Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006356

Physical Location & Seq

Genomic Coordinates Forward (+)

9252480 .. 9255352

Gene Structure 2873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATTGAAATCAATATTCAGCATATACTCCCCAGATTGCGAGCTTTCCTCATTGCTTGCCCACCATCAGGCCCTTCACCTCCCGTAGCAGAACTTGTTATTGCCACAGCAGATTTTCAGAGGGACCTTGCCAGCTGGAACATCAGTCATATTAAAGCTGGAGTTGATGCAAAAGAATTGTTCCACCTATATATTATGCTGTGGATTCAAGATAAGCGCCAAAGTTTGCTCGAAGTATGCAAATTAGACAAGGTGAAATGGTCGGGAGTTAAGACACGACATTCGACAACTCCTTTTGTTGATGAAATGTATGAGCGTCTCAGAGGAACTTTGACTGACTATGAGGTCATCATTTGCCGATGGCCAGAATATACCCTTGTTTTGGAGAATGCTATTGCTGATGTTGAGAAGGCAATAGTAGAGTCCTTAGACAAGCAGTATGCAGATGTACTAGCTCCTTTGAAGGAAAATATGGGACCAAAGAAGTTTGGCCTTAAATATGTTCAGAAACTTGCCAAACGATCTGCGTGCTCATATACTGTTCCTGAAGAGCTTGGAATTCTGTTAAATTCGTTGAAGAGAATGCTTGATGTCCTCCGGCCCCAAATAGAAGTCCAATTCAGATCATGGGCTTCCTGTATGCCGGATGGTGGACAGTCAGCTCCTGGAGAGCGTCTTAGTGAAGTTACTGTAATGCTGAGAGCGAAGTTCAGAAACTACCTGCAAGCAGTTGTGGAAAAGCTGGCAGAGAATACAAAGTTGCAGAGTGCTACAAAGCTGAAAAAGATTCTACAAGATTCAAAGGAAACTGTGGTAGAATCTGATGTAAGAAGTAGAATGCAGCCTTTGAAAGACCAGCTCACAAGTACAATAAACCACCTCCACACAGGCCTTGAGACTCATGTCTTCATTGCAGTCTGCCGAGGTTATTGGGATCGAATGGGACAAGATGTGCTAAGTTTCTTGGAAAACCGAAAGGAAAATAGATCTTGGTACAAGGGCTCACGAGTTGCTGTCTCTGTTTTAGATGACACATTTGCATCACAGATGCAGCAGTTGTTGGGTAATGCACTGCTGGAGAAGGACCTGGAGGCCCCGAGATGCATTATGGAAGTCAGATCAATGCTGTGTAAGGACGCAGCCCATCAGAAGGACAACAGCTATTACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

391

Amino Acids

44.59

Weight (kDa)

