Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006442

Physical Location & Seq

Genomic Coordinates Forward (+)

10859040 .. 10860128

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCCTCCCCGCCCAGCATTTAAGGGTTCTGCTCCCATCAATCTTTCTGATCGTTTGAACCAAGTTCTTCGATGGGCCTTGGGTTCCATTGAAATTCTGCTCAGCAGGCATTGTCCCATATGGTATGGCTACAATGGGAAGTTGAAGCTTTTGGAGAGACTTGCATACATCAATACCATCGTTTACCCTCTCACATCCATACCACTGATTGCCTACTGTTTGCTTCCTGCCTTTTGCCTGCTCACAGAAAAGTTTATCATTCCTGAGGTAACACCTAACTTCGCTAGCATGTGGTTCATTCTGCTCTTTGTTTCCATTATTGCAACCGGTATTCTTGAGCTAAGGTGGAGTGGAGTCAGTATTGATGACTGGTGGAGAAACGAACAGTTCTGGATCATTGGTGGAACATCAGCTCATCTATTCGCTGTCTTCCAAGGTCTCCTGAAAGTTCTTGCTGGGATTGATACCAACTTCACTGTCACGTCAAAGTCATCTGATGAGGATGGGGATTTTGCCGAGCTCTACGTGTTCAAATGGACATCACTTCTCATCCCTCCAACCACGGTTCTTCTTGTGAACATAGTAGGTATTGTGGCCGGTGTTTCATATGCTATAAATAGCGGTTACCAATCTTGGGGTCCACTTTTTGGCAAACTGTTTTTCGCCTTATGGGTGGTAGCACATCTGTATCCATTCTTGAAGGGTCTGTTGGGTCGGCAAAATCGTACCCCGACAATCGTCATCGTGTGGTCTATCCTTCTTGCTTCAATATTTTCCTTGCTATGGGTGCGCATCGACCCCTTCACTTCAGACAAAACAAACGCTGCAACAAACGGTCAATGTGGCATCAACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

286

Amino Acids

31.9

Weight (kDa)

8.57

Isoelectric Point (pI)

