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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24610 AT4G24610 AT4G24610 AT4G24610 |
| fragaria_vesca | FvH4_5g35670 FvH4_5g35670 |
| malus_domestica | MD08G1194200.v1.1 MD15G1382300.v1.1 |
| prunus_persica | Prupe.1G528500_v2.0.a1 |
| pyrus_communis | pycom08g16710 pycom08g16720 pycom15g34240 |
| rosa_chinensis | RchiOBHm_Chr7g0237261 |
| rosa_laevigata | RLG00000001014 RLG00000001019 |
| rosa_multiflora | Rmu_co8497497.1_g000001 Rmu_sc0002923.1_g000046 Rmu_sc0027723.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00224340 |
| rosa_rugosa | Rorug07G0302600 |
| rosa_samantha | Rh2BG240700 Rh7AG459400 Rh7BG429500 Rh7CG476800 Rh7DG446000 |
| rosa_wichuraiana | Rw7G038050 Rw7G038070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2203 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2840 |
| Acc16I | TGCGCA | 1 cut(s) | 1439 |
| Acc36I | ACCTGC | 3 cut(s) | 1342, 2203, 3225 |
| AccB1I | GGYRCC | 1 cut(s) | 592 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 749 |
| AccI | GTMKAC | 3 cut(s) | 1277, 1330, 1923 |
| AccII | CGCG | 1 cut(s) | 891 |
| AciI | CCGC | 7 cut(s) | 152, 240, 314, 339, 380, 590, 1787 |
| AcoI | YGGCCR | 3 cut(s) | 172, 1624, 2858 |
| AcsI | RAATTY | 6 cut(s) | 161, 1987, 2097, 2355, 3054, 3064 |
| AcuI | CTGAAG | 5 cut(s) | 30, 291, 1083, 1249, 1530 |
| AcyI | GRCGYC | 1 cut(s) | 1245 |
| AfaI | GTAC | 8 cut(s) | 195, 404, 664, 1384, 2437, 2946, 3364, 3491 |
| AfeI | AGCGCT | 1 cut(s) | 1679 |
| AjiI | CACGTC | 2 cut(s) | 1355, 1555 |
| AjnI | CCWGG | 5 cut(s) | 214, 1534, 2280, 3160, 3582 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2085, 2117 |
| AleI | CACNNNNGTG | 1 cut(s) | 434 |
| Alw21I | GWGCWC | 6 cut(s) | 349, 545, 739, 916, 1027, 3029 |
| Alw26I | GTCTC | 8 cut(s) | 436, 1486, 1757, 2250, 2315, 2819, 3386, 3517 |
| Alw44I | GTGCAC | 1 cut(s) | 735 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3161 |
| Ama87I | CYCGRG | 3 cut(s) | 204, 631, 3592 |
| Aor51HI | AGCGCT | 1 cut(s) | 1679 |
| ApaLI | GTGCAC | 1 cut(s) | 735 |
| ApoI | RAATTY | 6 cut(s) | 161, 1987, 2097, 2355, 3054, 3064 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2761, 2793 |
| AseI | ATTAAT | 1 cut(s) | 2018 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2097 |
| AspA2I | CCTAGG | 1 cut(s) | 803 |
| AspLEI | GCGC | 6 cut(s) | 29, 1095, 1219, 1440, 1680, 2715 |
| AsuHPI | GGTGA | 6 cut(s) | 230, 303, 713, 764, 1556, 2761 |
| AsuNHI | GCTAGC | 1 cut(s) | 2107 |
| AvaI | CYCGRG | 3 cut(s) | 204, 631, 3592 |
