTTTGCAGAGCTGTATGTGTTCAAGTGGACAGCACTTCTCATTCCTCCCACCACAGTTCTCATTGTGAACTTGGTAGGTATCGTGGCTGGTGTTTCATATGCCATAAACAGTGGGTACCAATCTTGGGGGCCACTTTTTGGCAAACTGTTTTTCGCCATGTGGGTCGTTGCCCATCTATACCCATTCTTGAAGGGTCTGTTGGGTCGCCAAAATCGTACCCCTACGATTGTCATTGTATGGTCTATCCTCCTTGCTTCGATATTTTCCTTGCTATGGGTGCGCATCGACCCATTCACGTCAGACGCTTCAAAAGCTGCATCAAAAGGTCAATGTGGCGTCAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1072

Amino Acids

120.75

Weight (kDa)

6.34

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	29 - 105	4.1e-45	Zinc-binding RING-finger
Cellulose_synt	PF03552	345 - 1063	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	760 - 867	6.5e-08	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32410
fragaria_vesca	FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420
malus_domestica	MD08G1147200.v1.1 MD15G1123200.v1.1
prunus_persica	Prupe.1G478600_v2.0.a1 Prupe.1G478600_v2.0.a1
pyrus_communis	pycom08g12420 pycom15g11100
rosa_chinensis	RchiOBHm_Chr6g0298221
rosa_laevigata	RLG00000011525
rosa_multiflora	Rmu_sc0017507.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169850
rosa_rugosa	Rorug06G0279600 Rorug06G0279600
rosa_samantha	Rh6AG389900 Rh6BG398300 Rh6CG404200 Rh6DG390900
rosa_wichuraiana	Rw6G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2240
Acc16I	TGCGCA	1 cut(s)	3152
Acc36I	ACCTGC	1 cut(s)	1745
Acc65I	GGTACC	1 cut(s)	2985
AccB1I	GGYRCC	2 cut(s)	1219, 2985
AccB7I	CCANNNNNTGG	3 cut(s)	1442, 1724, 3008
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	1 cut(s)	288
AciI	CCGC	4 cut(s)	220, 245, 1500, 2682
AclI	AACGTT	1 cut(s)	1759
AcoI	YGGCCR	2 cut(s)	24, 106
AcsI	RAATTY	2 cut(s)	577, 1355
AcuI	CTGAAG	3 cut(s)	696, 1425, 2328
AcyI	GRCGYC	2 cut(s)	370, 3207
AdeI	CACNNNGTG	1 cut(s)	862
AfaI	GTAC	4 cut(s)	1051, 1746, 2987, 3088
AfiI	CCNNNNNNNGG	6 cut(s)	1409, 1442, 1724, 2995, 3008, 3144
AflIII	ACRYGT	1 cut(s)	2233
AjiI	CACGTC	1 cut(s)	3168
AjnI	CCWGG	7 cut(s)	234, 1441, 1465, 1476, 1561, 1845, 2424
AjuI	GAANNNNNNNTTGG	2 cut(s)	3053, 3085
AloI	GAACNNNNNNTCC	2 cut(s)	2281, 2313
Alw21I	GWGCWC	2 cut(s)	51, 1258
Alw26I	GTCTC	4 cut(s)	962, 1552, 2118, 2804
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	9 cut(s)	24, 106, 200, 1439, 1489, 1501, 2439, 2850, 2999
ApeKI	GCWGC	4 cut(s)	535, 1525, 2162, 3185
ApoI	RAATTY	2 cut(s)	577, 1355
AseI	ATTAAT	1 cut(s)	1371
