pycom15g34240

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
33901336 .. 33905555
4220 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34240.11

Sequence Viewer

Length: 1650 bp
ATGAAAGGCCATAACAAGAGCACGCTGAGTCACCAAGAGAACCGAATCTTAGGAGAAACTAAGGATCAGATTCAACAAACTCTTGCTCTAGCTTTCGAGAATTACAAGTCCTTGGATGAGTCATCACTTTCAGGAATTATGGAGGTCTTTCGACCTGCGACTGGGCATGCTGCACCTGCATTGGAGCCTGCTGTCAAACTTTACACGCTTCTTCATGATATCTTGTCTCCCGAGGCGCAGACTGCTTTATGCCACCATTTCCAGGTTGCTGCGAGAAAGAGATCACGGAGGCACTTAGCTGAGACAGATGAATATATTACTAGCAATAGCGATGGTATATTGCTTGATAGTTTGAGTATGGCGACTGCTTACCAGAAAATGAAATCTTTGTGCCTTAACATTAGGAATGAAATCCACACTGATATTGAGATCCATAATCAGCATATACTCCCCAGTTTTGTAGACCTCCCACATCTGTCAGCATCAATATACAGCACAGACCTATGCAGTAGATTGCGTGCTTTCCTCATTGCTTGCCCCCCAACGGGTCCTTCATCCCCTGTAGGAGACCTTGTTATAGCCACATCAGATTTCCAAAGAGACCTTTCCAGTTGGAACATCGGTCATATTAAAGCTGGCGTTGATGCAAAAGAATTGTTCCACCTCTATATTATGCTGTGGATTCAAAATAAGCGTGGATCTTTGCTCGAAGCATGCAAATTAGACAAGGTAAAATGGTCAGGAGTTAGGACACAGCATTCGACGACTCCTTTTGTGGATGAAATGTATGATCGTCTGAAAGCAACTTTGAGTGACTATGAGATCATCATTTCCAGATGGCCTGAATATGCCTGCATTCTGGAGAATGCTATTGCTGATGTCGAGAAGGCAATCATAGAATCTCTAGACAAGCAGTATGCAGACATCCTGTCACCATTAAAGGAAAATTTGGCCCCAAAGAAATTTGGCCTCAAGTATGTTCAGAAGCTTGCCAAAAGGTCTGTGAGCGCCTATACAGTCCCTGAAGAGTTGGGAATTCTGTTGAATTCGTTGAAGAGAATGCTTGATGTCCTTCGTCCCCAAATTGAAGTTCAGTTCAAATCATGGGGTTCCTGCATTCCGGATGGTGGGAACACAGTTCCTGGAGAGCGTCTCAGTGAAGTCACTGTAATGTTGAGAGCCAAGTTCAAAAATTACATACATGCAGTTGTTGAAAAACTTGCAGAGAATTCAAAGTTGCAGAGTGCTACAAAACTGAAGAAGATTCTGCAAGATTCAAAAGAAACCGTGGTAGAATCTGATGTGAGAAGTAGAATGCAGCTTCTGAAAGACCAGCTGGCAACCACAGTTACTCACCTGCATACTGTGTTTGGGACTCACGTCTTCATTGCAATTTGTCGAGGTTATTGGGACCGAATGGGACAGGATGTTCTGAGTTTCTTAGAGAACCGAAAAGAAAATAAGTCGTGGTATAAGGGTTCTCGCATTGCTGTCTCTATTCTGGATGATACATTTGCATCACAGATGCAGCAGCTGTTGGGGAACACACTGCAGGAGAAGGACGTGCAGCCTCCTAGATCCATAATGGAAGTCCGGTCTATTCTTTGCAAGGATGCTGCCAATCCGAAGGACAATACCTACTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

550

Amino Acids

62.05

Weight (kDa)

