Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006356

Physical Location & Seq

Genomic Coordinates Forward (+)

16779188 .. 16780363

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCTTGATGTCCTTCGTCCCCAAGTCGAAGTTCAGTTCAAATCATGGGGTTCCTGCATTCCGGGTGGTGGGAACACAGTTCCTGGAGAGCGTCTCAGTGAAGTCACTGTAATGTTGAGAGCCAAGTTAAAAAATTACCTACAGGCAGTTGTTGAAAAACTTGCGGAGAATTCAAAGTTGCAGAGTGCTACAAAACTGAAGAAGATTCTCCAAGATTCGAAGGAAACCGTGGTAGAATCTGATGTGAGAAGTAGAATGCAGCTTCTGAAAGACCAGCTGACAACCACAGTTAATCACCTGCATACTGTGTTCGGGACTCAAGTCTTCATTGCAATTTGTCGAGGTTATTGGGACCGAATGGGACAGGATGTTCTGAGTTTCTTAGAGAACCGAAAAGAAAACAAATCATGGTATAAGGGTTCGCGTATTGCTGTCTCTATTCTGGATGATACATTTGCATCACAGATGCAGCAGTTGTTGGGAAATGCATTGCAGGAGAAAGACCTGGAGCCTCCTAGATCAATCATGGAAGTCCGGTCGATGCTTTGCAAGGATGCGGCTAATAACAAGGACAATACCTATTACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.32

Weight (kDa)

