Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008810

Physical Location & Seq

Genomic Coordinates Forward (+)

15609418 .. 15610054

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAAAATTGAGTTGCTTTTCTGCAATTGTTAGGGGGAAGAAGAAGGTTAAGGGAGATGAATCTACAAGAAGTGGTGAATTGCGCAAGGGAATTGAAACCCTGCACGTCAGGCTTCAACAGCAGCCTGTGAAATCGTTGGAGATTGATGGGAAATTGAAGCCGGAAACTTTAGGAGTCCTAATACCTTATGGTGTTGAGAAGAAGTACTCTTCCCCTCCTAGTGGCAATACAAGGAGCCCGAAAAGTCCTATCGGGGGTGTTGAAGCAGCAGAAGCAGCGGCTTATGAAGGGGAATATGAGCACGAAGAGAGCCCCATAGCCAGGGGAAACTCTTTTAATGATCACTCTGATCTGCAACTAGATGAAGCCATTTCAGGTGAAGTGACTCCATCAAGGAAGTTGGACTTAGCCGAACCTGATTCGAGCGCTCGAGGTGTCGTTAGGGTTCAAAGTGGGCATCTTAGCGATCCCGGGGTTGGTAAGGCGGAGTTTTGGGCATCACCAAAGCTGAAAAAAATCCCGATCATGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0001889 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003341 GO:0003352 GO:0003356 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0005929 GO:0005930 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009987 GO:0016020 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0030030 GO:0030031 GO:0030323 GO:0030324 GO:0031016 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032838 GO:0032879 GO:0032886 GO:0034622 GO:0035050 GO:0035082 GO:0035239 GO:0035295 GO:0035469 GO:0036158 GO:0036159 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044451 GO:0044458 GO:0044463 GO:0044464 GO:0044782 GO:0044877 GO:0048513 GO:0048562 GO:0048565 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051270 GO:0055123 GO:0060271 GO:0060429 GO:0060541 GO:0060562 GO:0060632 GO:0060972 GO:0061008 GO:0061371 GO:0065003 GO:0065007 GO:0070013 GO:0070286 GO:0070840 GO:0070925 GO:0071840 GO:0071907 GO:0071910 GO:0071944 GO:0072359 GO:0097014 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

179

Amino Acids

19.2

Weight (kDa)