7.97

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 184, 1365
Acc36I ACCTGC 3 cut(s) 163, 184, 1365
AccI GTMKAC 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 1120
AclWI GGATC 4 cut(s) 72, 424, 706, 1572
AcsI RAATTY 5 cut(s) 946, 962, 1035, 1045, 1228
AcuI CTGAAG 2 cut(s) 1044, 1277
AfiI CCNNNNNNNGG 5 cut(s) 161, 262, 544, 545, 1127
AhdI GACNNNNNGTC 1 cut(s) 928
AjiI CACGTC 2 cut(s) 1381, 1564
AjnI CCWGG 2 cut(s) 261, 1141
AjuI GAANNNNNNNTTGG 4 cut(s) 535, 567, 1074, 1106
AloI GAACNNNNNNTCC 2 cut(s) 1413, 1445
AluBI AGCT 7 cut(s) 92, 299, 635, 988, 1321, 1336, 1534
AluI AGCT 7 cut(s) 92, 299, 635, 988, 1321, 1336, 1534
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 6 cut(s) 231, 296, 561, 594, 1157, 1498
AlwI GGATC 4 cut(s) 72, 424, 706, 1572
AlwNI CAGNNNCTG 4 cut(s) 1022, 1142, 1324, 1534
Ama87I CYCGRG 1 cut(s) 230
Aor13HI TCCGGA 1 cut(s) 1120
AoxI GGCC 4 cut(s) 7, 839, 951, 967
ApeKI GCWGC 7 cut(s) 170, 269, 1318, 1528, 1531, 1567, 1616
ApoI RAATTY 5 cut(s) 946, 962, 1035, 1045, 1228
ArsI GACNNNNNNTTYG 2 cut(s) 742, 774
AspLEI GCGC 2 cut(s) 238, 1010
AspS9I GGNCC 3 cut(s) 548, 952, 1411
AsuHPI GGTGA 3 cut(s) 23, 924, 1346
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 2 cut(s) 548, 1411
BbsI GAAGAC 1 cut(s) 1375
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 7 cut(s) 157, 256, 1330, 1540, 1543, 1579, 1603
BccI CCATC 3 cut(s) 326, 831, 1118
BciT130I CCWGG 2 cut(s) 263, 1143
BcoDI GTCTC 6 cut(s) 231, 296, 561, 594, 1157, 1498
BfaI CTAG 4 cut(s) 89, 321, 905, 1575
BfmI CTRYAG 2 cut(s) 561, 1550
BfoI RGCGCY 1 cut(s) 1011
BfuAI ACCTGC 3 cut(s) 163, 184, 1365
BisI GCNGC 7 cut(s) 171, 270, 1319, 1529, 1532, 1568, 1617
BlsI GCNGC 7 cut(s) 172, 271, 1320, 1530, 1533, 1569, 1618
Bme1390I CCNGG 2 cut(s) 263, 1143
Bme18I GGWCC 2 cut(s) 548, 1411
BmeRI GACNNNNNGTC 1 cut(s) 928
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 2 cut(s) 1381, 1564
BmgT120I GGNCC 3 cut(s) 548, 952, 1411
BmiI GGNNCC 5 cut(s) 186, 549, 954, 1111, 1412
BmrFI CCNGG 2 cut(s) 263, 1143
BmrI ACTGGG 2 cut(s) 171, 447
BmsI GCATC 5 cut(s) 491, 634, 1515, 1526, 1603
BmuI ACTGGG 2 cut(s) 171, 447
BoxI GACNNNNGTC 1 cut(s) 1379
BpiI GAAGAC 1 cut(s) 1375
BplI GAGNNNNNCTC 2 cut(s) 1137, 1169
BpmI CTGGAG 2 cut(s) 881, 1164
BpuEI CTTGAG 1 cut(s) 956
BsaI GGTCTC 2 cut(s) 561, 594
BsaJI CCNNGG 3 cut(s) 111, 231, 1287
BsaWI WCCGGW 2 cut(s) 1120, 1593
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 262, 544, 545, 1127
Bse1I ACTGG 3 cut(s) 166, 453, 609
Bse3DI GCAATG 3 cut(s) 528, 1386, 1485
BseAI TCCGGA 1 cut(s) 1120
BseBI CCWGG 2 cut(s) 263, 1143
BseDI CCNNGG 3 cut(s) 111, 231, 1287
BseGI GGATG 8 cut(s) 121, 554, 784, 924, 1129, 1432, 1510, 1618
BseLI CCNNNNNNNGG 5 cut(s) 161, 262, 544, 545, 1127
BseMI GCAATG 3 cut(s) 528, 1386, 1485
