Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Reverse (-)

13689231 .. 13691153

Gene Structure 1923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTTCCGAGAAGGTTGAGACTGTTATAGCCGGAAACTATGTCGAAATGGAAAGGGAAGAGAGTGATGTGAAGACAAGTGCTAAGAGCAAGCTATCAACATTTCTTTGGCATGGTGGCTCAGCATATGATGCATGGTTTAGCTCCGCTTCTAACCAGGTTGCTCAAGTGCTTCTCACACTGCCGTACTCGTTTTCCCAACTGGGTTTGTTATCTGGAATACTATTTCAGCTTTTTTATGGATTGATGGGAAGCTGGACTGCTTACCTCATCAGTCTACTATATGTTGAGTACAGAACTCGGAAGGAGAGAGAAAAGGTGGATTTTAGGAACCATGTAATTCAGTGGTTTGAAGTTCTTGATGGGCTCTTGGGAAAACACTGGAGGAATTTAGGCCTCTTTTTTAACTGTACTTTTCTACTCTTTGGGTCTGTAATTCAGTTAATTGCCTGTGCAAGTAACATCTACTATATAAACGACAATCTCGACAAGAGAACTTGGACTTACATCTTTGGAGCTTGCTGTGCTACAACTGTCTTCATCCCCTCATTCCATAATTACAGAATTTGGTCATTTTTGGGCCTTATTATGACTACTTACACTGCTTGGTATCTCACCATTGCTTCCCTTATCCACGGACAGGTTGAGGGAGTGAAGCACTCTGGTCCAAGCACAATGGTTCTCTACTTCACTGGGGCTACTAACATTCTCTACACATTTGGTGGACATGCTGTTACAGTGGAGATTATGCATGCAATGTGGAAGCCACAGAAATTCAAGTTAATATACTTGATGGCAACACTGTATGTGCTGACCTTAACCCTACCATCTGCGTCTGCTGTGTACTGGGCATTCGGGGACAGTCTCTTGACTCATTCCAATGCCCTAGCCATGCTTCCAAAGACTAGATTTAGAGACACTGCAGTAGTCCTAATGCTCATTCATCAGTTTATCACGTTTGGATTTGCTTGCACTCCTTTGTACTTTGTGTGGGAGAAATTCATTCAGATGCATGAGACCAAGAGCATGGTGAAGAGGGCACTGGCAAGGCTCCCAGTGGTGATCCATCAAAAACGATATGGTTCCTTGCCATCATATTCCCATTCTTTGGGCCCATCAACTCAACTGATCGATCTCTTCTTGTCAGCTTTACTGTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

388

Amino Acids

44.06

Weight (kDa)