8.48

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24610 AT4G24610 AT4G24610 AT4G24610
fragaria_vesca	FvH4_5g35670 FvH4_5g35670
malus_domestica	MD08G1194200.v1.1 MD15G1382300.v1.1
prunus_persica	Prupe.1G528500_v2.0.a1
pyrus_communis	pycom08g16710 pycom08g16720 pycom15g34240
rosa_chinensis	RchiOBHm_Chr7g0237261
rosa_laevigata	RLG00000001014 RLG00000001019
rosa_multiflora	Rmu_co8497497.1_g000001 Rmu_sc0002923.1_g000046 Rmu_sc0027723.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224340
rosa_rugosa	Rorug07G0302600
rosa_samantha	Rh2BG240700 Rh7AG459400 Rh7BG429500 Rh7CG476800 Rh7DG446000
rosa_wichuraiana	Rw7G038050 Rw7G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	729
AclWI	GGATC	1 cut(s)	942
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	2 cut(s)	558, 568
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	3 cut(s)	450, 868, 995
AfiI	CCNNNNNNNGG	4 cut(s)	68, 382, 650, 1150
AgsI	TTSAA	6 cut(s)	8, 209, 463, 577, 801, 850
AjnI	CCWGG	2 cut(s)	664, 1086
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	3 cut(s)	323, 890, 1021
AlwI	GGATC	1 cut(s)	942
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	1096
AoxI	GGCC	6 cut(s)	70, 362, 490, 599, 889, 1092
ApeKI	GCWGC	3 cut(s)	841, 1051, 1139
ApoI	RAATTY	2 cut(s)	558, 568
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	6 cut(s)	71, 124, 476, 600, 1084, 1093
AsuHPI	GGTGA	2 cut(s)	69, 265
AvaI	CYCGRG	1 cut(s)	1096
AvaII	GGWCC	3 cut(s)	124, 476, 1084
BalI	TGGCCA	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	1004
BauI	CACGAG	1 cut(s)	1005
BbsI	GAAGAC	1 cut(s)	898
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	3 cut(s)	853, 1063, 1151
BccI	CCATC	4 cut(s)	73, 354, 641, 1152
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	2 cut(s)	666, 1088
BcoDI	GTCTC	3 cut(s)	323, 890, 1021
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	220
BfuAI	ACCTGC	1 cut(s)	729
BglII	AGATCT	1 cut(s)	986
BisI	GCNGC	3 cut(s)	842, 1052, 1140
BlsI	GCNGC	3 cut(s)	843, 1053, 1141
Bme1390I	CCNGG	2 cut(s)	666, 1088
Bme18I	GGWCC	3 cut(s)	124, 476, 1084
BmeT110I	CYCGRG	1 cut(s)	1096
BmgT120I	GGNCC	6 cut(s)	71, 124, 476, 600, 1084, 1093
BmiI	GGNNCC	4 cut(s)	125, 477, 602, 1095
BmrFI	CCNGG	2 cut(s)	666, 1088
BmsI	GCATC	4 cut(s)	157, 1038, 1049, 1091
BoxI	GACNNNNGTC	1 cut(s)	902
BpiI	GAAGAC	1 cut(s)	898
BplI	GAGNNNNNCTC	2 cut(s)	33, 65
BpmI	CTGGAG	4 cut(s)	180, 687, 1097, 1109
BpuEI	CTTGAG	1 cut(s)	914
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	922
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 382, 650, 1150
Bse3DI	GCAATG	2 cut(s)	51, 909
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	666, 1088
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	1 cut(s)	652
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	4 cut(s)	68, 382, 650, 1150
BseMI	GCAATG	2 cut(s)	51, 909
BseMII	CTCAG	2 cut(s)	334, 689
BseXI	GCAGC	3 cut(s)	853, 1063, 1151
BshFI	GGCC	6 cut(s)	72, 364, 492, 601, 891, 1094
BsiHKAI	GWGCWC	1 cut(s)	533
BsiHKCI	CYCGRG	1 cut(s)	1096
BsiSI	CCGG	2 cut(s)	598, 644
BslFI	GGGAC	3 cut(s)	137, 489, 957
BslI	CCNNNNNNNGG	4 cut(s)	68, 382, 650, 1150
BsmAI	GTCTC	3 cut(s)	323, 890, 1021