BseMII CTCAG 4 cut(s) 17, 291, 1168, 1424
BseNI ACTGG 3 cut(s) 166, 453, 609
BseXI GCAGC 7 cut(s) 157, 256, 1330, 1540, 1543, 1579, 1603
BsgI GTGCAG 2 cut(s) 156, 1586
BshFI GGCC 4 cut(s) 9, 841, 953, 969
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 1121, 1594
BslFI GGGAC 5 cut(s) 1004, 1062, 1387, 1424, 1434
BslI CCNNNNNNNGG 5 cut(s) 161, 262, 544, 545, 1127
BsmAI GTCTC 6 cut(s) 231, 296, 561, 594, 1157, 1498
BsmBI CGTCTC 1 cut(s) 1157
BsmFI GGGAC 5 cut(s) 1004, 1062, 1387, 1424, 1434
BsmI GAATGC 6 cut(s) 757, 855, 871, 1065, 1116, 1320
BsnI GGCC 4 cut(s) 9, 841, 953, 969
Bso31I GGTCTC 2 cut(s) 561, 594
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 1120
Bsp143I GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
BspANI GGCC 4 cut(s) 9, 841, 953, 969
BspCNI CTCAG 4 cut(s) 18, 292, 1167, 1425
BspEI TCCGGA 1 cut(s) 1120
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 5 cut(s) 186, 549, 954, 1111, 1412
BspMAI CTGCAG 1 cut(s) 1554
BspMI ACCTGC 3 cut(s) 163, 184, 1365
BspPI GGATC 4 cut(s) 72, 424, 706, 1572
BspTNI GGTCTC 2 cut(s) 561, 594
BsrDI GCAATG 3 cut(s) 528, 1386, 1485
BsrI ACTGG 3 cut(s) 166, 453, 609
BssECI CCNNGG 3 cut(s) 111, 231, 1287
BssMI GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 263, 1143
Bst4CI ACNGT 6 cut(s) 1018, 1138, 1168, 1288, 1348, 1366
Bst6I CTCTTC 2 cut(s) 1020, 1049
BstDEI CTNAG 8 cut(s) 26, 49, 60, 295, 300, 1154, 1433, 1441
BstDSI CCRYGG 1 cut(s) 1287
BstF5I GGATG 8 cut(s) 121, 554, 784, 924, 1129, 1432, 1510, 1618
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 2 cut(s) 238, 1010
BstKTI GATC 7 cut(s) 67, 284, 432, 701, 793, 825, 1580
BstMAI GTCTC 6 cut(s) 231, 296, 561, 594, 1157, 1498
BstMBI GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
BstMWI GCNNNNNNNGC 2 cut(s) 176, 242
BstNI CCWGG 2 cut(s) 263, 1143
BstNSI RCATGY 3 cut(s) 170, 717, 1205
BstPAI GACNNNNGTC 1 cut(s) 1379
BstSCI CCNGG 2 cut(s) 261, 1141
BstSFI CTRYAG 2 cut(s) 561, 1550
BstV1I GCAGC 7 cut(s) 157, 256, 1330, 1540, 1543, 1579, 1603
BstV2I GAAGAC 1 cut(s) 1375
BstX2I RGATCY 3 cut(s) 429, 698, 1577
BstYI RGATCY 3 cut(s) 429, 698, 1577
BsuRI GGCC 4 cut(s) 9, 841, 953, 969
BtgI CCRYGG 1 cut(s) 1287
BtgZI GCGATG 1 cut(s) 345
BtrI CACGTC 2 cut(s) 1381, 1564
BtsCI GGATG 8 cut(s) 121, 554, 784, 924, 1129, 1432, 1510, 1618
BtsI GCAGTG 1 cut(s) 1547
BtsIMutI CAGTG 4 cut(s) 417, 1162, 1164, 1547
BveI ACCTGC 3 cut(s) 163, 184, 1365
CaiI CAGNNNCTG 4 cut(s) 1022, 1142, 1324, 1534
CciI TCATGA 1 cut(s) 214
CfoI GCGC 2 cut(s) 238, 1010
Cfr13I GGNCC 3 cut(s) 548, 952, 1411
CseI GACGC 1 cut(s) 1139
CviAII CATG 5 cut(s) 167, 215, 714, 1104, 1202
DdeI CTNAG 8 cut(s) 26, 49, 60, 295, 300, 1154, 1433, 1441
DpnI GATC 7 cut(s) 66, 283, 431, 700, 792, 824, 1579
