Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006356

Physical Location & Seq

Genomic Coordinates Reverse (-)

24024552 .. 24025524

Gene Structure 973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG240700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCTTTTTTTTTTTTGGTTCTTCTCTTTTTCCAGGTAGGAATTGTTTTCAACTCCATGAAGTGCATGCTAGATGTCATGTGGCCGAAAATAGAAGCTAAGTTTGAGTCTTGGATGCCTTGGATCACTGATGATGGATACACCAGGGGAGAACATCTCAACGATGTAATTGTACACCTGAGAACCAAATATAGAAATTACCGACGAGCAATTGTGGAGAAGCTTGCAAAGAATGCTAGAGTCCAGGCAGCAACAAAGTTGAAGAACATTATGCGAGACTCAAAGGACGTGGAATCAGAGGTCCGAAGTAGAATGCAGCCTTTAGAGGATCTTTTGCGAAAGGAAATAGATCATCTCAGTACTGTTGCCAATCCTACTGTGTGCGTAGAACTCTGCCAGGTATTTTGGGACAGGACAGGACAGGATGTCCTGCGTCTCTTGGAATATAGGAGAAGCAGGTCCTGGTACAAAGGCCTACGTGTCGCAGTTTCTATCCTGGATGACATATTTGGCTCGGAAATGCAAAGACTGTGCAGGACTTCATTGAAAGAAAAAGACATGGCGCCACCCGAATCAATAAAGGAAGTACATTCCATTCTTGATCATGATGCTGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

24.21

Weight (kDa)

