RchiOBHm_Chr7g0243931

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008810
Physical Location & Seq
Reverse (-)
70232227 .. 70234154
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21862

Sequence Viewer

Length: 843 bp
ATGCAGTCTAAGTTGCGTGCTTCGAAGACAGAGTCTTTTGAACAATTGCAGGAATTGGATGGAAGGGTAAGGAAGGATGTTAATCCTGGAAGCCCTGCTTCTGTGGGAAGCCATTTCAGTGCTGATAAGGTGATGCTCAAGAAGCATTCTTCAAGCCAAGTTTTGCCTTCTAGAAGCAGAAGATTGTGGTGGAAGTTTCTTTGGAGCCATAGGAACCTGCACAAATCATCATCCACTGCAACACCAAAGCAACTTCCCTACAAAATTAAATTGAATATGCAAGGCGGGTACTCTTCGGATACGCTTGAACCAAACAGAGTTATGCAATTCGAAAAGATGGAATCACCTCTGTCCTTTAAATCTGTAGACAAAGGGAAGAACATCGTGAATGATGACCAGAGCTGGACCGGTTTTCAAATTAGATCCTCATCCTTATGGCCTCAGAACCAATGGGTTGCATTCTCAACAGAAGCATCCTCATCTTCGAGAGTGTTAGACTGGATGAAAGATCTCGACACAACACCCTCCTCACTTCTATCTAACGAAGATAAAGATGATGGAGTCGTCACTCCACAAACCCCACCCTCTCCTCAAACTCCTGGATCAAGAAGCTCAACTTACTTCACTCGAGGTCCCGATGCCAACCTTTCAGAGGATACATTGCATGCTAATACCGTAATCCAGACTCTAAACTCTTCGTCTACAGTGGCTCACATCTCTGGTATGGGCTTAAAAGCCATCCCCATCATTTCATGCTTCTGCAGCCTTCGATCCGTTAACTTGTCAAACAACTTCATAGTTCACATCACTCCAGATCGTGCCAAAGAGCCTTCACACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0001578 GO:0001889 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003341 GO:0003352 GO:0003356 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0005929 GO:0005930 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009987 GO:0016020 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0030030 GO:0030031 GO:0030323 GO:0030324 GO:0031016 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032838 GO:0032879 GO:0032886 GO:0034622 GO:0035050 GO:0035082 GO:0035239 GO:0035295 GO:0035469 GO:0036158 GO:0036159 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044451 GO:0044458 GO:0044463 GO:0044464 GO:0044782 GO:0044877 GO:0048513 GO:0048562 GO:0048565 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051270 GO:0055123 GO:0060271 GO:0060429 GO:0060541 GO:0060562 GO:0060632 GO:0060972 GO:0061008 GO:0061371 GO:0065003 GO:0065007 GO:0070013 GO:0070286 GO:0070840 GO:0070925 GO:0071840 GO:0071907 GO:0071910 GO:0071944 GO:0072359 GO:0097014 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_6 LRR_8

Protein Analysis

280

Amino Acids

31.2

Weight (kDa)

