pycom08g15450
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013685
Physical Location & Seq
Forward (+)
15165373 .. 15166655
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1161 bp
ATGATAACCCTAATTAACAAAAAGCTAATCTCACTCTCACTAACCTCTGTCGGGCTTCACAAATCCCCTCTCTGCAACTCAATCTCTCTCTTTTTCTACTCTTCGTCCCGACCCAAAAAGTGGAAATCAAAGCCCAAAATTGCAGTAGCTGAATACTTAATCAGCCAGCACCAGTTTTCCCCAGAAGCCGCTCTGAAAGCCGCATCAACAGTCGCTTATCTGAAAAGCCCTGCTGAATCCAGTTCGGTGATTTCGTTTCTCAGGGAAAGCGGCTTCTCGAAAACCCATCTGGAAAATGTGGTTAAAAGGGTCCCCAGGATTCTTACTGCCAATCCTGACATTGTCCTCAAACCCAAATTCAAGGTTTTCCAGGACTCGGGCTTTTCGGATTCCGACATTGTTGATATTGTGTCCTCTGACCCCTGGATTCTGTTGCGAAGTGCCGCTAATCAGCTTGGCCCTGCTCTGTTGGTGCTGAAGAACATTCTCGGATCGAATGCTAGTGTGCTCAAGGTTTTAAAGTTGTCTGGGGGTGTTCTTAAATATGACTTGGAGAAGACATTGATGTCCAATGTTGAGGTCTTACAGAGTTATGGTATAAAATCGTCACAAATTATCAAATACATTTTTCATTTTCCGAGATTTTTTGTGCATAAGCCGGAGAGCATTGTGGATGTTATTAAAAGGGTTGACGAGATGGGTTTCGATATGAAGTCCAAGAGGTTCCTCTCAGCAATTCGGATCGATGACTTCGCTCACTGTCGAGACATGGGAACGGAAGGTGAAGCTTTTCAAGAGAGGGTACCCCAGGTGTTTGGAGTATCTGAGAAGAAGATTGAGGAGGTTATAGAGGTGCTTCTCAGCACTGGCAAGTATGATATCTCGTTTATAGTTAATCATCCAGAATTGCTTATTTATAGTGTCAAGCACAGGCTGAAACCACGACTACAAGTTATGGAGATCCTTGAAAAGAAAAAACTACTTGGGAAAACACCTACTTTGACCACAATCTGCAAGTACTCTGAACAGAAGTTTGCTGAATTATATGTTGTTCCTTATACAAATGAACTTGAAGGAAGAGTATTTTTTTTTGTGCACTTCTGTTTCTTTCTTTCATTCTTTGTCATAACTGCTTCGTTTATGAAATTCTTTGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

387

Amino Acids

43.82

Weight (kDa)