| AvaII | GGWCC | 6 cut(s) | 237, 1868, 2083, 2620, 2972, 3580 |
| AvrII | CCTAGG | 1 cut(s) | 803 |
| AxyI | CCTNAGG | 1 cut(s) | 2250 |
| BaeGI | GKGCMC | 1 cut(s) | 739 |
| BalI | TGGCCA | 2 cut(s) | 174, 2860 |
| BamHI | GGATCC | 2 cut(s) | 86, 2365 |
| BanI | GGYRCC | 1 cut(s) | 592 |
| BanII | GRGCYC | 3 cut(s) | 545, 1194, 3500 |
| BauI | CACGAG | 1 cut(s) | 3501 |
| BbsI | GAAGAC | 3 cut(s) | 279, 1549, 3394 |
| Bbv12I | GWGCWC | 6 cut(s) | 349, 545, 739, 916, 1027, 3029 |
| BccI | CCATC | 9 cut(s) | 418, 460, 799, 1287, 2356, 2569, 2850, 3137, 3648 |
| BceAI | ACGGC | 3 cut(s) | 176, 1067, 1989 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1286, 1320, 3006, 3040 |
| BciT130I | CCWGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| BciVI | GTATCC | 1 cut(s) | 498 |
| BcoDI | GTCTC | 8 cut(s) | 436, 1486, 1757, 2250, 2315, 2819, 3386, 3517 |
| BfaI | CTAG | 6 cut(s) | 342, 795, 804, 2108, 2529, 2948 |
| BfmI | CTRYAG | 2 cut(s) | 695, 2382 |
| BfoI | RGCGCY | 3 cut(s) | 30, 1681, 2716 |
| BfuAI | ACCTGC | 3 cut(s) | 1342, 2203, 3225 |
| BfuI | GTATCC | 1 cut(s) | 498 |
| BglII | AGATCT | 1 cut(s) | 3482 |
| BlnI | CCTAGG | 1 cut(s) | 803 |
| BmcAI | AGTACT | 1 cut(s) | 664 |
| Bme1390I | CCNGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| Bme18I | GGWCC | 6 cut(s) | 237, 1868, 2083, 2620, 2972, 3580 |
| BmeT110I | CYCGRG | 3 cut(s) | 204, 631, 3592 |
| BmgBI | CACGTC | 2 cut(s) | 1355, 1555 |
| BmrFI | CCNGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| BmrI | ACTGGG | 3 cut(s) | 726, 2190, 2466 |
| BmsI | GCATC | 9 cut(s) | 937, 1907, 2510, 2653, 3534, 3545, 3587, 3609, 3622 |
| BmtI | GCTAGC | 1 cut(s) | 2111 |
| BmuI | ACTGGG | 3 cut(s) | 726, 2190, 2466 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3398 |
| BpiI | GAAGAC | 3 cut(s) | 279, 1549, 3394 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2529, 2561 |
| BpmI | CTGGAG | 6 cut(s) | 1208, 1443, 2676, 3183, 3593, 3605 |
| Bpu10I | CCTNAGC | 2 cut(s) | 759, 1220 |
| BpuEI | CTTGAG | 2 cut(s) | 1623, 3410 |
| Bsa29I | ATCGAT | 2 cut(s) | 422, 3617 |
| BsaAI | YACGTR | 1 cut(s) | 599 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1942 |
| BsaHI | GRCGYC | 1 cut(s) | 1245 |
| BsaJI | CCNNGG | 5 cut(s) | 513, 803, 923, 1871, 3418 |
| BsaWI | WCCGGW | 2 cut(s) | 100, 490 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 109, 139, 167, 197 |
| Bse118I | RCCGGY | 4 cut(s) | 154, 364, 2011, 2173 |
| Bse21I | CCTNAGG | 1 cut(s) | 2250 |
| Bse3DI | GCAATG | 4 cut(s) | 987, 2141, 2547, 3405 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1942 |