9.41

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 225
AccI GTMKAC 2 cut(s) 366, 701
AciI CCGC 1 cut(s) 285
AclWI GGATC 3 cut(s) 417, 610, 765
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 652
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 5 cut(s) 41, 153, 274, 308, 416
AjnI CCWGG 2 cut(s) 85, 598
AluBI AGCT 2 cut(s) 402, 612
AluI AGCT 2 cut(s) 402, 612
AlwI GGATC 3 cut(s) 417, 610, 765
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 762
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AsiGI ACCGGT 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 405, 632
AsuHPI GGTGA 2 cut(s) 142, 336
AsuII TTCGAA 2 cut(s) 23, 330
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 2 cut(s) 405, 632
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 774
BccI CCATC 5 cut(s) 53, 331, 551, 746, 752
BciT130I CCWGG 2 cut(s) 87, 600
BciVI GTATCC 2 cut(s) 292, 649
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 3 cut(s) 363, 702, 760
BfuAI ACCTGC 1 cut(s) 225
BfuI GTATCC 2 cut(s) 292, 649
BglII AGATCT 1 cut(s) 508
BisI GCNGC 1 cut(s) 763
BlsI GCNGC 1 cut(s) 764
Bme1390I CCNGG 2 cut(s) 87, 600
Bme18I GGWCC 2 cut(s) 405, 632
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 2 cut(s) 405, 632
BmiI GGNNCC 3 cut(s) 206, 215, 634
BmrFI CCNGG 2 cut(s) 87, 600
BmsI GCATC 3 cut(s) 123, 482, 628
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 795
Bpu14I TTCGAA 2 cut(s) 23, 330
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 2 cut(s) 81, 427
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 503
Bse3DI GCAATG 1 cut(s) 659
Bse8I GATNNNNATC 2 cut(s) 81, 427
BseBI CCWGG 2 cut(s) 87, 600
BseGI GGATG 7 cut(s) 64, 82, 230, 428, 473, 507, 738
BseJI GATNNNNATC 2 cut(s) 81, 427
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 659
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 503
BseRI GAGGAG 2 cut(s) 517, 579
BseXI GCAGC 1 cut(s) 774
BsgI GTGCAG 1 cut(s) 203
BshFI GGCC 1 cut(s) 439
BshTI ACCGGT 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 1 cut(s) 652
BsmFI GGGAC 1 cut(s) 618
BsmI GAATGC 2 cut(s) 145, 458
BsnI GGCC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 627
Bsp119I TTCGAA 2 cut(s) 23, 330
Bsp143I GATC 5 cut(s) 422, 508, 602, 770, 814
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 3 cut(s) 206, 215, 634
BspMAI CTGCAG 1 cut(s) 764
BspMI ACCTGC 1 cut(s) 225
BspPI GGATC 3 cut(s) 417, 610, 765
BspT104I TTCGAA 2 cut(s) 23, 330
BsrDI GCAATG 1 cut(s) 659
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 407
BssMI GATC 5 cut(s) 422, 508, 602, 770, 814
Bst2UI CCWGG 2 cut(s) 87, 600
Bst4CI ACNGT 2 cut(s) 676, 706
Bst6I CTCTTC 2 cut(s) 298, 700
BstBI TTCGAA 2 cut(s) 23, 330
BstC8I GCNNGC 2 cut(s) 18, 666
BstDEI CTNAG 2 cut(s) 9, 441
BstENI CCTNNNNNAGG 1 cut(s) 650
BstF5I GGATG 7 cut(s) 64, 82, 230, 428, 473, 507, 738
BstKTI GATC 5 cut(s) 425, 511, 605, 773, 817
BstMBI GATC 5 cut(s) 422, 508, 602, 770, 814
BstMWI GCNNNNNNNGC 2 cut(s) 142, 762
BstNI CCWGG 2 cut(s) 87, 600
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 2 cut(s) 85, 598
BstSFI CTRYAG 3 cut(s) 363, 702, 760
BstV1I GCAGC 1 cut(s) 774
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 422, 508
BstYI RGATCY 2 cut(s) 422, 508
BsuI GTATCC 2 cut(s) 292, 649
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 7 cut(s) 64, 82, 230, 428, 473, 507, 738
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 3 cut(s) 124, 234, 711
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 18, 666
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 2 cut(s) 405, 632
Csp6I GTAC 1 cut(s) 289
CspAI ACCGGT 1 cut(s) 407
CviAII CATG 2 cut(s) 665, 753
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 9, 441
DpnI GATC 5 cut(s) 424, 510, 604, 772, 816
DpnII GATC 5 cut(s) 422, 508, 602, 770, 814
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 298, 700
EarI CTCTTC 2 cut(s) 298, 700
Eco47I GGWCC 2 cut(s) 405, 632
Eco88I CYCGRG 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 632
EcoRII CCWGG 2 cut(s) 85, 598
FaeI CATG 2 cut(s) 668, 756
FaiI YATR 8 cut(s) 210, 278, 323, 436, 666, 725, 754, 797
