Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8497497.1

Orthogroup ID

OG0006356

Physical Location & Seq

Genomic Coordinates Reverse (-)

1825 .. 2740

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8497497.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgaagtgcatgctagatgtcatgtggccgaaaatagaagctaagtttgagtcttggatgccttggatcactgatgatggatacaccaggggagaacatctcaacgatgtaattgtacacctgagaaccaaatatagaaattaccgacgagcaattgtggagaagcttgcaaagaatgctagagtccaggcagcaacaaagttgaagaacattatgcgagactcaaaggacgtggaatcagaggtccgaagtagaatgcagcctttagaggatcttttgcgaaaggaaatagatcatctcagtactgttgccaatcctactgtgtgcgtagaactctgccaggtattttgggacaggacaggacaggatgtcctgcgtctcttggaatataggaggagcaggtcctggtacaaaggcctacatgtcgcagtatctatcctggatgacatatttggctcggaaatgcaaagactgtgcaggacttcattgaaagaaaaagacatggcgccacccgaatcaataaaggaagtacattccattcttgatcatgatgctgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.96

Weight (kDa)

8.32

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24610 AT4G24610 AT4G24610 AT4G24610
fragaria_vesca	FvH4_5g35670 FvH4_5g35670
malus_domestica	MD08G1194200.v1.1 MD15G1382300.v1.1
prunus_persica	Prupe.1G528500_v2.0.a1
pyrus_communis	pycom08g16710 pycom08g16720 pycom15g34240
rosa_chinensis	RchiOBHm_Chr7g0237261
rosa_laevigata	RLG00000001014 RLG00000001019
rosa_multiflora	Rmu_co8497497.1_g000001 Rmu_sc0002923.1_g000046 Rmu_sc0027723.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224340
rosa_rugosa	Rorug07G0302600
rosa_samantha	Rh2BG240700 Rh7AG459400 Rh7BG429500 Rh7CG476800 Rh7DG446000
rosa_wichuraiana	Rw7G038050 Rw7G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	505
AclWI	GGATC	2 cut(s)	74, 279
AcoI	YGGCCR	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	4 cut(s)	117, 304, 410, 531
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	205, 490
AhdI	GACNNNNNGTC	1 cut(s)	368
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	5 cut(s)	86, 186, 339, 404, 438
AluBI	AGCT	2 cut(s)	41, 166
AluI	AGCT	2 cut(s)	41, 166
Alw26I	GTCTC	2 cut(s)	213, 383
AlwI	GGATC	2 cut(s)	74, 279
AlwNI	CAGNNNCTG	1 cut(s)	405
AoxI	GGCC	2 cut(s)	26, 415
ApeKI	GCWGC	3 cut(s)	191, 259, 554
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	244, 402
AvaII	GGWCC	2 cut(s)	244, 402
BanI	GGYRCC	1 cut(s)	505
BbvI	GCAGC	3 cut(s)	203, 271, 541
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	5 cut(s)	88, 188, 341, 406, 440
BciVI	GTATCC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	213, 383
BfaI	CTAG	2 cut(s)	14, 180
BfoI	RGCGCY	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	74
BisI	GCNGC	3 cut(s)	192, 260, 555
BlsI	GCNGC	3 cut(s)	193, 261, 556
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	5 cut(s)	88, 188, 341, 406, 440
Bme18I	GGWCC	2 cut(s)	244, 402
BmeRI	GACNNNNNGTC	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	244, 402
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	5 cut(s)	88, 188, 341, 406, 440
BmsI	GCATC	2 cut(s)	48, 541
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	62, 87
BseBI	CCWGG	5 cut(s)	88, 188, 341, 406, 440
BseDI	CCNNGG	2 cut(s)	62, 87
BseGI	GGATG	3 cut(s)	63, 373, 448
BseMII	CTCAG	2 cut(s)	113, 313
BseRI	GAGGAG	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	203, 271, 541
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	28, 417
BshNI	GGYRCC	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	365
BsmAI	GTCTC	2 cut(s)	213, 383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	2 cut(s)	181, 261
BsnI	GGCC	2 cut(s)	28, 417
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	4 cut(s)	66, 271, 292, 544
BspANI	GGCC	2 cut(s)	28, 417
BspCNI	CTCAG	2 cut(s)	114, 312
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	507
BspMI	ACCTGC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	74, 279
BspT107I	GGYRCC	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	62, 87
BssMI	GATC	4 cut(s)	66, 271, 292, 544
BssNI	GRCGYC	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	62
Bst2UI	CCWGG	5 cut(s)	88, 188, 341, 406, 440
Bst4CI	ACNGT	3 cut(s)	307, 322, 474
BstACI	GRCGYC	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	11, 168
BstDEI	CTNAG	3 cut(s)	42, 122, 299
BstF5I	GGATG	3 cut(s)	63, 373, 448
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	4 cut(s)	69, 274, 295, 547
BstMAI	GTCTC	2 cut(s)	213, 383
BstMBI	GATC	4 cut(s)	66, 271, 292, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	5 cut(s)	88, 188, 341, 406, 440
BstNSI	RCATGY	2 cut(s)	13, 425
BstSCI	CCNGG	5 cut(s)	86, 186, 339, 404, 438
BstV1I	GCAGC	3 cut(s)	203, 271, 541
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	28, 417
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	63, 373, 448