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	3 cut(s)	137, 489, 957
BsmI	GAATGC	3 cut(s)	394, 588, 843
BsnI	GGCC	6 cut(s)	72, 364, 492, 601, 891, 1094
BsoBI	CYCGRG	1 cut(s)	1096
Bsp1286I	GDGCHC	2 cut(s)	533, 1004
Bsp143I	GATC	5 cut(s)	521, 623, 934, 986, 1118
BspANI	GGCC	6 cut(s)	72, 364, 492, 601, 891, 1094
BspCNI	CTCAG	2 cut(s)	333, 690
BspLI	GGNNCC	4 cut(s)	125, 477, 602, 1095
BspMI	ACCTGC	1 cut(s)	729
BspPI	GGATC	1 cut(s)	942
BspQI	GCTCTTC	1 cut(s)	543
BsrDI	GCAATG	2 cut(s)	51, 909
BssECI	CCNNGG	1 cut(s)	922
BssMI	GATC	5 cut(s)	521, 623, 934, 986, 1118
BssSI	CACGAG	1 cut(s)	1005
Bst2BI	CACGAG	1 cut(s)	1005
Bst2UI	CCWGG	2 cut(s)	666, 1088
Bst4CI	ACNGT	4 cut(s)	541, 657, 691, 811
Bst6I	CTCTTC	2 cut(s)	543, 572
BstC8I	GCNNGC	6 cut(s)	42, 58, 133, 529, 726, 744
BstDEI	CTNAG	5 cut(s)	320, 427, 677, 698, 956
BstF5I	GGATG	1 cut(s)	652
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	5 cut(s)	524, 626, 937, 989, 1121
BstMAI	GTCTC	3 cut(s)	323, 890, 1021
BstMBI	GATC	5 cut(s)	521, 623, 934, 986, 1118
BstNI	CCWGG	2 cut(s)	666, 1088
BstPAI	GACNNNNGTC	1 cut(s)	902
BstSCI	CCNGG	2 cut(s)	664, 1086
BstV1I	GCAGC	3 cut(s)	853, 1063, 1151
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	986
BsuRI	GGCC	6 cut(s)	72, 364, 492, 601, 891, 1094
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	1070
BtsIMutI	CAGTG	1 cut(s)	1070
BveI	ACCTGC	1 cut(s)	729
Cac8I	GCNNGC	6 cut(s)	42, 58, 133, 529, 726, 744
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	6 cut(s)	71, 124, 476, 600, 1084, 1093
CseI	GACGC	3 cut(s)	305, 662, 1145
Csp6I	GTAC	3 cut(s)	449, 867, 994
CviAII	CATG	2 cut(s)	627, 902
CviQI	GTAC	3 cut(s)	449, 867, 994
DdeI	CTNAG	5 cut(s)	320, 427, 677, 698, 956
DpnI	GATC	5 cut(s)	523, 625, 936, 988, 1120
DpnII	GATC	5 cut(s)	521, 623, 934, 986, 1118
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	543, 572
EarI	CTCTTC	2 cut(s)	543, 572
Eco147I	AGGCCT	1 cut(s)	891
Eco24I	GRGCYC	1 cut(s)	1004
Eco47I	GGWCC	3 cut(s)	124, 476, 1084
Eco57I	CTGAAG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	1096
EcoO109I	RGGNCCY	4 cut(s)	71, 124, 1084, 1093
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	664, 1086
EcoT22I	ATGCAT	1 cut(s)	1106
EcoT38I	GRGCYC	1 cut(s)	1004
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	2 cut(s)	630, 905
FaqI	GGGAC	3 cut(s)	137, 489, 957
FatI	CATG	2 cut(s)	626, 901
Fnu4HI	GCNGC	3 cut(s)	842, 1052, 1140
FokI	GGATG	1 cut(s)	659
FriOI	GRGCYC	1 cut(s)	1004
Fsp4HI	GCNGC	3 cut(s)	842, 1052, 1140
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	842, 1052, 1140
GsuI	CTGGAG	4 cut(s)	180, 687, 1097, 1109
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	6 cut(s)	72, 364, 492, 601, 891, 1094
HapII	CCGG	2 cut(s)	598, 644
HgaI	GACGC	3 cut(s)	305, 662, 1145
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	630, 905
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	6 cut(s)	205, 422, 787, 797, 818, 898
HpaII	CCGG	2 cut(s)	598, 644
HphI	GGTGA	2 cut(s)	69, 265
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188I	TCNGA	8 cut(s)	120, 323, 507, 623, 713, 823, 1118, 1149
Hpy188III	TCNNGA	4 cut(s)	209, 264, 545, 1005
Hpy8I	GTNNAC	1 cut(s)	653
