Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008810

Physical Location & Seq

Genomic Coordinates Reverse (-)

70234156 .. 70235645

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCAAAAATTAGTTGCTTCTCTCTAATTGTTAGGAAGAAGAAGAAGGTTAAGGGAGATGGTGAATCTGCAAAAGCAGGTGAAGTGGACAAGGCAATTAGGACCCTGCAACTCAGGCTTCAACAACAACCTGTGAAAACTGTGGAAGTTAATGGGTTGAAGCCTTTGAAATCTTTCGGAGCCTTTATCCCTTATGGTGTTGACAAGAAACCTATCAAGGACAAGGTGAAGAGTCCTGATAGCCTTATTGGGTTACGTGAAGCAGCCTATGAAGCTGAAGATGAGCATGGAGAGAGCCCCATCAACTCTAATGGCTCTGATCTTCAGGTCAGTGAAGCCAATGCGGGCGAAGAGGTCTCATTAAGGAAGATGGATTGCTGTGAATCTGATAAGGACTCTGGAGGGGTGTGGATAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0001889 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003341 GO:0003352 GO:0003356 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0005929 GO:0005930 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009987 GO:0016020 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0030030 GO:0030031 GO:0030323 GO:0030324 GO:0031016 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032838 GO:0032879 GO:0032886 GO:0034622 GO:0035050 GO:0035082 GO:0035239 GO:0035295 GO:0035469 GO:0036158 GO:0036159 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044451 GO:0044458 GO:0044463 GO:0044464 GO:0044782 GO:0044877 GO:0048513 GO:0048562 GO:0048565 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051270 GO:0055123 GO:0060271 GO:0060429 GO:0060541 GO:0060562 GO:0060632 GO:0060972 GO:0061008 GO:0061371 GO:0065003 GO:0065007 GO:0070013 GO:0070286 GO:0070840 GO:0070925 GO:0071840 GO:0071907 GO:0071910 GO:0071944 GO:0072359 GO:0097014 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

139

Amino Acids

15.12

Weight (kDa)

6.61

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78230
fragaria_vesca	FvH4_5g37110 FvH4_5g37110 FvH4_5g37110
malus_domestica	MD00G1009800.v1.1 MD08G1184400.v1.1
prunus_persica	Prupe.1G518600_v2.0.a1 Prupe.1G518600_v2.0.a1 Prupe.1G518600_v2.0.a1
pyrus_communis	pycom08g15810 pycom08g15820 pycom15g33260
rosa_chinensis	RchiOBHm_Chr7g0238651 RchiOBHm_Chr7g0243931 RchiOBHm_Chr7g0243941
rosa_laevigata	RLG00000000821
rosa_multiflora	Rmu_sc0000023.1_g000010
rosa_roxburghii	Rroxscaffold_3G00221650
rosa_rugosa	Rorug07G0322600 Rorug07G0322700
rosa_samantha	Rh7AG477000 Rh7BG448300
rosa_wichuraiana	Rw7G039820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	1 cut(s)	344
AcuI	CTGAAG	2 cut(s)	297, 308
AgsI	TTSAA	3 cut(s)	122, 160, 169
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	74, 92, 238
AvaII	GGWCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	3 cut(s)	53, 308, 364
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	104, 181
BpmI	CTGGAG	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	361
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	104, 181
BspMI	ACCTGC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	361
BssMI	GATC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	224, 345
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 272
BstV1I	GCAGC	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	102
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	9 cut(s)	118, 163, 182, 243, 266, 275, 297, 315, 338
CviKI_1	RGCY	9 cut(s)	118, 163, 182, 243, 266, 275, 297, 315, 338
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	224, 345
EarI	CTCTTC	2 cut(s)	224, 345
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	297, 308
EcoO109I	RGGNCCY	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	1 cut(s)	290
FaiI	YATR	3 cut(s)	195, 270, 288
FatI	CATG	1 cut(s)	286
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	418
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	420
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	65, 232, 383, 395
HphI	GGTGA	3 cut(s)	74, 92, 238
Hpy166II	GTNNAC	2 cut(s)	88, 202
Hpy188I	TCNGA	3 cut(s)	179, 319, 388
Hpy188III	TCNNGA	2 cut(s)	236, 399
Hpy8I	GTNNAC	2 cut(s)	88, 202
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	71, 109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 272
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	7 cut(s)	63, 100, 119, 144, 249, 311, 384
Lsp1109I	GCAGC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	418
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	8 cut(s)	49, 52, 55, 241, 290, 314, 362, 379
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	9, 27, 96
MlyI	GAGTC	2 cut(s)	241, 389
MnlI	CCTC	2 cut(s)	346, 395
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	3 cut(s)	51, 150, 362
MwoI	GCNNNNNNNGC	2 cut(s)	115, 272
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	104, 181
PaqCI	CACCTGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	65, 383
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	240, 389
PpsI	GAGTC	2 cut(s)	240, 389
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	104, 181
PspPI	GGNCC	1 cut(s)	102
PspPPI	RGGWCCY	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	51, 150, 362
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	241, 389
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	9 cut(s)	51, 82, 133, 214, 228, 259, 277, 330, 357
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	3 cut(s)	9, 27, 96
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	259
TasI	AATT	3 cut(s)	9, 27, 96
TfiI	GAWTC	2 cut(s)	65, 383
Tru1I	TTAA	3 cut(s)	51, 150, 362
Tru9I	TTAA	3 cut(s)	51, 150, 362
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.