Asp718I	GGTACC	1 cut(s)	2985
AspLEI	GCGC	2 cut(s)	1329, 3153
AspS9I	GGNCC	6 cut(s)	518, 1714, 1850, 2100, 2439, 2999
AsuC2I	CCSGG	2 cut(s)	2323, 2818
AsuHPI	GGTGA	3 cut(s)	140, 479, 848
AsuNHI	GCTAGC	1 cut(s)	2645
AvaII	GGWCC	4 cut(s)	518, 1714, 1850, 2100
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	3 cut(s)	57, 526, 1057
BanI	GGYRCC	2 cut(s)	1219, 2985
BanII	GRGCYC	2 cut(s)	51, 1258
BauI	CACGAG	2 cut(s)	1548, 2340
BbsI	GAAGAC	6 cut(s)	1474, 1739, 1801, 2067, 2262, 2782
Bbv12I	GWGCWC	2 cut(s)	51, 1258
BbvI	GCAGC	4 cut(s)	547, 1512, 2174, 3172
BceAI	ACGGC	2 cut(s)	284, 548
BcgI	CGANNNNNNTGC	2 cut(s)	1772, 1806
BciT130I	CCWGG	7 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2426
BclI	TGATCA	2 cut(s)	804, 1660
BcnI	CCSGG	2 cut(s)	2323, 2818
BcoDI	GTCTC	4 cut(s)	962, 1552, 2118, 2804
BfaI	CTAG	8 cut(s)	258, 357, 411, 590, 1209, 1251, 1455, 2646
BfmI	CTRYAG	1 cut(s)	1197
BfuAI	ACCTGC	1 cut(s)	1745
BglI	GCCNNNNNGGC	1 cut(s)	1497
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	6 cut(s)	536, 1501, 1526, 2163, 2682, 3186
BlpI	GCTNAGC	2 cut(s)	79, 2465
BlsI	GCNGC	6 cut(s)	537, 1502, 1527, 2164, 2683, 3187
Bme1390I	CCNGG	9 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2323, 2426, 2818
Bme18I	GGWCC	4 cut(s)	518, 1714, 1850, 2100
BmgBI	CACGTC	1 cut(s)	3168
BmgT120I	GGNCC	6 cut(s)	518, 1714, 1850, 2100, 2439, 2999
BmrFI	CCNGG	9 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2323, 2426, 2818
BmrI	ACTGGG	2 cut(s)	185, 854
BmsI	GCATC	9 cut(s)	642, 727, 859, 1389, 1582, 1851, 2322, 3162, 3197
BmtI	GCTAGC	1 cut(s)	2649
BmuI	ACTGGG	2 cut(s)	185, 854
BpiI	GAAGAC	6 cut(s)	1474, 1739, 1801, 2067, 2262, 2782
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
BpmI	CTGGAG	5 cut(s)	1014, 1608, 2133, 2537, 2709
Bpu10I	CCTNAGC	1 cut(s)	2702
Bpu1102I	GCTNAGC	2 cut(s)	79, 2465
BpuEI	CTTGAG	1 cut(s)	2717
BpuMI	CCSGG	2 cut(s)	2323, 2818
Bsa29I	ATCGAT	1 cut(s)	1786
BsaBI	GATNNNNATC	2 cut(s)	873, 1659
BsaHI	GRCGYC	2 cut(s)	370, 3207
BsaI	GGTCTC	3 cut(s)	962, 1552, 2804
BsaJI	CCNNGG	7 cut(s)	530, 1386, 1436, 1442, 1846, 2442, 2794
Bsc4I	CCNNNNNNNGG	6 cut(s)	1409, 1442, 1724, 2995, 3008, 3144
Bse118I	RCCGGY	1 cut(s)	26
Bse3DI	GCAATG	6 cut(s)	254, 1173, 1341, 1525, 1599, 1704
Bse8I	GATNNNNATC	2 cut(s)	873, 1659
BseBI	CCWGG	7 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2426