HpyAV	CCTTC	5 cut(s)	84, 403, 457, 1075, 1144
HpyCH4III	ACNGT	4 cut(s)	541, 657, 691, 811
HpyF3I	CTNAG	5 cut(s)	320, 427, 677, 698, 956
Hsp92II	CATG	2 cut(s)	630, 905
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	521, 623, 934, 986, 1118
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	460, 667
Lsp1109I	GCAGC	3 cut(s)	853, 1063, 1151
LweI	GCATC	4 cut(s)	157, 1038, 1049, 1091
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	5 cut(s)	523, 625, 936, 988, 1120
MboI	GATC	5 cut(s)	521, 623, 934, 986, 1118
MboII	GAAGA	3 cut(s)	560, 589, 898
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	2 cut(s)	533, 1004
MlsI	TGGCCA	1 cut(s)	364
MluCI	AATT	5 cut(s)	176, 242, 558, 568, 617
MluNI	TGGCCA	1 cut(s)	364
MlyI	GAGTC	2 cut(s)	431, 892
MnlI	CCTC	9 cut(s)	59, 90, 114, 317, 337, 605, 890, 917, 1084
Mox20I	TGGCCA	1 cut(s)	364
Mph1103I	ATGCAT	1 cut(s)	1106
MscI	TGGCCA	1 cut(s)	364
MseI	TTAA	4 cut(s)	153, 270, 495, 566
Msp20I	TGGCCA	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	2 cut(s)	598, 644
MspR9I	CCNGG	2 cut(s)	666, 1088
Mva1269I	GAATGC	3 cut(s)	394, 588, 843
MvaI	CCWGG	2 cut(s)	666, 1088
NdeII	GATC	5 cut(s)	521, 623, 934, 986, 1118
NlaIII	CATG	2 cut(s)	630, 905
NlaIV	GGNNCC	4 cut(s)	125, 477, 602, 1095
NmeAIII	GCCGAG	1 cut(s)	947
NsiI	ATGCAT	1 cut(s)	1106
PceI	AGGCCT	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	543
PctI	GAATGC	3 cut(s)	394, 588, 843
PfeI	GAWTC	4 cut(s)	205, 787, 797, 818
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	3 cut(s)	843, 1053, 1141
PleI	GAGTC	2 cut(s)	430, 892
PpsI	GAGTC	2 cut(s)	430, 892
PpuMI	RGGWCCY	2 cut(s)	124, 1084
PshAI	GACNNNNGTC	1 cut(s)	902
Psp5II	RGGWCCY	2 cut(s)	124, 1084
Psp6I	CCWGG	2 cut(s)	664, 1086
PspGI	CCWGG	2 cut(s)	664, 1086
PspN4I	GGNNCC	4 cut(s)	125, 477, 602, 1095
PspPI	GGNCC	6 cut(s)	71, 124, 476, 600, 1084, 1093
PspPPI	RGGWCCY	2 cut(s)	124, 1084
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	986
PvuII	CAGCTG	1 cut(s)	135
RsaI	GTAC	3 cut(s)	450, 868, 995
RsaNI	GTAC	3 cut(s)	449, 867, 994
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	4 cut(s)	153, 270, 495, 566
SatI	GCNGC	3 cut(s)	842, 1052, 1140
Sau3AI	GATC	5 cut(s)	521, 623, 934, 986, 1118
Sau96I	GGNCC	6 cut(s)	71, 124, 476, 600, 1084, 1093
SchI	GAGTC	2 cut(s)	431, 892
ScrFI	CCNGG	2 cut(s)	666, 1088
SduI	GDGCHC	2 cut(s)	533, 1004
SfaNI	GCATC	4 cut(s)	157, 1038, 1049, 1091
SinI	GGWCC	3 cut(s)	124, 476, 1084
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	5 cut(s)	176, 242, 558, 568, 617
SseBI	AGGCCT	1 cut(s)	891
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	452
StuI	AGGCCT	1 cut(s)	891
StyD4I	CCNGG	2 cut(s)	664, 1086
TaaI	ACNGT	4 cut(s)	541, 657, 691, 811
TaqI	TCGA	3 cut(s)	231, 284, 937
TasI	AATT	5 cut(s)	176, 242, 558, 568, 617
TatI	WGTACW	2 cut(s)	448, 866
TfiI	GAWTC	4 cut(s)	205, 787, 797, 818
Tru1I	TTAA	4 cut(s)	153, 270, 495, 566
Tru9I	TTAA	4 cut(s)	153, 270, 495, 566
TscAI	CASTG	1 cut(s)	1077
TseI	GCWGC	3 cut(s)	841, 1051, 1139
TspDTI	ATGAA	2 cut(s)	318, 898
TspRI	CASTG	1 cut(s)	1077
VpaK11BI	GGWCC	3 cut(s)	124, 476, 1084
XapI	RAATTY	2 cut(s)	558, 568
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.