DpnII GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
DriI GACNNNNNGTC 1 cut(s) 928
Eam1104I CTCTTC 2 cut(s) 1020, 1049
Eam1105I GACNNNNNGTC 1 cut(s) 928
EarI CTCTTC 2 cut(s) 1020, 1049
Eco130I CCWWGG 1 cut(s) 111
Eco31I GGTCTC 2 cut(s) 561, 594
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 548, 1411
Eco57I CTGAAG 2 cut(s) 1044, 1277
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 548
EcoRI GAATTC 3 cut(s) 1035, 1045, 1228
EcoRII CCWGG 2 cut(s) 261, 1141
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 1157
FaeI CATG 5 cut(s) 170, 218, 717, 1107, 1205
FaqI GGGAC 5 cut(s) 1004, 1062, 1387, 1424, 1434
FatI CATG 5 cut(s) 166, 214, 713, 1103, 1201
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 7 cut(s) 171, 270, 1319, 1529, 1532, 1568, 1617
FokI GGATG 8 cut(s) 128, 541, 791, 911, 1136, 1439, 1517, 1625
Fsp4HI GCNGC 7 cut(s) 171, 270, 1319, 1529, 1532, 1568, 1617
FspBI CTAG 4 cut(s) 89, 321, 905, 1575
GlaI GCGC 2 cut(s) 237, 1009
GluI GCNGC 7 cut(s) 171, 270, 1319, 1529, 1532, 1568, 1617
GsuI CTGGAG 2 cut(s) 881, 1164
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 4 cut(s) 9, 841, 953, 969
HapII CCGG 2 cut(s) 1121, 1594
HgaI GACGC 1 cut(s) 1139
HhaI GCGC 2 cut(s) 238, 1010
Hin1II CATG 5 cut(s) 170, 218, 717, 1107, 1205
Hin6I GCGC 2 cut(s) 236, 1008
HinP1I GCGC 2 cut(s) 236, 1008
HindIII AAGCTT 1 cut(s) 986
HpaII CCGG 2 cut(s) 1121, 1594
HphI GGTGA 3 cut(s) 23, 924, 1346
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 8 cut(s) 69, 589, 798, 984, 1300, 1326, 1434, 1626
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 1 cut(s) 766
HpyAV CCTTC 5 cut(s) 561, 880, 1082, 1552, 1621
HpyCH4III ACNGT 6 cut(s) 1018, 1138, 1168, 1288, 1348, 1366
HpyCH4IV ACGT 2 cut(s) 1380, 1563
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 242
HpyF3I CTNAG 8 cut(s) 26, 49, 60, 295, 300, 1154, 1433, 1441
HpySE526I ACGT 2 cut(s) 1380, 1563
Hsp92II CATG 5 cut(s) 170, 218, 717, 1107, 1205
HspAI GCGC 2 cut(s) 236, 1008
Kpn2I TCCGGA 1 cut(s) 1120
Kzo9I GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 7 cut(s) 157, 256, 1330, 1540, 1543, 1579, 1603
LweI GCATC 5 cut(s) 491, 634, 1515, 1526, 1603
MaeI CTAG 4 cut(s) 89, 321, 905, 1575
MaeII ACGT 2 cut(s) 1380, 1563
MaeIII GTNAC 5 cut(s) 29, 812, 930, 1162, 1348
MalI GATC 7 cut(s) 66, 283, 431, 700, 792, 824, 1579
MboI GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
MboII GAAGA 6 cut(s) 203, 1037, 1066, 1270, 1273, 1375
MflI RGATCY 3 cut(s) 429, 698, 1577
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 4 cut(s) 37, 128, 760, 1369
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 9 cut(s) 136, 226, 282, 476, 536, 674, 980, 1394, 1581
MroI TCCGGA 1 cut(s) 1120
MseI TTAA 3 cut(s) 396, 630, 938
MslI CAYNNNNRTG 1 cut(s) 1169
MspA1I CMGCKG 2 cut(s) 1336, 1534