BseCI	ATCGAT	1 cut(s)	1786
BseDI	CCNNGG	7 cut(s)	530, 1386, 1436, 1442, 1846, 2442, 2794
BseGI	GGATG	9 cut(s)	310, 316, 629, 1432, 1462, 1842, 1843, 2291, 2869
BseJI	GATNNNNATC	2 cut(s)	873, 1659
BseLI	CCNNNNNNNGG	6 cut(s)	1409, 1442, 1724, 2995, 3008, 3144
BseMI	GCAATG	6 cut(s)	254, 1173, 1341, 1525, 1599, 1704
BseMII	CTCAG	7 cut(s)	93, 983, 1034, 1251, 1911, 2479, 2619
BseRI	GAGGAG	2 cut(s)	1065, 2084
BseXI	GCAGC	4 cut(s)	547, 1512, 2174, 3172
BseYI	CCCAGC	1 cut(s)	1717
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	1786
BshFI	GGCC	9 cut(s)	26, 108, 202, 1441, 1491, 1503, 2441, 2852, 3001
BshNI	GGYRCC	2 cut(s)	1219, 2985
BshVI	ATCGAT	1 cut(s)	1786
BsiEI	CGRYCG	1 cut(s)	1786
BsiHKAI	GWGCWC	2 cut(s)	51, 1258
BsiSI	CCGG	4 cut(s)	15, 27, 2322, 2817
BslFI	GGGAC	4 cut(s)	701, 1444, 2086, 2463
BslI	CCNNNNNNNGG	6 cut(s)	1409, 1442, 1724, 2995, 3008, 3144
BsmAI	GTCTC	4 cut(s)	962, 1552, 2118, 2804
BsmFI	GGGAC	4 cut(s)	701, 1444, 2086, 2463
BsmI	GAATGC	2 cut(s)	1603, 2187
BsnI	GGCC	9 cut(s)	26, 108, 202, 1441, 1491, 1503, 2441, 2852, 3001
Bso31I	GGTCTC	3 cut(s)	962, 1552, 2804
Bsp1286I	GDGCHC	2 cut(s)	51, 1258
Bsp1407I	TGTACA	1 cut(s)	1744
Bsp1720I	GCTNAGC	2 cut(s)	79, 2465
Bsp19I	CCATGG	1 cut(s)	1436
BspACI	CCGC	4 cut(s)	220, 245, 1500, 2682
BspANI	GGCC	9 cut(s)	26, 108, 202, 1441, 1491, 1503, 2441, 2852, 3001
BspCNI	CTCAG	7 cut(s)	92, 984, 1033, 1252, 1912, 2478, 2620
BspDI	ATCGAT	1 cut(s)	1786
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	1707
BspMAI	CTGCAG	1 cut(s)	1201
BspMI	ACCTGC	1 cut(s)	1745
BspOI	GCTAGC	1 cut(s)	2649
BspT107I	GGYRCC	2 cut(s)	1219, 2985
BspTNI	GGTCTC	3 cut(s)	962, 1552, 2804
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	6 cut(s)	254, 1173, 1341, 1525, 1599, 1704
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	1744
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	7 cut(s)	530, 1386, 1436, 1442, 1846, 2442, 2794
BssNI	GRCGYC	2 cut(s)	370, 3207
BssSI	CACGAG	2 cut(s)	1548, 2340
BssT1I	CCWWGG	4 cut(s)	1386, 1436, 2442, 2794
Bst2BI	CACGAG	2 cut(s)	1548, 2340
Bst2UI	CCWGG	7 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2426
Bst6I	CTCTTC	4 cut(s)	778, 1334, 1550, 2006
BstACI	GRCGYC	2 cut(s)	370, 3207
BstAPI	GCANNNNNTGC	2 cut(s)	1205, 1598
BstAUI	TGTACA	1 cut(s)	1744
BstC8I	GCNNGC	7 cut(s)	28, 987, 1890, 2337, 2366, 2471, 2647