9.41

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 84 - 238 3.9e-17 mTERF
mTERF PF02536 265 - 346 2.8e-09 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis pycom08g15450
rosa_chinensis RchiOBHm_Chr7g0239481
rosa_laevigata RLG00000000754
rosa_multiflora Rmu_sc0003379.1_g000006
rosa_roxburghii Rroxscaffold_3G00220900
rosa_rugosa Rorug07G0328200
rosa_samantha Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana Rw7G040360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 565
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 191
AciI CCGC 4 cut(s) 189, 201, 270, 444
AclWI GGATC 3 cut(s) 499, 749, 955
AcsI RAATTY 2 cut(s) 356, 1145
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 2 cut(s) 804, 1019
AfiI CCNNNNNNNGG 3 cut(s) 51, 120, 376
AgsI TTSAA 5 cut(s) 361, 794, 968, 1073, 1154
AjnI CCWGG 4 cut(s) 314, 369, 422, 807
AluBI AGCT 4 cut(s) 25, 149, 454, 788
AluI AGCT 4 cut(s) 25, 149, 454, 788
Alw21I GWGCWC 2 cut(s) 510, 1098
Alw26I GTCTC 1 cut(s) 759
Alw44I GTGCAC 1 cut(s) 1094
AlwI GGATC 3 cut(s) 499, 749, 955
AlwNI CAGNNNCTG 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 1 cut(s) 457
ApaLI GTGCAC 1 cut(s) 1094
ApoI RAATTY 2 cut(s) 356, 1145
Asp700I GAANNNNTTC 1 cut(s) 789
Asp718I GGTACC 1 cut(s) 802
AspS9I GGNCC 2 cut(s) 310, 458
AsuHPI GGTGA 2 cut(s) 259, 794
AvaI CYCGRG 1 cut(s) 376
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 1098
BanI GGYRCC 1 cut(s) 802
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 2 cut(s) 510, 1098
BccI CCATC 2 cut(s) 294, 691
BciT130I CCWGG 4 cut(s) 316, 371, 424, 809
BcoDI GTCTC 1 cut(s) 759
BfaI CTAG 1 cut(s) 501
BisI GCNGC 4 cut(s) 189, 201, 271, 444
BlsI GCNGC 4 cut(s) 190, 202, 272, 445
BmcAI AGTACT 1 cut(s) 1019
Bme1390I CCNGG 4 cut(s) 316, 371, 424, 809
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 310, 458
BmiI GGNNCC 4 cut(s) 311, 312, 725, 804
BmrFI CCNGG 4 cut(s) 316, 371, 424, 809
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 744
BsaJI CCNNGG 3 cut(s) 314, 422, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 120, 376
Bse1I ACTGG 3 cut(s) 172, 240, 871
BseBI CCWGG 4 cut(s) 316, 371, 424, 809
BseCI ATCGAT 1 cut(s) 744
BseDI CCNNGG 3 cut(s) 314, 422, 807
BseGI GGATG 2 cut(s) 679, 898
BseLI CCNNNNNNNGG 3 cut(s) 51, 120, 376
BseMII CTCAG 4 cut(s) 274, 744, 816, 874
BseNI ACTGG 3 cut(s) 172, 240, 871
BseRI GAGGAG 1 cut(s) 854
BseSI GKGCMC 1 cut(s) 1098
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 1 cut(s) 802
BshVI ATCGAT 1 cut(s) 744
BsiHKAI GWGCWC 2 cut(s) 510, 1098
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 2 cut(s) 91, 296
BslI CCNNNNNNNGG 3 cut(s) 51, 120, 376
BsmAI GTCTC 1 cut(s) 759
BsmFI GGGAC 2 cut(s) 91, 296
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 1 cut(s) 459
BsoBI CYCGRG 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 510, 1098
Bsp143I GATC 3 cut(s) 491, 741, 960
BspACI CCGC 4 cut(s) 189, 201, 270, 444
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 4 cut(s) 273, 743, 817, 873
BspDI ATCGAT 1 cut(s) 744
BspLI GGNNCC 4 cut(s) 311, 312, 725, 804
BspPI GGATC 3 cut(s) 499, 749, 955
BspT107I GGYRCC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 191
BsrI ACTGG 3 cut(s) 172, 240, 871
BssECI CCNNGG 3 cut(s) 314, 422, 807
BssMI GATC 3 cut(s) 491, 741, 960
Bst2UI CCWGG 4 cut(s) 316, 371, 424, 809
Bst4CI ACNGT 2 cut(s) 211, 761
Bst6I CTCTTC 2 cut(s) 106, 1072
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 4 cut(s) 260, 730, 825, 860
BstF5I GGATG 2 cut(s) 679, 898
BstKTI GATC 3 cut(s) 494, 744, 963
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 3 cut(s) 491, 741, 960
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 4 cut(s) 316, 371, 424, 809
BstSCI CCNGG 4 cut(s) 314, 369, 422, 807
BstSLI GKGCMC 1 cut(s) 1098
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 1 cut(s) 960
BstXI CCANNNNNNTGG 1 cut(s) 815
BstYI RGATCY 1 cut(s) 960
Bsu15I ATCGAT 1 cut(s) 744
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 744
BtsCI GGATG 2 cut(s) 679, 898
BtsIMutI CAGTG 2 cut(s) 757, 864