| BseBI | CCWGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| BseCI | ATCGAT | 2 cut(s) | 422, 3617 |
| BseDI | CCNNGG | 5 cut(s) | 513, 803, 923, 1871, 3418 |
| BseJI | GATNNNNATC | 1 cut(s) | 1942 |
| BseMI | GCAATG | 4 cut(s) | 987, 2141, 2547, 3405 |
| BseMII | CTCAG | 7 cut(s) | 558, 773, 1400, 2241, 2310, 2830, 3185 |
| BseRI | GAGGAG | 1 cut(s) | 585 |
| BseSI | GKGCMC | 1 cut(s) | 739 |
| BsgI | GTGCAG | 2 cut(s) | 659, 2175 |
| Bsh1236I | CGCG | 1 cut(s) | 891 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2174 |
| BshNI | GGYRCC | 1 cut(s) | 592 |
| BshVI | ATCGAT | 2 cut(s) | 422, 3617 |
| BsiEI | CGRYCG | 1 cut(s) | 2174 |
| BsiHKAI | GWGCWC | 6 cut(s) | 349, 545, 739, 916, 1027, 3029 |
| BsiHKCI | CYCGRG | 3 cut(s) | 204, 631, 3592 |
| BsiSI | CCGG | 8 cut(s) | 101, 155, 365, 491, 2012, 2174, 3094, 3140 |
| BslFI | GGGAC | 3 cut(s) | 2633, 2985, 3453 |
| BsmAI | GTCTC | 8 cut(s) | 436, 1486, 1757, 2250, 2315, 2819, 3386, 3517 |
| BsmBI | CGTCTC | 1 cut(s) | 2819 |
| BsmFI | GGGAC | 3 cut(s) | 2633, 2985, 3453 |
| BsmI | GAATGC | 4 cut(s) | 682, 2890, 3084, 3339 |
| BsoBI | CYCGRG | 3 cut(s) | 204, 631, 3592 |
| Bsp1286I | GDGCHC | 8 cut(s) | 349, 545, 739, 916, 1027, 1194, 3029, 3500 |
| Bsp19I | CCATGG | 2 cut(s) | 923, 1871 |
| BspACI | CCGC | 7 cut(s) | 152, 240, 314, 339, 380, 590, 1787 |
| BspCNI | CTCAG | 7 cut(s) | 557, 772, 1399, 2242, 2311, 2829, 3186 |
| BspDI | ATCGAT | 2 cut(s) | 422, 3617 |
| BspFNI | CGCG | 1 cut(s) | 891 |
| BspHI | TCATGA | 1 cut(s) | 2233 |
| BspMAI | CTGCAG | 1 cut(s) | 699 |
| BspMI | ACCTGC | 3 cut(s) | 1342, 2203, 3225 |
| BspOI | GCTAGC | 1 cut(s) | 2111 |
| BspQI | GCTCTTC | 1 cut(s) | 1071 |
| BspT107I | GGYRCC | 1 cut(s) | 592 |
| BsrDI | GCAATG | 4 cut(s) | 987, 2141, 2547, 3405 |
| BsrFI | RCCGGY | 4 cut(s) | 154, 364, 2011, 2173 |
| BssAI | RCCGGY | 4 cut(s) | 154, 364, 2011, 2173 |
| BssECI | CCNNGG | 5 cut(s) | 513, 803, 923, 1871, 3418 |
| BssNAI | GTATAC | 2 cut(s) | 1331, 1924 |
| BssNI | GRCGYC | 1 cut(s) | 1245 |
| BssSI | CACGAG | 1 cut(s) | 3501 |
| BssT1I | CCWWGG | 3 cut(s) | 803, 923, 1871 |
| Bst1107I | GTATAC | 2 cut(s) | 1331, 1924 |
| Bst2BI | CACGAG | 1 cut(s) | 3501 |
| Bst2UI | CCWGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| Bst6I | CTCTTC | 3 cut(s) | 829, 1071, 3068 |
| BstACI | GRCGYC | 1 cut(s) | 1245 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 947, 1652 |
| BstBAI | YACGTR | 1 cut(s) | 599 |
| BstDSI | CCRYGG | 2 cut(s) | 923, 1871 |