BstDSI	CCRYGG	2 cut(s)	530, 1436
BstENI	CCTNNNNNAGG	1 cut(s)	1407
BstF5I	GGATG	9 cut(s)	310, 316, 629, 1432, 1462, 1842, 1843, 2291, 2869
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	1329, 3153
BstMAI	GTCTC	4 cut(s)	962, 1552, 2118, 2804
BstMCI	CGRYCG	1 cut(s)	1786
BstMWI	GCNNNNNNNGC	8 cut(s)	737, 1205, 1382, 1497, 1598, 2470, 3148, 3182
BstNI	CCWGG	7 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2426
BstNSI	RCATGY	5 cut(s)	1780, 2237, 2339, 2368, 2653
BstSCI	CCNGG	9 cut(s)	234, 1441, 1465, 1476, 1561, 1845, 2321, 2424, 2816
BstSFI	CTRYAG	1 cut(s)	1197
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	547, 1512, 2174, 3172
BstV2I	GAAGAC	6 cut(s)	1474, 1739, 1801, 2067, 2262, 2782
BstX2I	RGATCY	7 cut(s)	57, 120, 526, 1057, 1160, 2289, 2447
BstXI	CCANNNNNNTGG	1 cut(s)	2173
BstYI	RGATCY	7 cut(s)	57, 120, 526, 1057, 1160, 2289, 2447
Bsu15I	ATCGAT	1 cut(s)	1786
BsuRI	GGCC	9 cut(s)	26, 108, 202, 1441, 1491, 1503, 2441, 2852, 3001
BsuTUI	ATCGAT	1 cut(s)	1786
BtgI	CCRYGG	2 cut(s)	530, 1436
BtgZI	GCGATG	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	3168
BtsCI	GGATG	9 cut(s)	310, 316, 629, 1432, 1462, 1842, 1843, 2291, 2869
BtsIMutI	CAGTG	9 cut(s)	132, 198, 699, 867, 989, 1059, 1501, 2835, 2986
BveI	ACCTGC	1 cut(s)	1745
Cac8I	GCNNGC	7 cut(s)	28, 987, 1890, 2337, 2366, 2471, 2647
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	1707
CfoI	GCGC	2 cut(s)	1329, 3153
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	6 cut(s)	518, 1714, 1850, 2100, 2439, 2999
ClaI	ATCGAT	1 cut(s)	1786
CseI	GACGC	3 cut(s)	378, 3182, 3196
CsiI	ACCWGGT	1 cut(s)	2424
Csp6I	GTAC	4 cut(s)	1050, 1745, 2986, 3087
CviQI	GTAC	4 cut(s)	1050, 1745, 2986, 3087
DraIII	CACNNNGTG	1 cut(s)	862
EaeI	YGGCCR	2 cut(s)	24, 106
Eam1104I	CTCTTC	4 cut(s)	778, 1334, 1550, 2006
EarI	CTCTTC	4 cut(s)	778, 1334, 1550, 2006
Ecl136II	GAGCTC	2 cut(s)	49, 1256
Eco130I	CCWWGG	4 cut(s)	1386, 1436, 2442, 2794
Eco147I	AGGCCT	1 cut(s)	2852
Eco24I	GRGCYC	2 cut(s)	51, 1258
Eco31I	GGTCTC	3 cut(s)	962, 1552, 2804
Eco32I	GATATC	2 cut(s)	1819, 2352
Eco47I	GGWCC	4 cut(s)	518, 1714, 1850, 2100
Eco53kI	GAGCTC	2 cut(s)	49, 1256
Eco57I	CTGAAG	3 cut(s)	696, 1425, 2328
EcoICRI	GAGCTC	2 cut(s)	49, 1256
EcoNI	CCTNNNNNAGG	1 cut(s)	1407
EcoO109I	RGGNCCY	2 cut(s)	518, 2100