Cac8I GCNNGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 310, 458
ClaI ATCGAT 1 cut(s) 744
Csp6I GTAC 2 cut(s) 803, 1018
CviAII CATG 1 cut(s) 769
CviQI GTAC 2 cut(s) 803, 1018
DdeI CTNAG 4 cut(s) 260, 730, 825, 860
DpnI GATC 3 cut(s) 493, 743, 962
DpnII GATC 3 cut(s) 491, 741, 960
DraI TTTAAA 1 cut(s) 519
DrdI GACNNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 106, 1072
EarI CTCTTC 2 cut(s) 106, 1072
Eco32I GATATC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 4 cut(s) 314, 369, 422, 807
EcoRV GATATC 1 cut(s) 880
FaeI CATG 1 cut(s) 772
FaqI GGGAC 2 cut(s) 91, 296
FatI CATG 1 cut(s) 768
Fnu4HI GCNGC 4 cut(s) 189, 201, 271, 444
FokI GGATG 2 cut(s) 686, 885
Fsp4HI GCNGC 4 cut(s) 189, 201, 271, 444
FspBI CTAG 1 cut(s) 501
GluI GCNGC 4 cut(s) 189, 201, 271, 444
HaeIII GGCC 1 cut(s) 459
HapII CCGG 1 cut(s) 659
Hin1II CATG 1 cut(s) 772
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 5 cut(s) 236, 319, 374, 389, 427
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 259, 794
Hpy166II GTNNAC 2 cut(s) 691, 1096
Hpy188III TCNNGA 7 cut(s) 108, 277, 290, 335, 764, 794, 902
Hpy8I GTNNAC 2 cut(s) 691, 1096
HpyAV CCTTC 2 cut(s) 773, 1067
HpyCH4III ACNGT 2 cut(s) 211, 761
HpyCH4V TGCA 5 cut(s) 75, 143, 652, 1014, 1096
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 4 cut(s) 260, 730, 825, 860
Hsp92II CATG 1 cut(s) 772
KflI GGGWCCC 1 cut(s) 310
KpnI GGTACC 1 cut(s) 806
Kzo9I GATC 3 cut(s) 491, 741, 960
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 606
MalI GATC 3 cut(s) 493, 743, 962
MbiI CCGCTC 1 cut(s) 191
MboI GATC 3 cut(s) 491, 741, 960
MboII GAAGA 6 cut(s) 93, 490, 568, 841, 844, 1089
MflI RGATCY 1 cut(s) 960
MhlI GDGCHC 2 cut(s) 510, 1098
MluCI AATT 8 cut(s) 12, 138, 356, 612, 735, 905, 1040, 1145
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 7 cut(s) 15, 158, 303, 518, 540, 681, 894
MspI CCGG 1 cut(s) 659
MspR9I CCNGG 4 cut(s) 316, 371, 424, 809
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 4 cut(s) 316, 371, 424, 809
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 3 cut(s) 491, 741, 960
NlaIII CATG 1 cut(s) 772
NlaIV GGNNCC 4 cut(s) 311, 312, 725, 804
NmuCI GTSAC 1 cut(s) 606
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 4 cut(s) 236, 319, 389, 427
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 4 cut(s) 190, 202, 272, 445
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 4 cut(s) 314, 369, 422, 807
PspGI CCWGG 4 cut(s) 314, 369, 422, 807
PspN4I GGNNCC 4 cut(s) 311, 312, 725, 804
PspPI GGNCC 2 cut(s) 310, 458
PspPPI RGGWCCY 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 960
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 2 cut(s) 804, 1019
RsaNI GTAC 2 cut(s) 803, 1018
SaqAI TTAA 7 cut(s) 15, 158, 303, 518, 540, 681, 894
SatI GCNGC 4 cut(s) 189, 201, 271, 444
Sau3AI GATC 3 cut(s) 491, 741, 960
Sau96I GGNCC 2 cut(s) 310, 458
ScaI AGTACT 1 cut(s) 1019
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 4 cut(s) 316, 371, 424, 809
SduI GDGCHC 2 cut(s) 510, 1098
SfaNI GCATC 1 cut(s) 212
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 8 cut(s) 12, 138, 356, 612, 735, 905, 1040, 1145
SsiI CCGC 4 cut(s) 189, 201, 270, 444
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 4 cut(s) 314, 369, 422, 807
TaaI ACNGT 2 cut(s) 211, 761
TaqI TCGA 5 cut(s) 278, 494, 705, 744, 763
TasI AATT 8 cut(s) 12, 138, 356, 612, 735, 905, 1040, 1145
TatI WGTACW 1 cut(s) 1017
TauI GCSGC 4 cut(s) 191, 203, 273, 446
TfiI GAWTC 4 cut(s) 236, 319, 389, 427
Tru1I TTAA 7 cut(s) 15, 158, 303, 518, 540, 681, 894
Tru9I TTAA 7 cut(s) 15, 158, 303, 518, 540, 681, 894
TscAI CASTG 2 cut(s) 764, 871
TseFI GTSAC 1 cut(s) 606
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 5 cut(s) 620, 725, 1080, 1104, 1157
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 2 cut(s) 764, 871
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 120
VneI GTGCAC 1 cut(s) 1094
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 2 cut(s) 356, 1145
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.