Rh7AG477000

Leucine-rich repeats, typical (most populated) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
66779309 .. 66783042
3734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG477000.1

Sequence Viewer

Length: 1566 bp
ATGGCAAAAATTAGTTGCTTCTCTCTAATTGTTAGGAAGAAGAAGAAGGTTAAGGGAGATGGTGAATCTGCAAAAGCAGGTGAAGTGGACAAGGCAATTAGGACCCTGCAACTCAGGCTTCAACAACAACCTGTGAAAACTGTGGAAGTTAATGGGTTGAAGCCTTTGAAATCTTTCGGAGCCTTTATCCCTTATGGTGTTGACAAGAAACCTATCAAGGACAAGGTGAAGAGTCCTGATAGCCTTATTGGGTTACGTGAAGCAGCCTATGAAGCTGAAGATGAGCATGGAGAGAGCCCCATCAACTCTAATGGCTCTGATCTTCAGGTCAGTGAAGCCAATGCGGGCGAAGAGGTCTCATTAAGGAAGATGGATTGCTGTGAATCTGATAAGGACTCTGGGAGGGGTGTGGATAGACTAGAAAGTGGGCATCTTAGTGATCCTGGGGTTGTGAAAGCAGAGTTTTGGGGTTCACGAAAGCTAACTCGGTCTTGCTCGAATTTGGAGACTCATAAGGTGGATGGAAAGATGCAGTCTAAGTTGCGTGCTTCGAAGACAGAGTCTTTTGAACAATTGCAGGAATTGGATGGAAGGGTAAGGAAGGATGTTAATCCTGGAAGCCCTGCTTCTGTGGGAAGCCATTTCAGTGCTGATAAGGTGATGCTCAAGAAGCATTCTTCAAGCCAAGTTTTGCCTTCTAGAAGCAGAAGATTGTGGTGGAAGTTGTTTCTTTGGAGCCATAGGAACCTGCACAAATCATCATCCACTGCAACACCAAAGCAACTTCCCTACAAAATTAAATTGAATATGCAAGGCGGGTACTCTTCGGATACGCTTGAACCAAACAGAGTTATGCAATTCGAAAAGATGGAATCACCTCTGTCCTTTAAATCTGTAGACAAAGGGAAGAACATCGTGAATGATGACCAGAGCTGGACCGGTTTTCAAATTAGATCCTCATCCTTATGGCCTCAGAACCAATGGGTTGCATTCTCAACAGAAGCATCCTCATCTTCGAGAGTGTTAGACTGGATGAAAGATCTCGACACAACACCCTCCTCACTTCTATCTAACGAAGATAAAGATGATGGAGTCGTCACTCCACAAACCCCACCCTCTCCTCAAACTCCTGGATCAAGAAGCTCAACTTACTTCACTCGAGGTCCCGATGCCAACCTTTCAGAGGATACATTGCATGCTAATACCGTAATCCAGACTCTAAACTCTTCGTCTACAGTGGCTCACATCTCTGGTATGGGCTTAAAAGCCATCCCCATCATTTCATGCTTCTGCAGCCTTCGATCCGTTAACTTGTCAAACAACTTCATAGTTCACATCACTCCAGGATCGCTGCCAAAGAGCCTTCACACACTTGATTTGTCCAAAAACAAGATCAGCTCCATTGAAGGACTGAGAGAATTAAGCCATTTGCGAGTACTAAACCTCAGTTACAATCGGATTTCTAGAATTGGACGCGGTAATAAACCAATCAGACCGGTTTTACAACCACCAATTTTATCTTTGAAAATATCATTCAAACTGATCACTGACTCATTGTGGATTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

57.68

Weight (kDa)

9.49

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 432 - 487 2.3e-10 Leucine rich repeat
LRR_4 PF12799 453 - 490 5.8e-08 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 2 cut(s) 68, 756
AccI GTMKAC 2 cut(s) 897, 1232
AccII CGCG 1 cut(s) 1476
AciI CCGC 3 cut(s) 344, 816, 1476
AclWI GGATC 5 cut(s) 434, 948, 1141, 1296, 1354
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 2 cut(s) 297, 308
AfaI GTAC 2 cut(s) 821, 1437
AfiI CCNNNNNNNGG 1 cut(s) 1183
AgeI ACCGGT 2 cut(s) 938, 1495
AjnI CCWGG 4 cut(s) 442, 613, 1129, 1342
AluBI AGCT 5 cut(s) 275, 481, 933, 1143, 1398
AluI AGCT 5 cut(s) 275, 481, 933, 1143, 1398