BtsIMutI	CAGTG	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	11, 168
CaiI	CAGNNNCTG	1 cut(s)	405
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	244, 402
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	4 cut(s)	116, 303, 409, 530
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	5 cut(s)	10, 22, 422, 502, 548
CviJI	RGCY	6 cut(s)	28, 41, 166, 262, 417, 456
CviKI_1	RGCY	6 cut(s)	28, 41, 166, 262, 417, 456
CviQI	GTAC	4 cut(s)	116, 303, 409, 530
DdeI	CTNAG	3 cut(s)	42, 122, 299
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	4 cut(s)	68, 273, 294, 546
DpnII	GATC	4 cut(s)	66, 271, 292, 544
DriI	GACNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	26
Eam1105I	GACNNNNNGTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	244, 402
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRII	CCWGG	5 cut(s)	86, 186, 339, 404, 438
EcoT14I	CCWWGG	1 cut(s)	62
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	5 cut(s)	13, 25, 425, 505, 551
FaiI	YATR	9 cut(s)	11, 23, 135, 215, 390, 423, 449, 503, 549
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	5 cut(s)	9, 21, 421, 501, 547
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	192, 260, 555
FokI	GGATG	3 cut(s)	70, 380, 455
Fsp4HI	GCNGC	3 cut(s)	192, 260, 555
FspBI	CTAG	2 cut(s)	14, 180
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	3 cut(s)	192, 260, 555
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	28, 417
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	5 cut(s)	13, 25, 425, 505, 551
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	50, 183, 221, 236, 515
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	241, 248, 460
Hpy188III	TCNNGA	2 cut(s)	542, 548
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4III	ACNGT	3 cut(s)	307, 322, 474
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	9, 170, 259, 466, 477, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	42, 122, 299
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	5 cut(s)	13, 25, 425, 505, 551
HspAI	GCGC	1 cut(s)	506
KasI	GGCGCC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	66, 271, 292, 544
LmnI	GCTCC	1 cut(s)	396
Lsp1109I	GCAGC	3 cut(s)	203, 271, 541
LweI	GCATC	2 cut(s)	48, 541
MaeI	CTAG	2 cut(s)	14, 180
MaeII	ACGT	1 cut(s)	231
MalI	GATC	4 cut(s)	68, 273, 294, 546
MboI	GATC	4 cut(s)	66, 271, 292, 544
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	4 cut(s)	111, 139, 153, 558
Mly113I	GGCGCC	1 cut(s)	506
MlyI	GAGTC	3 cut(s)	59, 192, 215
MnlI	CCTC	3 cut(s)	235, 262, 387
MspR9I	CCNGG	5 cut(s)	88, 188, 341, 406, 440
MunI	CAATTG	1 cut(s)	153
Mva1269I	GAATGC	2 cut(s)	181, 261
MvaI	CCWGG	5 cut(s)	88, 188, 341, 406, 440
MwoI	GCNNNNNNNGC	1 cut(s)	176
NarI	GGCGCC	1 cut(s)	506
NdeII	GATC	4 cut(s)	66, 271, 292, 544
NlaIII	CATG	5 cut(s)	13, 25, 425, 505, 551
NlaIV	GGNNCC	1 cut(s)	507
NspI	RCATGY	2 cut(s)	13, 425
PaeI	GCATGC	1 cut(s)	13
PagI	TCATGA	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	417
PciI	ACATGT	1 cut(s)	421
PctI	GAATGC	2 cut(s)	181, 261
PfeI	GAWTC	2 cut(s)	236, 515
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	193, 261, 556
PleI	GAGTC	3 cut(s)	58, 191, 215
PluTI	GGCGCC	1 cut(s)	509
PpsI	GAGTC	3 cut(s)	58, 191, 215
PpuMI	RGGWCCY	1 cut(s)	402
PscI	ACATGT	1 cut(s)	421
Psp5II	RGGWCCY	1 cut(s)	402
Psp6I	CCWGG	5 cut(s)	86, 186, 339, 404, 438
PspGI	CCWGG	5 cut(s)	86, 186, 339, 404, 438
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	2 cut(s)	244, 402
PspPPI	RGGWCCY	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	4 cut(s)	117, 304, 410, 531
RsaNI	GTAC	4 cut(s)	116, 303, 409, 530
SatI	GCNGC	3 cut(s)	192, 260, 555
Sau3AI	GATC	4 cut(s)	66, 271, 292, 544
Sau96I	GGNCC	2 cut(s)	244, 402
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	3 cut(s)	59, 192, 215
ScrFI	CCNGG	5 cut(s)	88, 188, 341, 406, 440
SetI	ASST	7 cut(s)	43, 123, 168, 234, 246, 345, 404
SfaNI	GCATC	2 cut(s)	48, 541
SfoI	GGCGCC	1 cut(s)	507
SinI	GGWCC	2 cut(s)	244, 402
SphI	GCATGC	1 cut(s)	13
Sse9I	AATT	4 cut(s)	111, 139, 153, 558
SseBI	AGGCCT	1 cut(s)	417
SspDI	GGCGCC	1 cut(s)	505
SspMI	CTAG	2 cut(s)	14, 180
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	5 cut(s)	86, 186, 339, 404, 438
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	3 cut(s)	307, 322, 474
TaiI	ACGT	1 cut(s)	234
TasI	AATT	4 cut(s)	111, 139, 153, 558
TatI	WGTACW	3 cut(s)	115, 302, 529
TfiI	GAWTC	2 cut(s)	236, 515
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	3 cut(s)	191, 259, 554
TspDTI	ATGAA	2 cut(s)	17, 474
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	2 cut(s)	244, 402
XceI	RCATGY	2 cut(s)	13, 425
XspI	CTAG	2 cut(s)	14, 180
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.