8.64

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24610 AT4G24610 AT4G24610 AT4G24610
fragaria_vesca	FvH4_5g35670 FvH4_5g35670
malus_domestica	MD08G1194200.v1.1 MD15G1382300.v1.1
prunus_persica	Prupe.1G528500_v2.0.a1
pyrus_communis	pycom08g16710 pycom08g16720 pycom15g34240
rosa_chinensis	RchiOBHm_Chr7g0237261
rosa_laevigata	RLG00000001014 RLG00000001019
rosa_multiflora	Rmu_co8497497.1_g000001 Rmu_sc0002923.1_g000046 Rmu_sc0027723.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224340
rosa_rugosa	Rorug07G0302600
rosa_samantha	Rh2BG240700 Rh7AG459400 Rh7BG429500 Rh7CG476800 Rh7DG446000
rosa_wichuraiana	Rw7G038050 Rw7G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	562
AclWI	GGATC	2 cut(s)	131, 336
AcoI	YGGCCR	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	563
AfaI	GTAC	4 cut(s)	174, 361, 467, 588
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	52, 262, 547
AhdI	GACNNNNNGTC	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	6 cut(s)	33, 143, 243, 396, 461, 495
AluBI	AGCT	2 cut(s)	98, 223
AluI	AGCT	2 cut(s)	98, 223
Alw26I	GTCTC	2 cut(s)	270, 440
AlwI	GGATC	2 cut(s)	131, 336
AlwNI	CAGNNNCTG	1 cut(s)	462
AoxI	GGCC	2 cut(s)	83, 472
ApeKI	GCWGC	3 cut(s)	248, 316, 611
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	301, 459
AvaII	GGWCC	2 cut(s)	301, 459
BanI	GGYRCC	1 cut(s)	562
BbvI	GCAGC	3 cut(s)	260, 328, 598
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	6 cut(s)	35, 145, 245, 398, 463, 497
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	2 cut(s)	270, 440
BfaI	CTAG	2 cut(s)	71, 237
BfoI	RGCGCY	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	3 cut(s)	249, 317, 612
BlsI	GCNGC	3 cut(s)	250, 318, 613
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	6 cut(s)	35, 145, 245, 398, 463, 497
Bme18I	GGWCC	2 cut(s)	301, 459
BmeRI	GACNNNNNGTC	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	301, 459
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	6 cut(s)	35, 145, 245, 398, 463, 497
BmsI	GCATC	2 cut(s)	105, 598
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BsaAI	YACGTR	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	119, 144
BseBI	CCWGG	6 cut(s)	35, 145, 245, 398, 463, 497
BseDI	CCNNGG	2 cut(s)	119, 144
BseGI	GGATG	3 cut(s)	120, 430, 505
BseMII	CTCAG	2 cut(s)	170, 370
BseXI	GCAGC	3 cut(s)	260, 328, 598
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	2 cut(s)	85, 474
BshNI	GGYRCC	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	270, 440
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	2 cut(s)	238, 318
BsnI	GGCC	2 cut(s)	85, 474
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	123, 328, 349, 601
BspANI	GGCC	2 cut(s)	85, 474
BspCNI	CTCAG	2 cut(s)	171, 369
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	447
BspPI	GGATC	2 cut(s)	131, 336
BspT107I	GGYRCC	1 cut(s)	562
BsrGI	TGTACA	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	119, 144
BssMI	GATC	4 cut(s)	123, 328, 349, 601
BssNI	GRCGYC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	6 cut(s)	35, 145, 245, 398, 463, 497
Bst4CI	ACNGT	3 cut(s)	364, 379, 531
BstACI	GRCGYC	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	68, 225
BstDEI	CTNAG	3 cut(s)	99, 179, 356
BstF5I	GGATG	3 cut(s)	120, 430, 505
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	4 cut(s)	126, 331, 352, 604
BstMAI	GTCTC	2 cut(s)	270, 440
BstMBI	GATC	4 cut(s)	123, 328, 349, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	6 cut(s)	35, 145, 245, 398, 463, 497
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	6 cut(s)	33, 143, 243, 396, 461, 495
BstV1I	GCAGC	3 cut(s)	260, 328, 598
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	85, 474
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	120, 430, 505
BtsIMutI	CAGTG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	68, 225
CaiI	CAGNNNCTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	301, 459
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	4 cut(s)	173, 360, 466, 587
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	5 cut(s)	58, 67, 79, 559, 605
CviJI	RGCY	6 cut(s)	85, 98, 223, 319, 474, 513
CviKI_1	RGCY	6 cut(s)	85, 98, 223, 319, 474, 513
CviQI	GTAC	4 cut(s)	173, 360, 466, 587
DdeI	CTNAG	3 cut(s)	99, 179, 356
DinI	GGCGCC	1 cut(s)	564