Alw26I GTCTC 2 cut(s) 361, 500
AlwI GGATC 5 cut(s) 434, 948, 1141, 1296, 1354
Ama87I CYCGRG 1 cut(s) 1158
AoxI GGCC 1 cut(s) 968
ApeKI GCWGC 3 cut(s) 263, 1293, 1351
ApoI RAATTY 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AsiGI ACCGGT 2 cut(s) 938, 1495
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 102, 936, 1163
AsuHPI GGTGA 5 cut(s) 74, 92, 238, 670, 867
AsuII TTCGAA 2 cut(s) 551, 861
AvaI CYCGRG 1 cut(s) 1158
AvaII GGWCC 3 cut(s) 102, 936, 1163
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 560
BbvI GCAGC 3 cut(s) 275, 1305, 1338
BccI CCATC 9 cut(s) 53, 308, 364, 515, 581, 862, 1082, 1277, 1283
BciT130I CCWGG 4 cut(s) 444, 615, 1131, 1344
BciVI GTATCC 2 cut(s) 823, 1180
BclI TGATCA 1 cut(s) 1542
BcoDI GTCTC 2 cut(s) 361, 500
BfaI CTAG 3 cut(s) 419, 699, 1464
BfmI CTRYAG 3 cut(s) 894, 1233, 1291
BfuAI ACCTGC 2 cut(s) 68, 756
BfuI GTATCC 2 cut(s) 823, 1180
BglII AGATCT 1 cut(s) 1039
BisI GCNGC 3 cut(s) 264, 1294, 1352
BlsI GCNGC 3 cut(s) 265, 1295, 1353
BmcAI AGTACT 1 cut(s) 1437
Bme1390I CCNGG 4 cut(s) 444, 615, 1131, 1344
Bme18I GGWCC 3 cut(s) 102, 936, 1163
BmeT110I CYCGRG 1 cut(s) 1158
BmgT120I GGNCC 3 cut(s) 102, 936, 1163
BmiI GGNNCC 5 cut(s) 104, 181, 737, 746, 1165
BmrFI CCNGG 4 cut(s) 444, 615, 1131, 1344
BmsI GCATC 5 cut(s) 439, 519, 651, 1013, 1159
BpiI GAAGAC 1 cut(s) 560
BpmI CTGGAG 1 cut(s) 1326
Bpu14I TTCGAA 2 cut(s) 551, 861
BpuEI CTTGAG 1 cut(s) 650
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 2 cut(s) 609, 958
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 2 cut(s) 938, 1495
Bsc4I CCNNNNNNNGG 1 cut(s) 1183
Bse118I RCCGGY 2 cut(s) 938, 1495
Bse1I ACTGG 1 cut(s) 1034
Bse3DI GCAATG 1 cut(s) 1190
Bse8I GATNNNNATC 2 cut(s) 609, 958
BseBI CCWGG 4 cut(s) 444, 615, 1131, 1344
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 8 cut(s) 526, 592, 610, 761, 959, 1004, 1038, 1269
BseJI GATNNNNATC 2 cut(s) 609, 958
BseLI CCNNNNNNNGG 1 cut(s) 1183
BseMI GCAATG 1 cut(s) 1190
BseMII CTCAG 4 cut(s) 127, 986, 1403, 1459
BseNI ACTGG 1 cut(s) 1034
BseRI GAGGAG 2 cut(s) 1048, 1110
BseXI GCAGC 3 cut(s) 275, 1305, 1338
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 1 cut(s) 1476
BshFI GGCC 1 cut(s) 970
BshTI ACCGGT 2 cut(s) 938, 1495
BsiHKCI CYCGRG 1 cut(s) 1158
BsiSI CCGG 2 cut(s) 939, 1496
BslFI GGGAC 1 cut(s) 1149
BslI CCNNNNNNNGG 1 cut(s) 1183
BsmAI GTCTC 2 cut(s) 361, 500
BsmFI GGGAC 1 cut(s) 1149
BsmI GAATGC 2 cut(s) 673, 989
BsnI GGCC 1 cut(s) 970
Bso31I GGTCTC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 1158