9.01

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	38 - 355	7.8e-65	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1108
AccI	GTMKAC	2 cut(s)	277, 1157
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	1057
AcsI	RAATTY	4 cut(s)	388, 564, 773, 998
AfaI	GTAC	5 cut(s)	188, 293, 412, 845, 983
AfiI	CCNNNNNNNGG	2 cut(s)	640, 1108
AgsI	TTSAA	2 cut(s)	353, 778
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	6 cut(s)	94, 144, 232, 255, 518, 1148
AluI	AGCT	6 cut(s)	94, 144, 232, 255, 518, 1148
Alw26I	GTCTC	4 cut(s)	14, 869, 909, 1010
AlwI	GGATC	1 cut(s)	1057
AoxI	GGCC	3 cut(s)	394, 580, 1111
ApaI	GGGCCC	1 cut(s)	1115
ApoI	RAATTY	4 cut(s)	388, 564, 773, 998
AspS9I	GGNCC	4 cut(s)	580, 665, 1111, 1112
AsuHPI	GGTGA	3 cut(s)	607, 1042, 1072
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	2 cut(s)	1042, 1115
BanII	GRGCYC	2 cut(s)	369, 1115
BbsI	GAAGAC	2 cut(s)	80, 529
BccI	CCATC	7 cut(s)	241, 356, 787, 835, 1074, 1099, 1123
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	4 cut(s)	14, 869, 909, 1010
BfaI	CTAG	2 cut(s)	887, 906
BfmI	CTRYAG	1 cut(s)	921
BlpI	GCTNAGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	4 cut(s)	580, 665, 1111, 1112
BmiI	GGNNCC	4 cut(s)	332, 1052, 1084, 1113
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	4 cut(s)	212, 702, 856, 1049
BmsI	GCATC	2 cut(s)	121, 999
BmuI	ACTGGG	4 cut(s)	212, 702, 856, 1049
BpiI	GAAGAC	2 cut(s)	80, 529
BpmI	CTGGAG	1 cut(s)	403
Bpu1102I	GCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	1131
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 1108
Bse1I	ACTGG	6 cut(s)	207, 386, 697, 851, 1047, 1055
Bse3DI	GCAATG	2 cut(s)	618, 762
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	1131
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	640, 1108
BseMI	GCAATG	2 cut(s)	618, 762
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	6 cut(s)	207, 386, 697, 851, 1047, 1055
BseSI	GKGCMC	2 cut(s)	1042, 1115
BshFI	GGCC	3 cut(s)	396, 582, 1113
BshVI	ATCGAT	1 cut(s)	1131
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	640, 1108
BsmAI	GTCTC	4 cut(s)	14, 869, 909, 1010
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	851
BsnI	GGCC	3 cut(s)	396, 582, 1113
Bso31I	GGTCTC	1 cut(s)	1010
Bsp120I	GGGCCC	1 cut(s)	1111
Bsp1286I	GDGCHC	3 cut(s)	369, 1042, 1115
Bsp143I	GATC	3 cut(s)	1062, 1128, 1132
Bsp1720I	GCTNAGC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	396, 582, 1113
BspCNI	CTCAG	1 cut(s)	134
BspDI	ATCGAT	1 cut(s)	1131
BspLI	GGNNCC	4 cut(s)	332, 1052, 1084, 1113
BspMAI	CTGCAG	1 cut(s)	925
BspPI	GGATC	1 cut(s)	1057
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	618, 762
BsrI	ACTGG	6 cut(s)	207, 386, 697, 851, 1047, 1055
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	3 cut(s)	1062, 1128, 1132
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	7 cut(s)	25, 410, 535, 739, 804, 863, 1155
Bst6I	CTCTTC	3 cut(s)	54, 1028, 1142
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	4 cut(s)	92, 520, 753, 970
BstDEI	CTNAG	2 cut(s)	84, 121
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	1 cut(s)	540
BstKTI	GATC	3 cut(s)	1065, 1131, 1135
BstMAI	GTCTC	4 cut(s)	14, 869, 909, 1010
BstMBI	GATC	3 cut(s)	1062, 1128, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 524
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	2 cut(s)	731, 755
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	2 cut(s)	1042, 1115
BstV2I	GAAGAC	2 cut(s)	80, 529
BstXI	CCANNNNNNTGG	1 cut(s)	1027
Bsu15I	ATCGAT	1 cut(s)	1131
BsuRI	GGCC	3 cut(s)	396, 582, 1113
BsuTUI	ATCGAT	1 cut(s)	1131
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	540
BtsI	GCAGTG	3 cut(s)	179, 600, 918
Cac8I	GCNNGC	4 cut(s)	92, 520, 753, 970
Cfr13I	GGNCC	4 cut(s)	580, 665, 1111, 1112
ClaI	ATCGAT	1 cut(s)	1131
CseI	GACGC	1 cut(s)	822
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	5 cut(s)	187, 292, 411, 844, 982
CviAII	CATG	8 cut(s)	113, 135, 335, 728, 752, 892, 1013, 1027
CviQI	GTAC	5 cut(s)	187, 292, 411, 844, 982
DdeI	CTNAG	2 cut(s)	84, 121
DpnI	GATC	3 cut(s)	1064, 1130, 1134