DpnI	GATC	4 cut(s)	125, 330, 351, 603
DpnII	GATC	4 cut(s)	123, 328, 349, 601
DriI	GACNNNNNGTC	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	301, 459
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	6 cut(s)	33, 143, 243, 396, 461, 495
EcoT14I	CCWWGG	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	564
EheI	GGCGCC	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	5 cut(s)	61, 70, 82, 562, 608
FaiI	YATR	9 cut(s)	59, 68, 80, 192, 272, 447, 506, 560, 606
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	5 cut(s)	57, 66, 78, 558, 604
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	249, 317, 612
FokI	GGATG	3 cut(s)	127, 437, 512
Fsp4HI	GCNGC	3 cut(s)	249, 317, 612
FspBI	CTAG	2 cut(s)	71, 237
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	3 cut(s)	249, 317, 612
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	85, 474
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	1 cut(s)	565
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	5 cut(s)	61, 70, 82, 562, 608
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	5 cut(s)	107, 240, 278, 293, 572
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	298, 305, 517
Hpy188III	TCNNGA	2 cut(s)	599, 605
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	207
HpyCH4III	ACNGT	3 cut(s)	364, 379, 531
HpyCH4IV	ACGT	2 cut(s)	288, 478
HpyCH4V	TGCA	6 cut(s)	66, 227, 316, 523, 534, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	99, 179, 356
HpySE526I	ACGT	2 cut(s)	288, 478
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	5 cut(s)	61, 70, 82, 562, 608
HspAI	GCGC	1 cut(s)	563
KasI	GGCGCC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	4 cut(s)	123, 328, 349, 601
Lsp1109I	GCAGC	3 cut(s)	260, 328, 598
LweI	GCATC	2 cut(s)	105, 598
MaeI	CTAG	2 cut(s)	71, 237
MaeII	ACGT	2 cut(s)	288, 478
MalI	GATC	4 cut(s)	125, 330, 351, 603
MboI	GATC	4 cut(s)	123, 328, 349, 601
MboII	GAAGA	2 cut(s)	14, 274
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	5 cut(s)	42, 168, 196, 210, 615
Mly113I	GGCGCC	1 cut(s)	563
MlyI	GAGTC	3 cut(s)	116, 249, 272
MnlI	CCTC	2 cut(s)	292, 319
MspR9I	CCNGG	6 cut(s)	35, 145, 245, 398, 463, 497
MunI	CAATTG	1 cut(s)	210
Mva1269I	GAATGC	2 cut(s)	238, 318
MvaI	CCWGG	6 cut(s)	35, 145, 245, 398, 463, 497
MwoI	GCNNNNNNNGC	1 cut(s)	233
NarI	GGCGCC	1 cut(s)	563
NdeII	GATC	4 cut(s)	123, 328, 349, 601
NlaIII	CATG	5 cut(s)	61, 70, 82, 562, 608
NlaIV	GGNNCC	1 cut(s)	564
NspI	RCATGY	1 cut(s)	70
PaeI	GCATGC	1 cut(s)	70
PagI	TCATGA	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	474
PctI	GAATGC	2 cut(s)	238, 318
PfeI	GAWTC	2 cut(s)	293, 572
PfoI	TCCNGGA	1 cut(s)	495
PkrI	GCNGC	3 cut(s)	250, 318, 613
PleI	GAGTC	3 cut(s)	115, 248, 272
PluTI	GGCGCC	1 cut(s)	566
PpsI	GAGTC	3 cut(s)	115, 248, 272
Ppu21I	YACGTR	1 cut(s)	479
PpuMI	RGGWCCY	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	6 cut(s)	33, 143, 243, 396, 461, 495
PspGI	CCWGG	6 cut(s)	33, 143, 243, 396, 461, 495
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	301, 459
PspPPI	RGGWCCY	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	4 cut(s)	174, 361, 467, 588
RsaNI	GTAC	4 cut(s)	173, 360, 466, 587
SatI	GCNGC	3 cut(s)	249, 317, 612
Sau3AI	GATC	4 cut(s)	123, 328, 349, 601
Sau96I	GGNCC	2 cut(s)	301, 459
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	3 cut(s)	116, 249, 272
ScrFI	CCNGG	6 cut(s)	35, 145, 245, 398, 463, 497
SetI	ASST	9 cut(s)	39, 100, 180, 225, 291, 303, 402, 461, 481
SfaNI	GCATC	2 cut(s)	105, 598
SfoI	GGCGCC	1 cut(s)	564
SinI	GGWCC	2 cut(s)	301, 459
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	5 cut(s)	42, 168, 196, 210, 615
SseBI	AGGCCT	1 cut(s)	474
SspDI	GGCGCC	1 cut(s)	562
SspMI	CTAG	2 cut(s)	71, 237
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	6 cut(s)	33, 143, 243, 396, 461, 495
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	3 cut(s)	364, 379, 531
TaiI	ACGT	2 cut(s)	291, 481
TasI	AATT	5 cut(s)	42, 168, 196, 210, 615
TatI	WGTACW	3 cut(s)	172, 359, 586
TfiI	GAWTC	2 cut(s)	293, 572
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	3 cut(s)	248, 316, 611
TspDTI	ATGAA	2 cut(s)	74, 531
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	301, 459
XceI	RCATGY	1 cut(s)	70
XspI	CTAG	2 cut(s)	71, 237
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.