| BstFNI | CGCG | 1 cut(s) | 891 |
| BstH2I | RGCGCY | 3 cut(s) | 30, 1681, 2716 |
| BstHHI | GCGC | 6 cut(s) | 29, 1095, 1219, 1440, 1680, 2715 |
| BstMAI | GTCTC | 8 cut(s) | 436, 1486, 1757, 2250, 2315, 2819, 3386, 3517 |
| BstMCI | CGRYCG | 1 cut(s) | 2174 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 151, 344, 947, 1266, 1643, 1652, 2195 |
| BstNI | CCWGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| BstNSI | RCATGY | 3 cut(s) | 954, 1379, 2044 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3398 |
| BstSCI | CCNGG | 5 cut(s) | 214, 1534, 2280, 3160, 3582 |
| BstSFI | CTRYAG | 2 cut(s) | 695, 2382 |
| BstSLI | GKGCMC | 1 cut(s) | 739 |
| BstUI | CGCG | 1 cut(s) | 891 |
| BstV2I | GAAGAC | 3 cut(s) | 279, 1549, 3394 |
| BstX2I | RGATCY | 6 cut(s) | 86, 1538, 2300, 2365, 2448, 3482 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1009, 1878 |
| BstYI | RGATCY | 6 cut(s) | 86, 1538, 2300, 2365, 2448, 3482 |
| BstZ17I | GTATAC | 2 cut(s) | 1331, 1924 |
| Bsu15I | ATCGAT | 2 cut(s) | 422, 3617 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2250 |
| BsuI | GTATCC | 1 cut(s) | 498 |
| BsuTUI | ATCGAT | 2 cut(s) | 422, 3617 |
| BtgI | CCRYGG | 2 cut(s) | 923, 1871 |
| BtgZI | GCGATG | 1 cut(s) | 922 |
| BtrI | CACGTC | 2 cut(s) | 1355, 1555 |
| BtsI | GCAGTG | 2 cut(s) | 397, 3566 |
| BveI | ACCTGC | 3 cut(s) | 1342, 2203, 3225 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3161 |
| CciI | TCATGA | 1 cut(s) | 2233 |
| CfoI | GCGC | 6 cut(s) | 29, 1095, 1219, 1440, 1680, 2715 |
| Cfr10I | RCCGGY | 4 cut(s) | 154, 364, 2011, 2173 |
| ClaI | ATCGAT | 2 cut(s) | 422, 3617 |
| CseI | GACGC | 4 cut(s) | 947, 1253, 2801, 3158 |
| Csp6I | GTAC | 8 cut(s) | 194, 403, 663, 1383, 2436, 2945, 3363, 3490 |
| CviQI | GTAC | 8 cut(s) | 194, 403, 663, 1383, 2436, 2945, 3363, 3490 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2840 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2840 |
| EaeI | YGGCCR | 3 cut(s) | 172, 1624, 2858 |
| Eam1104I | CTCTTC | 3 cut(s) | 829, 1071, 3068 |
| EarI | CTCTTC | 3 cut(s) | 829, 1071, 3068 |
| Ecl136II | GAGCTC | 1 cut(s) | 543 |
| Eco130I | CCWWGG | 3 cut(s) | 803, 923, 1871 |
| Eco147I | AGGCCT | 1 cut(s) | 3387 |
| Eco24I | GRGCYC | 3 cut(s) | 545, 1194, 3500 |
| Eco47I | GGWCC | 6 cut(s) | 237, 1868, 2083, 2620, 2972, 3580 |
| Eco47III | AGCGCT | 1 cut(s) | 1679 |
| Eco53kI | GAGCTC | 1 cut(s) | 543 |
| Eco57I | CTGAAG | 5 cut(s) | 30, 291, 1083, 1249, 1530 |
| Eco81I | CCTNAGG | 1 cut(s) | 2250 |
| Eco88I | CYCGRG | 3 cut(s) | 204, 631, 3592 |