Bsp119I TTCGAA 2 cut(s) 551, 861
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
BspACI CCGC 3 cut(s) 344, 816, 1476
BspANI GGCC 1 cut(s) 970
BspCNI CTCAG 4 cut(s) 126, 985, 1404, 1458
BspFNI CGCG 1 cut(s) 1476
BspLI GGNNCC 5 cut(s) 104, 181, 737, 746, 1165
BspMAI CTGCAG 1 cut(s) 1295
BspMI ACCTGC 2 cut(s) 68, 756
BspPI GGATC 5 cut(s) 434, 948, 1141, 1296, 1354
BspT104I TTCGAA 2 cut(s) 551, 861
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 1190
BsrFI RCCGGY 2 cut(s) 938, 1495
BsrI ACTGG 1 cut(s) 1034
BssAI RCCGGY 2 cut(s) 938, 1495
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
Bst2UI CCWGG 4 cut(s) 444, 615, 1131, 1344
Bst4CI ACNGT 3 cut(s) 142, 1207, 1237
Bst6I CTCTTC 4 cut(s) 224, 345, 829, 1231
BstBAI YACGTR 1 cut(s) 257
BstBI TTCGAA 2 cut(s) 551, 861
BstC8I GCNNGC 3 cut(s) 346, 546, 1197
BstDEI CTNAG 6 cut(s) 113, 434, 537, 972, 1412, 1445
BstENI CCTNNNNNAGG 1 cut(s) 1181
BstF5I GGATG 8 cut(s) 526, 592, 610, 761, 959, 1004, 1038, 1269
BstFNI CGCG 1 cut(s) 1476
BstKTI GATC 9 cut(s) 322, 442, 956, 1042, 1136, 1304, 1349, 1395, 1545
BstMAI GTCTC 2 cut(s) 361, 500
BstMBI GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
BstMWI GCNNNNNNNGC 4 cut(s) 115, 272, 670, 1293
BstNI CCWGG 4 cut(s) 444, 615, 1131, 1344
BstNSI RCATGY 1 cut(s) 1199
BstSCI CCNGG 4 cut(s) 442, 613, 1129, 1342
BstSFI CTRYAG 3 cut(s) 894, 1233, 1291
BstUI CGCG 1 cut(s) 1476
BstV1I GCAGC 3 cut(s) 275, 1305, 1338
BstV2I GAAGAC 1 cut(s) 560
BstX2I RGATCY 2 cut(s) 953, 1039
BstYI RGATCY 2 cut(s) 953, 1039
BsuI GTATCC 2 cut(s) 823, 1180
BsuRI GGCC 1 cut(s) 970
BtsCI GGATG 8 cut(s) 526, 592, 610, 761, 959, 1004, 1038, 1269
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 5 cut(s) 337, 652, 765, 1242, 1545
BveI ACCTGC 2 cut(s) 68, 756
Cac8I GCNNGC 3 cut(s) 346, 546, 1197
Cfr10I RCCGGY 2 cut(s) 938, 1495
Cfr13I GGNCC 3 cut(s) 102, 936, 1163
CseI GACGC 1 cut(s) 1482
Csp6I GTAC 2 cut(s) 820, 1436
CspAI ACCGGT 2 cut(s) 938, 1495
CviAII CATG 3 cut(s) 287, 1196, 1284
CviQI GTAC 2 cut(s) 820, 1436
DdeI CTNAG 6 cut(s) 113, 434, 537, 972, 1412, 1445
DpnI GATC 9 cut(s) 321, 441, 955, 1041, 1135, 1303, 1348, 1394, 1544
DpnII GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
DraI TTTAAA 1 cut(s) 889
Eam1104I CTCTTC 4 cut(s) 224, 345, 829, 1231
EarI CTCTTC 4 cut(s) 224, 345, 829, 1231
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 102, 936, 1163
Eco57I CTGAAG 2 cut(s) 297, 308
Eco88I CYCGRG 1 cut(s) 1158
EcoNI CCTNNNNNAGG 1 cut(s) 1181
EcoO109I RGGNCCY 2 cut(s) 102, 1163