MspI CCGG 2 cut(s) 1121, 1594
MspR9I CCNGG 2 cut(s) 263, 1143
Mva1269I GAATGC 6 cut(s) 757, 855, 871, 1065, 1116, 1320
MvaI CCWGG 2 cut(s) 263, 1143
MwoI GCNNNNNNNGC 2 cut(s) 176, 242
NdeII GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
NlaIII CATG 5 cut(s) 170, 218, 717, 1107, 1205
NlaIV GGNNCC 5 cut(s) 186, 549, 954, 1111, 1412
NmuCI GTSAC 4 cut(s) 29, 812, 930, 1162
NspI RCATGY 3 cut(s) 170, 717, 1205
PaeI GCATGC 2 cut(s) 170, 717
PagI TCATGA 1 cut(s) 214
PaqCI CACCTGC 2 cut(s) 184, 1365
PctI GAATGC 6 cut(s) 757, 855, 871, 1065, 1116, 1320
PfeI GAWTC 7 cut(s) 45, 70, 682, 899, 1264, 1274, 1295
PfoI TCCNGGA 1 cut(s) 1141
PkrI GCNGC 7 cut(s) 172, 271, 1320, 1530, 1533, 1569, 1618
PleI GAGTC 4 cut(s) 36, 127, 760, 1369
PpsI GAGTC 4 cut(s) 36, 127, 760, 1369
PpuMI RGGWCCY 1 cut(s) 548
PshAI GACNNNNGTC 1 cut(s) 1379
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 261, 1141
PspGI CCWGG 2 cut(s) 261, 1141
PspN4I GGNNCC 5 cut(s) 186, 549, 954, 1111, 1412
PspPI GGNCC 3 cut(s) 548, 952, 1411
PspPPI RGGWCCY 1 cut(s) 548
PstI CTGCAG 1 cut(s) 1554
PstNI CAGNNNCTG 4 cut(s) 1022, 1142, 1324, 1534
PsuI RGATCY 3 cut(s) 429, 698, 1577
PvuII CAGCTG 2 cut(s) 1336, 1534
RseI CAYNNNNRTG 1 cut(s) 1169
SaqAI TTAA 3 cut(s) 396, 630, 938
SatI GCNGC 7 cut(s) 171, 270, 1319, 1529, 1532, 1568, 1617
Sau3AI GATC 7 cut(s) 64, 281, 429, 698, 790, 822, 1577
Sau96I GGNCC 3 cut(s) 548, 952, 1411
SchI GAGTC 4 cut(s) 37, 128, 760, 1369
ScrFI CCNGG 2 cut(s) 263, 1143
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 5 cut(s) 491, 634, 1515, 1526, 1603
SfcI CTRYAG 2 cut(s) 561, 1550
SinI GGWCC 2 cut(s) 548, 1411
SmiMI CAYNNNNRTG 1 cut(s) 1169
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
SphI GCATGC 2 cut(s) 170, 717
SspMI CTAG 4 cut(s) 89, 321, 905, 1575
StyD4I CCNGG 2 cut(s) 261, 1141
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 6 cut(s) 1018, 1138, 1168, 1288, 1348, 1366
TaiI ACGT 2 cut(s) 1383, 1566
TaqI TCGA 6 cut(s) 96, 151, 708, 761, 882, 1399
TaqII GACCGA 2 cut(s) 611, 1428
TfiI GAWTC 7 cut(s) 45, 70, 682, 899, 1264, 1274, 1295
Tru1I TTAA 3 cut(s) 396, 630, 938
Tru9I TTAA 3 cut(s) 396, 630, 938
TscAI CASTG 4 cut(s) 424, 1162, 1171, 1554
TseFI GTSAC 4 cut(s) 29, 812, 930, 1162
TseI GCWGC 7 cut(s) 170, 269, 1318, 1528, 1531, 1567, 1616
Tsp45I GTSAC 4 cut(s) 29, 812, 930, 1162
TspDTI ATGAA 8 cut(s) 17, 203, 324, 395, 423, 543, 795, 1375
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 4 cut(s) 424, 1162, 1171, 1554
VpaK11BI GGWCC 2 cut(s) 548, 1411
XapI RAATTY 5 cut(s) 946, 962, 1035, 1045, 1228
XbaI TCTAGA 1 cut(s) 904
XceI RCATGY 3 cut(s) 170, 717, 1205
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 4 cut(s) 89, 321, 905, 1575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.