Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008683

Physical Location & Seq

Genomic Coordinates Reverse (-)

11770084 .. 11770974

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGGAAGCTGTAACCCTTGAGGACGCTCAAGAACCTTTTTACATTGCTGCAGATAAGTTCCAAGAAATGGTGGCTTTGGCATTGTTTAATTGGGGAAATGTCCACATGTCTAAGGCAAGGAAGCGAGTTTCCTTTCCTGAAGATGCTTCAAGGGAAAACATTATCGAACTGATCAAGTCTGGCTACGGCTGGTCAAATAAAGAGTACAGGAAGGCAGAGGCAAAGCTTTGTTGGTACTATGCTATTGGAAGCAAGAATGAGCTAGAAACAGAGCCTTCTTCGGAGGTGCATCAGCTTTATAACAAGGCTGAGGACAGCATGGACTGGGGCATGCTGATGTGGGAGGAGATGGAAGAGCGGCGTCTAAATGGACTCTCCAAAGAAGAAAAATATAACACCCAATTGCAGAAATTGGGTTTGGATGGCCTAATTCAAGAGGTATCTGCTGATGAAGCTGCAGAACATGCTGCAAATATGAAGTCACAGATATACCTCTTGTGCGGAACCTTGCTGTATGAGCCCGTCCTACAGCCGTCAAGCCGTCCTACCTTGTCCTACCTACACACTAGCCGTCCTACAGCCGTCAAGCCATCCTACAGCCGTCCTACCTTGTCCTACCTACACACTAGGACGGCTACCTTGTCCTCTACAGCCGTCCTACCTTGTCCTACCTACACACTAGGATGGCTACCTTGTCCTACCTACACATTTGTATCATGTATATATATCCTTGTAATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0008150 GO:0032886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

249

Amino Acids

28.3

Weight (kDa)