EcoRII CCWGG 4 cut(s) 442, 613, 1129, 1342
EcoT38I GRGCYC 1 cut(s) 299
FaeI CATG 3 cut(s) 290, 1199, 1287
FalI AAGNNNNNCTT 4 cut(s) 610, 642, 1132, 1164
FaqI GGGAC 1 cut(s) 1149
FatI CATG 3 cut(s) 286, 1195, 1283
FauI CCCGC 2 cut(s) 337, 809
FbaI TGATCA 1 cut(s) 1542
FblI GTMKAC 2 cut(s) 897, 1232
Fnu4HI GCNGC 3 cut(s) 264, 1294, 1352
FokI GGATG 8 cut(s) 533, 599, 617, 748, 946, 991, 1045, 1256
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 3 cut(s) 264, 1294, 1352
FspBI CTAG 3 cut(s) 419, 699, 1464
GluI GCNGC 3 cut(s) 264, 1294, 1352
GsuI CTGGAG 1 cut(s) 1326
HaeIII GGCC 1 cut(s) 970
HapII CCGG 2 cut(s) 939, 1496
HgaI GACGC 1 cut(s) 1482
Hin1II CATG 3 cut(s) 290, 1199, 1287
HincII GTYRAC 2 cut(s) 202, 1309
HindII GTYRAC 2 cut(s) 202, 1309
HpaI GTTAAC 1 cut(s) 1309
HpaII CCGG 2 cut(s) 939, 1496
HphI GGTGA 5 cut(s) 74, 92, 238, 670, 867
Hpy166II GTNNAC 7 cut(s) 88, 202, 473, 898, 1233, 1309, 1333
Hpy188I TCNGA 8 cut(s) 179, 319, 388, 829, 975, 1183, 1458, 1493
Hpy8I GTNNAC 7 cut(s) 88, 202, 473, 898, 1233, 1309, 1333
HpyAV CCTTC 7 cut(s) 40, 585, 595, 705, 1307, 1373, 1400
HpyCH4III ACNGT 3 cut(s) 142, 1207, 1237
HpyCH4IV ACGT 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 272, 670, 1293
HpyF3I CTNAG 6 cut(s) 113, 434, 537, 972, 1412, 1445
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 3 cut(s) 290, 1199, 1287
Ksp22I TGATCA 1 cut(s) 1542
KspAI GTTAAC 1 cut(s) 1309
Kzo9I GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
LmnI GCTCC 3 cut(s) 179, 735, 1403
Lsp1109I GCAGC 3 cut(s) 275, 1305, 1338
LweI GCATC 5 cut(s) 439, 519, 651, 1013, 1159
MaeI CTAG 3 cut(s) 419, 699, 1464
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 3 cut(s) 252, 1096, 1448
MalI GATC 9 cut(s) 321, 441, 955, 1041, 1135, 1303, 1348, 1394, 1544
MboI GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 2 cut(s) 953, 1039
MhlI GDGCHC 1 cut(s) 299
MlyI GAGTC 7 cut(s) 241, 389, 502, 569, 1101, 1210, 1544
MroXI GAANNNNTTC 1 cut(s) 173
MslI CAYNNNNRTG 3 cut(s) 435, 645, 964
MspI CCGG 2 cut(s) 939, 1496
MspR9I CCNGG 4 cut(s) 444, 615, 1131, 1344
MunI CAATTG 1 cut(s) 572
Mva1269I GAATGC 2 cut(s) 673, 989
MvaI CCWGG 4 cut(s) 444, 615, 1131, 1344
MvnI CGCG 1 cut(s) 1476
MwoI GCNNNNNNNGC 4 cut(s) 115, 272, 670, 1293
NdeII GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
NlaIII CATG 3 cut(s) 290, 1199, 1287
NlaIV GGNNCC 5 cut(s) 104, 181, 737, 746, 1165
NmuCI GTSAC 1 cut(s) 1096
NspI RCATGY 1 cut(s) 1199
NspV TTCGAA 2 cut(s) 551, 861
PaeI GCATGC 1 cut(s) 1199