DpnII	GATC	3 cut(s)	1062, 1128, 1132
Eam1104I	CTCTTC	3 cut(s)	54, 1028, 1142
EarI	CTCTTC	3 cut(s)	54, 1028, 1142
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	369, 1115
Eco31I	GGTCTC	1 cut(s)	1010
Eco47I	GGWCC	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	3 cut(s)	136, 753, 1014
EcoT38I	GRGCYC	2 cut(s)	369, 1115
FaeI	CATG	8 cut(s)	116, 138, 338, 731, 755, 895, 1016, 1030
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	8 cut(s)	112, 134, 334, 727, 751, 891, 1012, 1026
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	2 cut(s)	277, 1157
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	2 cut(s)	369, 1115
FspBI	CTAG	2 cut(s)	887, 906
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	3 cut(s)	396, 582, 1113
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	822
Hin1II	CATG	8 cut(s)	116, 138, 338, 731, 755, 895, 1016, 1030
HinfI	GANTC	1 cut(s)	871
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	3 cut(s)	607, 1042, 1072
Hpy166II	GTNNAC	4 cut(s)	278, 725, 844, 1158
Hpy188I	TCNGA	3 cut(s)	10, 303, 1008
Hpy188III	TCNNGA	4 cut(s)	216, 359, 485, 868
Hpy8I	GTNNAC	4 cut(s)	278, 725, 844, 1158
HpyAV	CCTTC	2 cut(s)	7, 298
HpyCH4III	ACNGT	7 cut(s)	25, 410, 535, 739, 804, 863, 1155
HpyCH4IV	ACGT	1 cut(s)	956
HpyCH4V	TGCA	7 cut(s)	134, 455, 751, 755, 923, 972, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 524
HpyF3I	CTNAG	2 cut(s)	84, 121
HpySE526I	ACGT	1 cut(s)	956
Hsp92II	CATG	8 cut(s)	116, 138, 338, 731, 755, 895, 1016, 1030
Kzo9I	GATC	3 cut(s)	1062, 1128, 1132
LmnI	GCTCC	3 cut(s)	149, 515, 1056
LweI	GCATC	2 cut(s)	121, 999
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	2 cut(s)	887, 906
MaeII	ACGT	1 cut(s)	956
MaeIII	GTNAC	2 cut(s)	458, 733
MalI	GATC	3 cut(s)	1064, 1130, 1134
MboI	GATC	3 cut(s)	1062, 1128, 1132
MboII	GAAGA	5 cut(s)	71, 85, 529, 1045, 1129
MhlI	GDGCHC	3 cut(s)	369, 1042, 1115
MluCI	AATT	8 cut(s)	339, 388, 435, 444, 556, 564, 773, 998
MlyI	GAGTC	1 cut(s)	865
MnlI	CCTC	6 cut(s)	278, 378, 407, 556, 640, 1029
Mph1103I	ATGCAT	3 cut(s)	136, 753, 1014
MseI	TTAA	4 cut(s)	405, 443, 782, 818
MslI	CAYNNNNRTG	2 cut(s)	879, 1007
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	131, 524
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	3 cut(s)	1062, 1128, 1132
NlaIII	CATG	8 cut(s)	116, 138, 338, 731, 755, 895, 1016, 1030
NlaIV	GGNNCC	4 cut(s)	332, 1052, 1084, 1113
NsiI	ATGCAT	3 cut(s)	136, 753, 1014
NspI	RCATGY	2 cut(s)	731, 755
PaeI	GCATGC	1 cut(s)	755
PceI	AGGCCT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	1 cut(s)	851
PflMI	CCANNNNNTGG	1 cut(s)	1108
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	332, 1052, 1084, 1113
PspOMI	GGGCCC	1 cut(s)	1111
PspPI	GGNCC	4 cut(s)	580, 665, 1111, 1112
PstI	CTGCAG	1 cut(s)	925
RsaI	GTAC	5 cut(s)	188, 293, 412, 845, 983
RsaNI	GTAC	5 cut(s)	187, 292, 411, 844, 982
RseI	CAYNNNNRTG	2 cut(s)	879, 1007
SaqAI	TTAA	4 cut(s)	405, 443, 782, 818
Sau3AI	GATC	3 cut(s)	1062, 1128, 1132
Sau96I	GGNCC	4 cut(s)	580, 665, 1111, 1112
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	3 cut(s)	369, 1042, 1115
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	121, 999
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	879, 1007
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	8 cut(s)	339, 388, 435, 444, 556, 564, 773, 998
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	2 cut(s)	887, 906
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	7 cut(s)	25, 410, 535, 739, 804, 863, 1155
TaiI	ACGT	1 cut(s)	959
TaqI	TCGA	3 cut(s)	45, 486, 1131
TasI	AATT	8 cut(s)	339, 388, 435, 444, 556, 564, 773, 998
TatI	WGTACW	4 cut(s)	291, 410, 843, 981
Tru1I	TTAA	4 cut(s)	405, 443, 782, 818
Tru9I	TTAA	4 cut(s)	405, 443, 782, 818
TspDTI	ATGAA	3 cut(s)	529, 932, 991
TspGWI	ACGGA	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	1108
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	4 cut(s)	388, 564, 773, 998
XceI	RCATGY	2 cut(s)	731, 755
XmiI	GTMKAC	2 cut(s)	277, 1157
XspI	CTAG	2 cut(s)	887, 906
Zsp2I	ATGCAT	3 cut(s)	136, 753, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.