5.26

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25290 AT2G25290 AT2G25290 AT2G25290
fragaria_vesca	FvH4_2g28600 FvH4_2g28600 FvH4_2g28600
malus_domestica	MD15G1129300.v1.1
prunus_persica	Prupe.1G484900_v2.0.a1
pyrus_communis	pycom08g13150 pycom12646g00050 pycom15g11650
rosa_chinensis	RchiOBHm_Chr6g0297371
rosa_laevigata	RLG00000011607
rosa_multiflora	Rmu_sc0004989.1_g000001 Rmu_sc0012701.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170600
rosa_rugosa	Rorug06G0271100
rosa_samantha	Rh6AG382500 Rh6BG390600 Rh6CG395700 Rh6DG382700
rosa_wichuraiana	Rw6G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	361
AciI	CCGC	2 cut(s)	361, 504
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	2 cut(s)	209, 239
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	153, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	5 cut(s)	11, 229, 265, 298, 458
AluI	AGCT	5 cut(s)	11, 229, 265, 298, 458
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	50, 458, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
BaeI	ACNNNNGTAYC	2 cut(s)	699, 732
BanII	GRGCYC	1 cut(s)	525
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	37, 445, 457
BccI	CCATC	4 cut(s)	346, 419, 601, 681
BceAI	ACGGC	8 cut(s)	205, 520, 528, 558, 569, 588, 641, 651
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	4 cut(s)	266, 570, 630, 683
BfmI	CTRYAG	6 cut(s)	51, 459, 530, 579, 598, 651
BisI	GCNGC	4 cut(s)	51, 362, 459, 471
BlsI	GCNGC	4 cut(s)	52, 363, 460, 472
BmiI	GGNNCC	1 cut(s)	508
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	136, 301
BmuI	ACTGGG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	15, 41
BsaHI	GRCGYC	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	45
BseGI	GGATG	3 cut(s)	430, 593, 692
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	37, 445, 457
BshFI	GGCC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	361, 504
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	508
BspMAI	CTGCAG	2 cut(s)	55, 463
BspQI	GCTCTTC	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	114, 312
BstF5I	GGATG	3 cut(s)	430, 593, 692
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 467, 520
BstNSI	RCATGY	3 cut(s)	112, 337, 470
BstSFI	CTRYAG	6 cut(s)	51, 459, 530, 579, 598, 651
BstV1I	GCAGC	3 cut(s)	37, 445, 457
BsuRI	GGCC	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	430, 593, 692
Cac8I	GCNNGC	1 cut(s)	335
CseI	GACGC	2 cut(s)	35, 353
Csp6I	GTAC	2 cut(s)	208, 238
CviAII	CATG	5 cut(s)	109, 322, 334, 467, 720
CviQI	GTAC	2 cut(s)	208, 238
DdeI	CTNAG	2 cut(s)	114, 312
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	525
FaeI	CATG	5 cut(s)	112, 325, 337, 470, 723
FatI	CATG	5 cut(s)	108, 321, 333, 466, 719
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	51, 362, 459, 471
FokI	GGATG	3 cut(s)	437, 580, 699
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	4 cut(s)	51, 362, 459, 471
FspBI	CTAG	4 cut(s)	266, 570, 630, 683
GluI	GCNGC	4 cut(s)	51, 362, 459, 471
HaeIII	GGCC	1 cut(s)	429
HgaI	GACGC	2 cut(s)	35, 353
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	5 cut(s)	112, 325, 337, 470, 723
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	3 cut(s)	32, 140, 437
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	208, 288
HpyCH4V	TGCA	5 cut(s)	53, 292, 409, 461, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 467, 520
HpyF3I	CTNAG	2 cut(s)	114, 312
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	5 cut(s)	112, 325, 337, 470, 723
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LguI	GCTCTTC	1 cut(s)	351
LpnPI	CCDG	5 cut(s)	153, 168, 178, 196, 313
Lsp1109I	GCAGC	3 cut(s)	37, 445, 457
LweI	GCATC	2 cut(s)	136, 301
MaeI	CTAG	4 cut(s)	266, 570, 630, 683
MaeIII	GTNAC	2 cut(s)	13, 483
MalI	GATC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	1 cut(s)	174
MboII	GAAGA	4 cut(s)	155, 273, 368, 398
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	4 cut(s)	91, 404, 413, 432
MlyI	GAGTC	1 cut(s)	369
MnlI	CCTC	8 cut(s)	16, 214, 280, 307, 340, 433, 506, 658
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	338, 685
MunI	CAATTG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	455, 467, 520
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	5 cut(s)	112, 325, 337, 470, 723
NlaIV	GGNNCC	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	483
NspI	RCATGY	3 cut(s)	112, 337, 470
PaeI	GCATGC	1 cut(s)	337
PciI	ACATGT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	52, 363, 460, 472
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PscI	ACATGT	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	508
PstI	CTGCAG	2 cut(s)	55, 463
RsaI	GTAC	2 cut(s)	209, 239
RsaNI	GTAC	2 cut(s)	208, 238
RseI	CAYNNNNRTG	2 cut(s)	338, 685
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	4 cut(s)	51, 362, 459, 471
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	136, 301
SfcI	CTRYAG	6 cut(s)	51, 459, 530, 579, 598, 651
SmiMI	CAYNNNNRTG	2 cut(s)	338, 685
SmlI	CTYRAG	2 cut(s)	20, 30
SmoI	CTYRAG	2 cut(s)	20, 30
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	4 cut(s)	91, 404, 413, 432
SsiI	CCGC	2 cut(s)	361, 504
SspMI	CTAG	4 cut(s)	266, 570, 630, 683
TaqI	TCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	91, 404, 413, 432
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	3 cut(s)	50, 458, 470
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	2 cut(s)	468, 494
Van91I	CCANNNNNTGG	1 cut(s)	70
XceI	RCATGY	3 cut(s)	112, 337, 470
XspI	CTAG	4 cut(s)	266, 570, 630, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.