| EcoICRI | GAGCTC | 1 cut(s) | 543 |
| EcoO109I | RGGNCCY | 4 cut(s) | 2567, 2620, 3580, 3589 |
| EcoRI | GAATTC | 2 cut(s) | 2097, 3054 |
| EcoRII | CCWGG | 5 cut(s) | 214, 1534, 2280, 3160, 3582 |
| EcoT14I | CCWWGG | 3 cut(s) | 803, 923, 1871 |
| EcoT22I | ATGCAT | 2 cut(s) | 952, 3602 |
| EcoT38I | GRGCYC | 3 cut(s) | 545, 1194, 3500 |
| ErhI | CCWWGG | 3 cut(s) | 803, 923, 1871 |
| Esp3I | CGTCTC | 1 cut(s) | 2819 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 638, 670 |
| FaqI | GGGAC | 3 cut(s) | 2633, 2985, 3453 |
| FauI | CCCGC | 1 cut(s) | 159 |
| FauNDI | CATATG | 4 cut(s) | 943, 1369, 1456, 1801 |
| FblI | GTMKAC | 3 cut(s) | 1277, 1330, 1923 |
| FriOI | GRGCYC | 3 cut(s) | 545, 1194, 3500 |
| FspBI | CTAG | 6 cut(s) | 342, 795, 804, 2108, 2529, 2948 |
| FspI | TGCGCA | 1 cut(s) | 1439 |
| GlaI | GCGC | 6 cut(s) | 28, 1094, 1218, 1439, 1679, 2714 |
| GsuI | CTGGAG | 6 cut(s) | 1208, 1443, 2676, 3183, 3593, 3605 |
| HaeII | RGCGCY | 3 cut(s) | 30, 1681, 2716 |
| HapII | CCGG | 8 cut(s) | 101, 155, 365, 491, 2012, 2174, 3094, 3140 |
| HgaI | GACGC | 4 cut(s) | 947, 1253, 2801, 3158 |
| HhaI | GCGC | 6 cut(s) | 29, 1095, 1219, 1440, 1680, 2715 |
| Hin1I | GRCGYC | 1 cut(s) | 1245 |
| Hin6I | GCGC | 6 cut(s) | 27, 1093, 1217, 1438, 1678, 2713 |
| HinP1I | GCGC | 6 cut(s) | 27, 1093, 1217, 1438, 1678, 2713 |
| HpaII | CCGG | 8 cut(s) | 101, 155, 365, 491, 2012, 2174, 3094, 3140 |
| HphI | GGTGA | 6 cut(s) | 230, 303, 713, 764, 1556, 2761 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 737, 1049, 1278, 1331, 1924, 3149 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 737, 1049, 1278, 1331, 1924, 3149 |
| Hpy99I | CGWCG | 1 cut(s) | 722 |
| HpyCH4IV | ACGT | 3 cut(s) | 598, 1354, 1554 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 151, 344, 947, 1266, 1643, 1652, 2195 |
| HpySE526I | ACGT | 3 cut(s) | 598, 1354, 1554 |
| Hsp92I | GRCGYC | 1 cut(s) | 1245 |
| HspAI | GCGC | 6 cut(s) | 27, 1093, 1217, 1438, 1678, 2713 |
| KroI | GCCGGC | 1 cut(s) | 154 |
| KroNI | GCCGGC | 1 cut(s) | 156 |
| LguI | GCTCTTC | 1 cut(s) | 1071 |
| LmnI | GCTCC | 7 cut(s) | 24, 1003, 1129, 1189, 2203, 2956, 3163 |
| LweI | GCATC | 9 cut(s) | 937, 1907, 2510, 2653, 3534, 3545, 3587, 3609, 3622 |
| MaeI | CTAG | 6 cut(s) | 342, 795, 804, 2108, 2529, 2948 |
| MaeII | ACGT | 3 cut(s) | 598, 1354, 1554 |
| MaeIII | GTNAC | 4 cut(s) | 103, 454, 1426, 3181 |
| MflI | RGATCY | 6 cut(s) | 86, 1538, 2300, 2365, 2448, 3482 |
| MhlI | GDGCHC | 8 cut(s) | 349, 545, 739, 916, 1027, 1194, 3029, 3500 |