FalI AAGNNNNNCTT 4 cut(s) 82, 114, 601, 633
FaqI GGGAC 1 cut(s) 618
FatI CATG 2 cut(s) 664, 752
FauI CCCGC 1 cut(s) 278
FblI GTMKAC 2 cut(s) 366, 701
Fnu4HI GCNGC 1 cut(s) 763
FokI GGATG 7 cut(s) 71, 89, 217, 415, 460, 514, 725
Fsp4HI GCNGC 1 cut(s) 763
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 795
HaeIII GGCC 1 cut(s) 439
HapII CCGG 1 cut(s) 408
Hin1II CATG 2 cut(s) 668, 756
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 4 cut(s) 32, 341, 561, 685
HpaI GTTAAC 1 cut(s) 778
HpaII CCGG 1 cut(s) 408
HphI GGTGA 2 cut(s) 142, 336
Hpy166II GTNNAC 4 cut(s) 367, 702, 778, 802
Hpy188I TCNGA 3 cut(s) 298, 444, 652
Hpy188III TCNNGA 9 cut(s) 139, 171, 385, 486, 512, 606, 635, 682, 812
Hpy8I GTNNAC 4 cut(s) 367, 702, 778, 802
HpyAV CCTTC 5 cut(s) 57, 67, 177, 776, 840
HpyCH4III ACNGT 2 cut(s) 676, 706
HpyCH4V TGCA 9 cut(s) 4, 49, 220, 239, 280, 325, 458, 664, 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 762
HpyF3I CTNAG 2 cut(s) 9, 441
Hsp92II CATG 2 cut(s) 668, 756
KspAI GTTAAC 1 cut(s) 778
Kzo9I GATC 5 cut(s) 422, 508, 602, 770, 814
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 1 cut(s) 774
LweI GCATC 3 cut(s) 123, 482, 628
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 565
MalI GATC 5 cut(s) 424, 510, 604, 772, 816
MboI GATC 5 cut(s) 422, 508, 602, 770, 814
MboII GAAGA 8 cut(s) 37, 141, 192, 285, 388, 474, 557, 687
MfeI CAATTG 1 cut(s) 44
MflI RGATCY 2 cut(s) 422, 508
MluCI AATT 6 cut(s) 44, 53, 264, 269, 326, 417
MlyI GAGTC 3 cut(s) 41, 570, 679
MseI TTAA 5 cut(s) 81, 267, 357, 731, 777
MslI CAYNNNNRTG 2 cut(s) 117, 433
MspI CCGG 1 cut(s) 408
MspR9I CCNGG 2 cut(s) 87, 600
MunI CAATTG 1 cut(s) 44
Mva1269I GAATGC 2 cut(s) 145, 458
MvaI CCWGG 2 cut(s) 87, 600
MwoI GCNNNNNNNGC 2 cut(s) 142, 762
NdeII GATC 5 cut(s) 422, 508, 602, 770, 814
NlaIII CATG 2 cut(s) 668, 756
NlaIV GGNNCC 3 cut(s) 206, 215, 634
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 1 cut(s) 668
NspV TTCGAA 2 cut(s) 23, 330
PaeI GCATGC 1 cut(s) 668
PaeR7I CTCGAG 1 cut(s) 627
PctI GAATGC 2 cut(s) 145, 458
PfeI GAWTC 1 cut(s) 341
PflFI GACNNNGTC 1 cut(s) 31
PfoI TCCNGGA 2 cut(s) 85, 598
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 1 cut(s) 764
PleI GAGTC 3 cut(s) 40, 569, 679
PpsI GAGTC 3 cut(s) 40, 569, 679
PpuMI RGGWCCY 1 cut(s) 632
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 85, 598
PspGI CCWGG 2 cut(s) 85, 598
PspN4I GGNNCC 3 cut(s) 206, 215, 634
PspPI GGNCC 2 cut(s) 405, 632
PspPPI RGGWCCY 1 cut(s) 632
PspXI VCTCGAGB 1 cut(s) 627
PstI CTGCAG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 422, 508
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 2 cut(s) 117, 433
SaqAI TTAA 5 cut(s) 81, 267, 357, 731, 777
SatI GCNGC 1 cut(s) 763
Sau3AI GATC 5 cut(s) 422, 508, 602, 770, 814
Sau96I GGNCC 2 cut(s) 405, 632
SchI GAGTC 3 cut(s) 41, 570, 679
ScrFI CCNGG 2 cut(s) 87, 600
SetI ASST 7 cut(s) 132, 219, 349, 404, 614, 634, 648
SfaNI GCATC 3 cut(s) 123, 482, 628
SfcI CTRYAG 3 cut(s) 363, 702, 760
Sfr274I CTCGAG 1 cut(s) 627
SfuI TTCGAA 2 cut(s) 23, 330
SinI GGWCC 2 cut(s) 405, 632
SlaI CTCGAG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 117, 433
SmlI CTYRAG 2 cut(s) 137, 627
SmoI CTYRAG 2 cut(s) 137, 627
SphI GCATGC 1 cut(s) 668
Sse9I AATT 6 cut(s) 44, 53, 264, 269, 326, 417
SsiI CCGC 1 cut(s) 285
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 85, 598
TaaI ACNGT 2 cut(s) 676, 706
TaqI TCGA 6 cut(s) 23, 330, 485, 513, 628, 769
TasI AATT 6 cut(s) 44, 53, 264, 269, 326, 417
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 5 cut(s) 81, 267, 357, 731, 777
Tru9I TTAA 5 cut(s) 81, 267, 357, 731, 777
TscAI CASTG 3 cut(s) 124, 241, 711
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 1 cut(s) 762
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 3 cut(s) 518, 741, 784
TspGWI ACGGA 1 cut(s) 763
TspRI CASTG 3 cut(s) 124, 241, 711
Tth111I GACNNNGTC 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 405, 632
XagI CCTNNNNNAGG 1 cut(s) 650
XbaI TCTAGA 1 cut(s) 170
XceI RCATGY 1 cut(s) 668
XhoI CTCGAG 1 cut(s) 627
XmiI GTMKAC 2 cut(s) 366, 701
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.