23.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 277	1.5e-151	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32410
fragaria_vesca	FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420 FvH4_2g29420
malus_domestica	MD08G1147200.v1.1 MD15G1123200.v1.1
prunus_persica	Prupe.1G478600_v2.0.a1 Prupe.1G478600_v2.0.a1
pyrus_communis	pycom08g12420 pycom15g11100
rosa_chinensis	RchiOBHm_Chr6g0298221
rosa_laevigata	RLG00000011525
rosa_multiflora	Rmu_sc0017507.1_g000003
rosa_roxburghii	Rroxscaffold_7G00169850
rosa_rugosa	Rorug06G0279600 Rorug06G0279600
rosa_samantha	Rh6AG389900 Rh6BG398300 Rh6CG404200 Rh6DG390900
rosa_wichuraiana	Rw6G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	791
AccB7I	CCANNNNNTGG	1 cut(s)	647
AciI	CCGC	2 cut(s)	10, 621
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	3 cut(s)	634, 647, 783
AflIII	ACRYGT	1 cut(s)	525
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	6 cut(s)	58, 92, 145, 532, 700, 768
AjiI	CACGTC	1 cut(s)	483
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
AluBI	AGCT	4 cut(s)	148, 340, 413, 520
AluI	AGCT	4 cut(s)	148, 340, 413, 520
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	151, 443
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	2 cut(s)	75, 594
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	1 cut(s)	93
AsiGI	ACCGGT	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	2 cut(s)	75, 638
AsuNHI	GCTAGC	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	638
AxyI	CCTNAGG	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	671, 704
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	811
BccI	CCATC	4 cut(s)	44, 66, 185, 497
BciVI	GTATCC	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	151, 443
BfaI	CTAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	699
BisI	GCNGC	1 cut(s)	825
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	826
Bme18I	GGWCC	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	75, 638
BmiI	GGNNCC	2 cut(s)	85, 639
BmsI	GCATC	1 cut(s)	801
BmtI	GCTAGC	1 cut(s)	288
BoxI	GACNNNNGTC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	78, 433, 561
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	3 cut(s)	634, 647, 783
Bse118I	RCCGGY	2 cut(s)	326, 596
Bse1I	ACTGG	1 cut(s)	374
Bse21I	CCTNAGG	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	78, 433, 561
BseGI	GGATG	3 cut(s)	194, 508, 549
BseLI	CCNNNNNNNGG	3 cut(s)	634, 647, 783
BseMII	CTCAG	2 cut(s)	115, 255
BseNI	ACTGG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	811
BseYI	CCCAGC	2 cut(s)	13, 455
BshFI	GGCC	2 cut(s)	77, 596
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	327, 597
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	634, 647, 783
BsmAI	GTCTC	2 cut(s)	151, 443
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	77, 596
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	49, 393
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	2 cut(s)	10, 621
BspANI	GGCC	2 cut(s)	77, 596
BspCNI	CTCAG	2 cut(s)	114, 256
BspLI	GGNNCC	2 cut(s)	85, 639
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	443
BsrFI	RCCGGY	2 cut(s)	326, 596
BsrI	ACTGG	1 cut(s)	374
BssAI	RCCGGY	2 cut(s)	326, 596
BssECI	CCNNGG	3 cut(s)	78, 433, 561
BssMI	GATC	2 cut(s)	49, 393
BssT1I	CCWWGG	2 cut(s)	78, 433
Bst4CI	ACNGT	7 cut(s)	218, 387, 478, 565, 657, 836, 854
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	107, 239, 286
BstDEI	CTNAG	3 cut(s)	101, 264, 341
BstDSI	CCRYGG	1 cut(s)	561
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	194, 508, 549
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	2 cut(s)	52, 396
BstMAI	GTCTC	2 cut(s)	151, 443
BstMBI	GATC	2 cut(s)	49, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 787
BstNSI	RCATGY	1 cut(s)	292
BstPAI	GACNNNNGTC	1 cut(s)	737
BstPI	GGTNACC	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	811
BstV2I	GAAGAC	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	77, 596
BtgI	CCRYGG	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	194, 508, 549
BtsIMutI	CAGTG	2 cut(s)	203, 474
Cac8I	GCNNGC	3 cut(s)	107, 239, 286
CfoI	GCGC	1 cut(s)	792
Cfr10I	RCCGGY	2 cut(s)	326, 596
Cfr13I	GGNCC	2 cut(s)	75, 638
Csp6I	GTAC	1 cut(s)	726
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	7 cut(s)	77, 129, 148, 340, 413, 520, 596
CviKI_1	RGCY	7 cut(s)	77, 129, 148, 340, 413, 520, 596
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	3 cut(s)	101, 264, 341
DpnI	GATC	2 cut(s)	51, 395
DpnII	GATC	2 cut(s)	49, 393
EaeI	YGGCCR	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	78, 433
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	623
EcoT14I	CCWWGG	2 cut(s)	78, 433
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	78, 433
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	288
FauI	CCCGC	1 cut(s)	17
FauNDI	CATATG	2 cut(s)	119, 607
Fnu4HI	GCNGC	1 cut(s)	825
FokI	GGATG	3 cut(s)	181, 515, 536
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	1 cut(s)	825
FspAI	RTGCGCAY	1 cut(s)	791
FspBI	CTAG	1 cut(s)	285
FspI	TGCGCA	1 cut(s)	791
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	1 cut(s)	825
GsaI	CCCAGC	2 cut(s)	17, 459
HaeIII	GGCC	2 cut(s)	77, 596
HapII	CCGG	2 cut(s)	327, 597
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	2 cut(s)	327, 597
Hpy166II	GTNNAC	3 cut(s)	184, 577, 641
Hpy188I	TCNGA	3 cut(s)	49, 496, 811
Hpy188III	TCNNGA	5 cut(s)	263, 335, 391, 442, 697
Hpy8I	GTNNAC	3 cut(s)	184, 577, 641
HpyAV	CCTTC	3 cut(s)	694, 767, 811
HpyCH4III	ACNGT	7 cut(s)	218, 387, 478, 565, 657, 836, 854
HpyCH4IV	ACGT	2 cut(s)	482, 525
HpyCH4V	TGCA	3 cut(s)	164, 323, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 787
HpyF3I	CTNAG	3 cut(s)	101, 264, 341
HpySE526I	ACGT	2 cut(s)	482, 525
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	49, 393
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	811
LweI	GCATC	1 cut(s)	801
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	2 cut(s)	482, 525
MaeIII	GTNAC	3 cut(s)	268, 478, 623
MalI	GATC	2 cut(s)	51, 395
MboI	GATC	2 cut(s)	49, 393
MboII	GAAGA	3 cut(s)	59, 421, 560
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	581
MnlI	CCTC	5 cut(s)	15, 198, 259, 493, 564
MseI	TTAA	1 cut(s)	21
MspI	CCGG	2 cut(s)	327, 597
MwoI	GCNNNNNNNGC	2 cut(s)	106, 787
NdeI	CATATG	2 cut(s)	119, 607
NdeII	GATC	2 cut(s)	49, 393
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	85, 639
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	478
NsbI	TGCGCA	1 cut(s)	791
NspI	RCATGY	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	721
PflMI	CCANNNNNTGG	1 cut(s)	647
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	826
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	526
PshAI	GACNNNNGTC	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	522
PspEI	GGTNACC	1 cut(s)	623
PspFI	CCCAGC	2 cut(s)	13, 455
PspN4I	GGNNCC	2 cut(s)	85, 639
PspPI	GGNCC	2 cut(s)	75, 638
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	825
Sau3AI	GATC	2 cut(s)	49, 393
Sau96I	GGNCC	2 cut(s)	75, 638
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	801
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	10, 621
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	78, 433
TaaI	ACNGT	7 cut(s)	218, 387, 478, 565, 657, 836, 854
TaiI	ACGT	2 cut(s)	485, 528
TaqI	TCGA	2 cut(s)	70, 795
TasI	AATT	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	2 cut(s)	210, 481
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	824
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	286, 594
TspRI	CASTG	2 cut(s)	210, 481
Van91I	CCANNNNNTGG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	1 cut(s)	93
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.