EcoRI	GAATTC	2 cut(s)	577, 1355
EcoRII	CCWGG	7 cut(s)	234, 1441, 1465, 1476, 1561, 1845, 2424
EcoRV	GATATC	2 cut(s)	1819, 2352
EcoT14I	CCWWGG	4 cut(s)	1386, 1436, 2442, 2794
EcoT22I	ATGCAT	3 cut(s)	874, 1603, 2337
EcoT38I	GRGCYC	2 cut(s)	51, 1258
ErhI	CCWWGG	4 cut(s)	1386, 1436, 2442, 2794
FaqI	GGGAC	4 cut(s)	701, 1444, 2086, 2463
FauNDI	CATATG	2 cut(s)	2483, 2968
FbaI	TGATCA	2 cut(s)	804, 1660
Fnu4HI	GCNGC	6 cut(s)	536, 1501, 1526, 2163, 2682, 3186
FokI	GGATG	9 cut(s)	317, 323, 636, 1439, 1449, 1829, 1850, 2298, 2876
FriOI	GRGCYC	2 cut(s)	51, 1258
Fsp4HI	GCNGC	6 cut(s)	536, 1501, 1526, 2163, 2682, 3186
FspAI	RTGCGCAY	1 cut(s)	3152
FspBI	CTAG	8 cut(s)	258, 357, 411, 590, 1209, 1251, 1455, 2646
FspI	TGCGCA	1 cut(s)	3152
GlaI	GCGC	2 cut(s)	1328, 3152
GluI	GCNGC	6 cut(s)	536, 1501, 1526, 2163, 2682, 3186
GsaI	CCCAGC	1 cut(s)	1721
GsuI	CTGGAG	5 cut(s)	1014, 1608, 2133, 2537, 2709
HaeIII	GGCC	9 cut(s)	26, 108, 202, 1441, 1491, 1503, 2441, 2852, 3001
HapII	CCGG	4 cut(s)	15, 27, 2322, 2817
HgaI	GACGC	3 cut(s)	378, 3182, 3196
HhaI	GCGC	2 cut(s)	1329, 3153
Hin1I	GRCGYC	2 cut(s)	370, 3207
Hin6I	GCGC	2 cut(s)	1327, 3151
HinP1I	GCGC	2 cut(s)	1327, 3151
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	2510
HinfI	GANTC	9 cut(s)	68, 97, 280, 419, 754, 1432, 1606, 2033, 2715
HpaII	CCGG	4 cut(s)	15, 27, 2322, 2817
HphI	GGTGA	3 cut(s)	140, 479, 848
Hpy166II	GTNNAC	5 cut(s)	292, 601, 1129, 2898, 2938
Hpy8I	GTNNAC	5 cut(s)	292, 601, 1129, 2898, 2938
Hpy99I	CGWCG	1 cut(s)	1655
HpyCH4IV	ACGT	3 cut(s)	1650, 1759, 3167
HpyF10VI	GCNNNNNNNGC	8 cut(s)	737, 1205, 1382, 1497, 1598, 2470, 3148, 3182
HpySE526I	ACGT	3 cut(s)	1650, 1759, 3167
Hsp92I	GRCGYC	2 cut(s)	370, 3207
HspAI	GCGC	2 cut(s)	1327, 3151
KpnI	GGTACC	1 cut(s)	2989
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	2 cut(s)	804, 1660
LmnI	GCTCC	4 cut(s)	1033, 1261, 1589, 2401
Lsp1109I	GCAGC	4 cut(s)	547, 1512, 2174, 3172
LweI	GCATC	9 cut(s)	642, 727, 859, 1389, 1582, 1851, 2322, 3162, 3197
MabI	ACCWGGT	1 cut(s)	2424
MaeI	CTAG	8 cut(s)	258, 357, 411, 590, 1209, 1251, 1455, 2646
MaeII	ACGT	3 cut(s)	1650, 1759, 3167
MaeIII	GTNAC	6 cut(s)	62, 128, 1081, 1799, 2302, 2839
MbiI	CCGCTC	1 cut(s)	220
MfeI	CAATTG	1 cut(s)	3211
MflI	RGATCY	7 cut(s)	57, 120, 526, 1057, 1160, 2289, 2447
MhlI	GDGCHC	2 cut(s)	51, 1258