7.82

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78230
fragaria_vesca	FvH4_5g37110 FvH4_5g37110 FvH4_5g37110
malus_domestica	MD00G1009800.v1.1 MD08G1184400.v1.1
prunus_persica	Prupe.1G518600_v2.0.a1 Prupe.1G518600_v2.0.a1 Prupe.1G518600_v2.0.a1
pyrus_communis	pycom08g15810 pycom08g15820 pycom15g33260
rosa_chinensis	RchiOBHm_Chr7g0238651 RchiOBHm_Chr7g0243931 RchiOBHm_Chr7g0243941
rosa_laevigata	RLG00000000821
rosa_multiflora	Rmu_sc0000023.1_g000010
rosa_roxburghii	Rroxscaffold_3G00221650
rosa_rugosa	Rorug07G0322600 Rorug07G0322700
rosa_samantha	Rh7AG477000 Rh7BG448300
rosa_wichuraiana	Rw7G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	86
AciI	CCGC	2 cut(s)	281, 488
AclWI	GGATC	1 cut(s)	464
AfaI	GTAC	1 cut(s)	209
AfeI	AGCGCT	1 cut(s)	430
AfiI	CCNNNNNNNGG	4 cut(s)	224, 257, 324, 479
AgsI	TTSAA	5 cut(s)	98, 119, 160, 266, 452
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	1 cut(s)	511
AluI	AGCT	1 cut(s)	511
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	464
Ama87I	CYCGRG	2 cut(s)	432, 473
Aor51HI	AGCGCT	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	124, 269, 278
AspLEI	GCGC	2 cut(s)	87, 431
AsuC2I	CCSGG	2 cut(s)	474, 475
AsuHPI	GGTGA	3 cut(s)	89, 392, 495
AvaI	CYCGRG	2 cut(s)	432, 473
BanII	GRGCYC	2 cut(s)	242, 317
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	136, 281, 290
BccI	CCATC	2 cut(s)	143, 400
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	474, 475
BfaI	CTAG	2 cut(s)	222, 362
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	4 cut(s)	125, 270, 279, 282
BlsI	GCNGC	4 cut(s)	126, 271, 280, 283
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	3 cut(s)	325, 474, 475
BmeT110I	CYCGRG	2 cut(s)	432, 473
BmgBI	CACGTC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	3 cut(s)	325, 474, 475
BmsI	GCATC	2 cut(s)	469, 509
BpuMI	CCSGG	2 cut(s)	474, 475
BsaJI	CCNNGG	3 cut(s)	324, 473, 474
Bsc4I	CCNNNNNNNGG	4 cut(s)	224, 257, 324, 479
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	324, 473, 474
BseLI	CCNNNNNNNGG	4 cut(s)	224, 257, 324, 479
BseXI	GCAGC	3 cut(s)	136, 281, 290
BsgI	GTGCAG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	2 cut(s)	432, 473
BsiSI	CCGG	2 cut(s)	164, 474
BslI	CCNNNNNNNGG	4 cut(s)	224, 257, 324, 479
BsoBI	CYCGRG	2 cut(s)	432, 473
Bsp1286I	GDGCHC	3 cut(s)	242, 306, 317
Bsp143I	GATC	4 cut(s)	343, 352, 469, 525
BspACI	CCGC	2 cut(s)	281, 488
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	324, 473, 474
BssMI	GATC	4 cut(s)	343, 352, 469, 525
Bst2UI	CCWGG	1 cut(s)	325
Bst6I	CTCTTC	2 cut(s)	217, 303
BstDEI	CTNAG	2 cut(s)	409, 464
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	87, 431
BstKTI	GATC	4 cut(s)	346, 355, 472, 528
BstMBI	GATC	4 cut(s)	343, 352, 469, 525
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 121, 275, 278
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	3 cut(s)	323, 472, 473
BstV1I	GCAGC	3 cut(s)	136, 281, 290
BtrI	CACGTC	1 cut(s)	109
CfoI	GCGC	2 cut(s)	87, 431
Cfr9I	CCCGGG	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	529
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	409, 464
DpnI	GATC	4 cut(s)	345, 354, 471, 527
DpnII	GATC	4 cut(s)	343, 352, 469, 525
Eam1104I	CTCTTC	2 cut(s)	217, 303
EarI	CTCTTC	2 cut(s)	217, 303
EciI	GGCGGA	1 cut(s)	503
Eco24I	GRGCYC	2 cut(s)	242, 317
Eco47III	AGCGCT	1 cut(s)	430
Eco88I	CYCGRG	2 cut(s)	432, 473
EcoRII	CCWGG	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	242, 317
FaeI	CATG	1 cut(s)	532
FaiI	YATR	5 cut(s)	192, 288, 300, 320, 530
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	1 cut(s)	528
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	4 cut(s)	125, 270, 279, 282
FriOI	GRGCYC	2 cut(s)	242, 317
Fsp4HI	GCNGC	4 cut(s)	125, 270, 279, 282
FspBI	CTAG	2 cut(s)	222, 362
FspI	TGCGCA	1 cut(s)	86
GlaI	GCGC	2 cut(s)	86, 430
GluI	GCNGC	4 cut(s)	125, 270, 279, 282
HaeII	RGCGCY	1 cut(s)	432
HapII	CCGG	2 cut(s)	164, 474
HhaI	GCGC	2 cut(s)	87, 431
Hin1II	CATG	1 cut(s)	532
Hin6I	GCGC	2 cut(s)	85, 429
HinP1I	GCGC	2 cut(s)	85, 429
HinfI	GANTC	4 cut(s)	62, 177, 388, 422
HpaII	CCGG	2 cut(s)	164, 474
HphI	GGTGA	3 cut(s)	89, 392, 495
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	523
HpyAV	CCTTC	2 cut(s)	40, 284
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	26, 106, 358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 121, 275, 278
HpyF3I	CTNAG	2 cut(s)	409, 464
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	532
HspAI	GCGC	2 cut(s)	85, 429
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	343, 352, 469, 525
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	9 cut(s)	97, 116, 141, 177, 310, 337, 363, 432, 487
Lsp1109I	GCAGC	3 cut(s)	136, 281, 290
LweI	GCATC	2 cut(s)	469, 509
MaeI	CTAG	2 cut(s)	222, 362
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	4 cut(s)	345, 354, 471, 527
MboI	GATC	4 cut(s)	343, 352, 469, 525
MboII	GAAGA	5 cut(s)	52, 55, 204, 214, 320
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	3 cut(s)	242, 306, 317
MluCI	AATT	5 cut(s)	8, 27, 80, 93, 155
MlyI	GAGTC	2 cut(s)	186, 382
MmeI	TCCRAC	2 cut(s)	120, 384
MnlI	CCTC	2 cut(s)	228, 428
MseI	TTAA	2 cut(s)	51, 339
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	164, 474
MspR9I	CCNGG	3 cut(s)	325, 474, 475
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	112, 121, 275, 278
NciI	CCSGG	2 cut(s)	474, 475
NdeII	GATC	4 cut(s)	343, 352, 469, 525
NlaIII	CATG	1 cut(s)	532
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	385
NsbI	TGCGCA	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	62, 422
PkrI	GCNGC	4 cut(s)	126, 271, 280, 283
PleI	GAGTC	2 cut(s)	185, 382
PpsI	GAGTC	2 cut(s)	185, 382
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	432
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	51, 339
SatI	GCNGC	4 cut(s)	125, 270, 279, 282
Sau3AI	GATC	4 cut(s)	343, 352, 469, 525
ScaI	AGTACT	1 cut(s)	209
SchI	GAGTC	2 cut(s)	186, 382
ScrFI	CCNGG	3 cut(s)	325, 474, 475
SduI	GDGCHC	3 cut(s)	242, 306, 317
SetI	ASST	7 cut(s)	51, 111, 190, 382, 421, 439, 513
SfaNI	GCATC	2 cut(s)	469, 509
Sfr274I	CTCGAG	1 cut(s)	432
SlaI	CTCGAG	1 cut(s)	432
SmaI	CCCGGG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	5 cut(s)	8, 27, 80, 93, 155
SsiI	CCGC	2 cut(s)	281, 488
SspMI	CTAG	2 cut(s)	222, 362
StyD4I	CCNGG	3 cut(s)	323, 472, 473
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	425, 433
TasI	AATT	5 cut(s)	8, 27, 80, 93, 155
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	62, 422
Tru1I	TTAA	2 cut(s)	51, 339
Tru9I	TTAA	2 cut(s)	51, 339
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	3 cut(s)	124, 269, 278
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	75, 303, 381
TspMI	CCCGGG	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	432
XmaI	CCCGGG	1 cut(s)	473
XspI	CTAG	2 cut(s)	222, 362
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.