8.93

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24610 AT4G24610 AT4G24610 AT4G24610
fragaria_vesca	FvH4_5g35670 FvH4_5g35670
malus_domestica	MD08G1194200.v1.1 MD15G1382300.v1.1
prunus_persica	Prupe.1G528500_v2.0.a1
pyrus_communis	pycom08g16710 pycom08g16720 pycom15g34240
rosa_chinensis	RchiOBHm_Chr7g0237261
rosa_laevigata	RLG00000001014 RLG00000001019
rosa_multiflora	Rmu_co8497497.1_g000001 Rmu_sc0002923.1_g000046 Rmu_sc0027723.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224340
rosa_rugosa	Rorug07G0302600
rosa_samantha	Rh2BG240700 Rh7AG459400 Rh7BG429500 Rh7CG476800 Rh7DG446000
rosa_wichuraiana	Rw7G038050 Rw7G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	306
AccII	CGCG	1 cut(s)	424
AciI	CCGC	2 cut(s)	164, 557
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	40, 155, 174
AjnI	CCWGG	2 cut(s)	82, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	2 cut(s)	262, 277
AluI	AGCT	2 cut(s)	262, 277
Alw26I	GTCTC	2 cut(s)	98, 439
AlwNI	CAGNNNCTG	2 cut(s)	83, 265
ApeKI	GCWGC	2 cut(s)	259, 469
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	271, 481
BciT130I	CCWGG	2 cut(s)	84, 506
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	98, 439
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	3 cut(s)	260, 470, 558
BlsI	GCNGC	3 cut(s)	261, 471, 559
Bme1390I	CCNGG	3 cut(s)	63, 84, 506
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	3 cut(s)	52, 353, 510
BmrFI	CCNGG	3 cut(s)	63, 84, 506
BmsI	GCATC	4 cut(s)	456, 467, 531, 544
BoxI	GACNNNNGTC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpmI	CTGGAG	2 cut(s)	105, 527
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse3DI	GCAATG	2 cut(s)	327, 488
BseBI	CCWGG	2 cut(s)	84, 506
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	373, 451, 559
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	2 cut(s)	327, 488
BseMII	CTCAG	2 cut(s)	109, 365
BseXI	GCAGC	2 cut(s)	271, 481
Bsh1236I	CGCG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	62, 535
BslFI	GGGAC	4 cut(s)	3, 328, 365, 375
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	98, 439
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	4 cut(s)	3, 328, 365, 375
BsmI	GAATGC	2 cut(s)	57, 261
Bsp119I	TTCGAA	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	518
BspACI	CCGC	2 cut(s)	164, 557
BspCNI	CTCAG	2 cut(s)	108, 366
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	52, 353, 510
BspMI	ACCTGC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	327, 488
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	518
Bst2UI	CCWGG	2 cut(s)	84, 506
Bst4CI	ACNGT	5 cut(s)	79, 109, 229, 289, 307
BstBI	TTCGAA	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	95, 374, 382
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	373, 451, 559
BstFNI	CGCG	1 cut(s)	424
BstKTI	GATC	1 cut(s)	521
BstMAI	GTCTC	2 cut(s)	98, 439
BstMBI	GATC	1 cut(s)	518
BstMCI	CGRYCG	1 cut(s)	539
BstNI	CCWGG	2 cut(s)	84, 506
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	61, 82, 504
BstSFI	CTRYAG	1 cut(s)	140
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	271, 481
BstV2I	GAAGAC	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	373, 451, 559
BtsIMutI	CAGTG	2 cut(s)	103, 105
BveI	ACCTGC	1 cut(s)	306
CaiI	CAGNNNCTG	2 cut(s)	83, 265
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	1 cut(s)	80
CviAII	CATG	3 cut(s)	45, 408, 526
CviJI	RGCY	5 cut(s)	122, 262, 277, 511, 560
CviKI_1	RGCY	5 cut(s)	122, 262, 277, 511, 560
DdeI	CTNAG	3 cut(s)	95, 374, 382
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	82, 504
EcoT22I	ATGCAT	1 cut(s)	490
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	48, 411, 529
FaiI	YATR	5 cut(s)	46, 303, 409, 414, 527
FaqI	GGGAC	4 cut(s)	3, 328, 365, 375
FatI	CATG	3 cut(s)	44, 407, 525
Fnu4HI	GCNGC	3 cut(s)	260, 470, 558
FokI	GGATG	3 cut(s)	380, 458, 566
Fsp4HI	GCNGC	3 cut(s)	260, 470, 558
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	3 cut(s)	260, 470, 558
GsuI	CTGGAG	2 cut(s)	105, 527
HapII	CCGG	2 cut(s)	62, 535
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	48, 411, 529
HinfI	GANTC	4 cut(s)	205, 215, 236, 316
HpaII	CCGG	2 cut(s)	62, 535
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	3 cut(s)	241, 267, 375
Hpy188III	TCNNGA	2 cut(s)	313, 443
HpyAV	CCTTC	2 cut(s)	23, 214
HpyCH4III	ACNGT	5 cut(s)	79, 109, 229, 289, 307
HpyF3I	CTNAG	3 cut(s)	95, 374, 382
Hsp92II	CATG	3 cut(s)	48, 411, 529
Kzo9I	GATC	1 cut(s)	518
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	2 cut(s)	271, 481
LweI	GCATC	4 cut(s)	456, 467, 531, 544
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	3 cut(s)	211, 214, 316
MluCI	AATT	3 cut(s)	133, 169, 333
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	2 cut(s)	335, 522
Mph1103I	ATGCAT	1 cut(s)	490
MseI	TTAA	2 cut(s)	128, 291
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	62, 535
MspR9I	CCNGG	3 cut(s)	63, 84, 506
Mva1269I	GAATGC	2 cut(s)	57, 261
MvaI	CCWGG	2 cut(s)	84, 506
MvnI	CGCG	1 cut(s)	424
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	518
NlaIII	CATG	3 cut(s)	48, 411, 529
NlaIV	GGNNCC	3 cut(s)	52, 353, 510
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	306
PctI	GAATGC	2 cut(s)	57, 261
PfeI	GAWTC	3 cut(s)	205, 215, 236
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	261, 471, 559
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PshAI	GACNNNNGTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	82, 504
PspGI	CCWGG	2 cut(s)	82, 504
PspN4I	GGNNCC	3 cut(s)	52, 353, 510
PspPI	GGNCC	1 cut(s)	352
PstNI	CAGNNNCTG	2 cut(s)	83, 265
PvuII	CAGCTG	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	128, 291
SatI	GCNGC	3 cut(s)	260, 470, 558
Sau3AI	GATC	1 cut(s)	518
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	63, 84, 506
SetI	ASST	7 cut(s)	141, 264, 279, 300, 346, 507, 581
SfaNI	GCATC	4 cut(s)	456, 467, 531, 544
SfcI	CTRYAG	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	3 cut(s)	133, 169, 333
SsiI	CCGC	2 cut(s)	164, 557
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	61, 82, 504
TaaI	ACNGT	5 cut(s)	79, 109, 229, 289, 307
TaqI	TCGA	4 cut(s)	27, 218, 340, 539
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	3 cut(s)	133, 169, 333
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	3 cut(s)	205, 215, 236
Tru1I	TTAA	2 cut(s)	128, 291
Tru9I	TTAA	2 cut(s)	128, 291
TscAI	CASTG	2 cut(s)	103, 112
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	259, 469
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	103, 112
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	1 cut(s)	516
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.