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	7 cut(s)	340, 432, 577, 1355, 1450, 2523, 3211
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	4 cut(s)	289, 763, 1426, 2724
MmeI	TCCRAC	4 cut(s)	118, 1394, 1815, 2327
Mox20I	TGGCCA	1 cut(s)	108
Mph1103I	ATGCAT	3 cut(s)	874, 1603, 2337
MroNI	GCCGGC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	6 cut(s)	1292, 1371, 1689, 2318, 2328, 2385
MslI	CAYNNNNRTG	2 cut(s)	2171, 2340
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	1619
MspI	CCGG	4 cut(s)	15, 27, 2322, 2817
MspR9I	CCNGG	9 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2323, 2426, 2818
MunI	CAATTG	1 cut(s)	3211
Mva1269I	GAATGC	2 cut(s)	1603, 2187
MvaI	CCWGG	7 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2426
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	8 cut(s)	737, 1205, 1382, 1497, 1598, 2470, 3148, 3182
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	2 cut(s)	2323, 2818
NcoI	CCATGG	1 cut(s)	1436
NdeI	CATATG	2 cut(s)	2483, 2968
NgoMIV	GCCGGC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	2645
NmuCI	GTSAC	4 cut(s)	62, 128, 2302, 2839
NsbI	TGCGCA	1 cut(s)	3152
NsiI	ATGCAT	3 cut(s)	874, 1603, 2337
NspI	RCATGY	5 cut(s)	1780, 2237, 2339, 2368, 2653
PaeI	GCATGC	2 cut(s)	2339, 2368
PagI	TCATGA	1 cut(s)	1707
PceI	AGGCCT	1 cut(s)	2852
PciI	ACATGT	1 cut(s)	2233
PcsI	WCGNNNNNNNCGW	1 cut(s)	3082
PctI	GAATGC	2 cut(s)	1603, 2187
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	5 cut(s)	68, 97, 419, 1606, 2033
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	3 cut(s)	1442, 1724, 3008
PfoI	TCCNGGA	1 cut(s)	1465
PkrI	GCNGC	6 cut(s)	537, 1502, 1527, 2164, 2683, 3187
Ple19I	CGATCG	1 cut(s)	1786
PleI	GAGTC	4 cut(s)	288, 762, 1426, 2723
PpsI	GAGTC	4 cut(s)	288, 762, 1426, 2723
PpuMI	RGGWCCY	2 cut(s)	518, 2100
PscI	ACATGT	1 cut(s)	2233
PshBI	ATTAAT	1 cut(s)	1371
PsiI	TTATAA	1 cut(s)	2240
Psp124BI	GAGCTC	2 cut(s)	51, 1258
Psp1406I	AACGTT	1 cut(s)	1759
Psp5II	RGGWCCY	2 cut(s)	518, 2100
Psp6I	CCWGG	7 cut(s)	234, 1441, 1465, 1476, 1561, 1845, 2424
PspFI	CCCAGC	1 cut(s)	1717
PspGI	CCWGG	7 cut(s)	234, 1441, 1465, 1476, 1561, 1845, 2424
PspPI	GGNCC	6 cut(s)	518, 1714, 1850, 2100, 2439, 2999
PspPPI	RGGWCCY	2 cut(s)	518, 2100
PstI	CTGCAG	1 cut(s)	1201
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	7 cut(s)	57, 120, 526, 1057, 1160, 2289, 2447