PaeR7I CTCGAG 1 cut(s) 1158
PaqCI CACCTGC 1 cut(s) 68
PctI GAATGC 2 cut(s) 673, 989
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 65, 383, 872
PflFI GACNNNGTC 1 cut(s) 559
PfoI TCCNGGA 3 cut(s) 613, 1129, 1342
PinAI ACCGGT 2 cut(s) 938, 1495
PkrI GCNGC 3 cut(s) 265, 1295, 1353
PleI GAGTC 7 cut(s) 240, 389, 502, 568, 1100, 1210, 1544
PpsI GAGTC 7 cut(s) 240, 389, 502, 568, 1100, 1210, 1544
Ppu21I YACGTR 1 cut(s) 257
PpuMI RGGWCCY 2 cut(s) 102, 1163
Psp5II RGGWCCY 2 cut(s) 102, 1163
Psp6I CCWGG 4 cut(s) 442, 613, 1129, 1342
PspGI CCWGG 4 cut(s) 442, 613, 1129, 1342
PspN4I GGNNCC 5 cut(s) 104, 181, 737, 746, 1165
PspPI GGNCC 3 cut(s) 102, 936, 1163
PspPPI RGGWCCY 2 cut(s) 102, 1163
PspXI VCTCGAGB 1 cut(s) 1158
PstI CTGCAG 1 cut(s) 1295
PsuI RGATCY 2 cut(s) 953, 1039
PsyI GACNNNGTC 1 cut(s) 559
RsaI GTAC 2 cut(s) 821, 1437
RsaNI GTAC 2 cut(s) 820, 1436
RseI CAYNNNNRTG 3 cut(s) 435, 645, 964
SatI GCNGC 3 cut(s) 264, 1294, 1352
Sau3AI GATC 9 cut(s) 319, 439, 953, 1039, 1133, 1301, 1346, 1392, 1542
Sau96I GGNCC 3 cut(s) 102, 936, 1163
ScaI AGTACT 1 cut(s) 1437
SchI GAGTC 7 cut(s) 241, 389, 502, 569, 1101, 1210, 1544
ScrFI CCNGG 4 cut(s) 444, 615, 1131, 1344
SduI GDGCHC 1 cut(s) 299
SfaNI GCATC 5 cut(s) 439, 519, 651, 1013, 1159
SfcI CTRYAG 3 cut(s) 894, 1233, 1291
Sfr274I CTCGAG 1 cut(s) 1158
SfuI TTCGAA 2 cut(s) 551, 861
SinI GGWCC 3 cut(s) 102, 936, 1163
SlaI CTCGAG 1 cut(s) 1158
SmiMI CAYNNNNRTG 3 cut(s) 435, 645, 964
SmlI CTYRAG 2 cut(s) 665, 1158
SmoI CTYRAG 2 cut(s) 665, 1158
SphI GCATGC 1 cut(s) 1199
SsiI CCGC 3 cut(s) 344, 816, 1476
SspMI CTAG 3 cut(s) 419, 699, 1464
StyD4I CCNGG 4 cut(s) 442, 613, 1129, 1342
TaaI ACNGT 3 cut(s) 142, 1207, 1237
TaiI ACGT 1 cut(s) 259
TaqI TCGA 7 cut(s) 497, 551, 861, 1016, 1044, 1159, 1300
TaqII GACCGA 1 cut(s) 477
TatI WGTACW 1 cut(s) 1435
TfiI GAWTC 3 cut(s) 65, 383, 872
TscAI CASTG 5 cut(s) 337, 652, 772, 1242, 1552
TseFI GTSAC 1 cut(s) 1096
TseI GCWGC 3 cut(s) 263, 1293, 1351
Tsp45I GTSAC 1 cut(s) 1096
TspDTI ATGAA 4 cut(s) 285, 1049, 1272, 1315
TspGWI ACGGA 1 cut(s) 1294
TspRI CASTG 5 cut(s) 337, 652, 772, 1242, 1552
Tth111I GACNNNGTC 1 cut(s) 559
VpaK11BI GGWCC 3 cut(s) 102, 936, 1163
XagI CCTNNNNNAGG 1 cut(s) 1181
XapI RAATTY 1 cut(s) 499
XbaI TCTAGA 2 cut(s) 698, 1463
XceI RCATGY 1 cut(s) 1199
XhoI CTCGAG 1 cut(s) 1158
XmiI GTMKAC 2 cut(s) 897, 1232
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 3 cut(s) 419, 699, 1464
ZrmI AGTACT 1 cut(s) 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.