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	1786
PvuII	CAGCTG	1 cut(s)	1619
RsaI	GTAC	4 cut(s)	1051, 1746, 2987, 3088
RsaNI	GTAC	4 cut(s)	1050, 1745, 2986, 3087
RseI	CAYNNNNRTG	2 cut(s)	2171, 2340
SacI	GAGCTC	2 cut(s)	51, 1258
SaqAI	TTAA	6 cut(s)	1292, 1371, 1689, 2318, 2328, 2385
SatI	GCNGC	6 cut(s)	536, 1501, 1526, 2163, 2682, 3186
Sau96I	GGNCC	6 cut(s)	518, 1714, 1850, 2100, 2439, 2999
SchI	GAGTC	4 cut(s)	289, 763, 1426, 2724
ScrFI	CCNGG	9 cut(s)	236, 1443, 1467, 1478, 1563, 1847, 2323, 2426, 2818
SduI	GDGCHC	2 cut(s)	51, 1258
SexAI	ACCWGGT	1 cut(s)	2424
SfaNI	GCATC	9 cut(s)	642, 727, 859, 1389, 1582, 1851, 2322, 3162, 3197
SfcI	CTRYAG	1 cut(s)	1197
SinI	GGWCC	4 cut(s)	518, 1714, 1850, 2100
SmiMI	CAYNNNNRTG	2 cut(s)	2171, 2340
SmlI	CTYRAG	1 cut(s)	2696
SmoI	CTYRAG	1 cut(s)	2696
SphI	GCATGC	2 cut(s)	2339, 2368
Sse9I	AATT	7 cut(s)	340, 432, 577, 1355, 1450, 2523, 3211
SseBI	AGGCCT	1 cut(s)	2852
SsiI	CCGC	4 cut(s)	220, 245, 1500, 2682
SspMI	CTAG	8 cut(s)	258, 357, 411, 590, 1209, 1251, 1455, 2646
SstI	GAGCTC	2 cut(s)	51, 1258
StuI	AGGCCT	1 cut(s)	2852
StyD4I	CCNGG	9 cut(s)	234, 1441, 1465, 1476, 1561, 1845, 2321, 2424, 2816
StyI	CCWWGG	4 cut(s)	1386, 1436, 2442, 2794
TaiI	ACGT	3 cut(s)	1653, 1762, 3170
TaqII	GACCGA	1 cut(s)	2279
TasI	AATT	7 cut(s)	340, 432, 577, 1355, 1450, 2523, 3211
TatI	WGTACW	2 cut(s)	1049, 1744
TauI	GCSGC	2 cut(s)	1503, 2684
TfiI	GAWTC	5 cut(s)	68, 97, 419, 1606, 2033
Tru1I	TTAA	6 cut(s)	1292, 1371, 1689, 2318, 2328, 2385
Tru9I	TTAA	6 cut(s)	1292, 1371, 1689, 2318, 2328, 2385
TscAI	CASTG	9 cut(s)	139, 198, 706, 867, 996, 1059, 1501, 2842, 2986
TseFI	GTSAC	4 cut(s)	62, 128, 2302, 2839
TseI	GCWGC	4 cut(s)	535, 1525, 2162, 3185
Tsp45I	GTSAC	4 cut(s)	62, 128, 2302, 2839
TspGWI	ACGGA	3 cut(s)	50, 309, 726
TspRI	CASTG	9 cut(s)	139, 198, 706, 867, 996, 1059, 1501, 2842, 2986
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	3 cut(s)	1442, 1724, 3008
VpaK11BI	GGWCC	4 cut(s)	518, 1714, 1850, 2100
VspI	ATTAAT	1 cut(s)	1371
XagI	CCTNNNNNAGG	1 cut(s)	1407
XapI	RAATTY	2 cut(s)	577, 1355
XbaI	TCTAGA	1 cut(s)	410
XceI	RCATGY	5 cut(s)	1780, 2237, 2339, 2368, 2653
XcmI	CCANNNNNNNNNTGG	3 cut(s)	16, 1111, 2053
XspI	CTAG	8 cut(s)	258, 357, 411, 590, 1209, 1251, 1455, 2646
Zsp2I	ATGCAT	3 cut(s)	874, 1603, 2337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.