| MlsI | TGGCCA | 2 cut(s) | 174, 2860 |
| MluNI | TGGCCA | 2 cut(s) | 174, 2860 |
| MlyI | GAGTC | 6 cut(s) | 530, 1404, 1638, 1759, 2927, 3388 |
| Mox20I | TGGCCA | 2 cut(s) | 174, 2860 |
| Mph1103I | ATGCAT | 2 cut(s) | 952, 3602 |
| MroNI | GCCGGC | 1 cut(s) | 154 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2097 |
| MscI | TGGCCA | 2 cut(s) | 174, 2860 |
| MslI | CAYNNNNRTG | 4 cut(s) | 354, 434, 1526, 1876 |
| Msp20I | TGGCCA | 2 cut(s) | 174, 2860 |
| MspA1I | CMGCKG | 3 cut(s) | 1508, 1667, 2631 |
| MspI | CCGG | 8 cut(s) | 101, 155, 365, 491, 2012, 2174, 3094, 3140 |
| MspR9I | CCNGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| Mva1269I | GAATGC | 4 cut(s) | 682, 2890, 3084, 3339 |
| MvaI | CCWGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| MvnI | CGCG | 1 cut(s) | 891 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 151, 344, 947, 1266, 1643, 1652, 2195 |
| NaeI | GCCGGC | 1 cut(s) | 156 |
| NcoI | CCATGG | 2 cut(s) | 923, 1871 |
| NdeI | CATATG | 4 cut(s) | 943, 1369, 1456, 1801 |
| NgoMIV | GCCGGC | 1 cut(s) | 154 |
| NheI | GCTAGC | 1 cut(s) | 2107 |
| NmeAIII | GCCGAG | 3 cut(s) | 538, 1652, 3443 |
| NmuCI | GTSAC | 1 cut(s) | 454 |
| NsbI | TGCGCA | 1 cut(s) | 1439 |
| NsiI | ATGCAT | 2 cut(s) | 952, 3602 |
| NspI | RCATGY | 3 cut(s) | 954, 1379, 2044 |
| OliI | CACNNNNGTG | 1 cut(s) | 434 |
| PaeI | GCATGC | 1 cut(s) | 1379 |
| PaeR7I | CTCGAG | 1 cut(s) | 631 |
| PagI | TCATGA | 1 cut(s) | 2233 |
| PaqCI | CACCTGC | 1 cut(s) | 2203 |
| PceI | AGGCCT | 1 cut(s) | 3387 |
| PciSI | GCTCTTC | 1 cut(s) | 1071 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1312 |
| PctI | GAATGC | 4 cut(s) | 682, 2890, 3084, 3339 |
| PdiI | GCCGGC | 1 cut(s) | 156 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2097 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 749 |
| PfoI | TCCNGGA | 1 cut(s) | 3160 |
| PleI | GAGTC | 6 cut(s) | 529, 1404, 1637, 1759, 2926, 3388 |
| PpsI | GAGTC | 6 cut(s) | 529, 1404, 1637, 1759, 2926, 3388 |
| Ppu21I | YACGTR | 1 cut(s) | 599 |
| PpuMI | RGGWCCY | 2 cut(s) | 2620, 3580 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3398 |
| PshBI | ATTAAT | 1 cut(s) | 2018 |
| Psp124BI | GAGCTC | 1 cut(s) | 545 |
| Psp5II | RGGWCCY | 2 cut(s) | 2620, 3580 |
| Psp6I | CCWGG | 5 cut(s) | 214, 1534, 2280, 3160, 3582 |
| PspGI | CCWGG | 5 cut(s) | 214, 1534, 2280, 3160, 3582 |
| PspPPI | RGGWCCY | 2 cut(s) | 2620, 3580 |
| PspXI | VCTCGAGB | 1 cut(s) | 631 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 838, 870 |
| PstI | CTGCAG | 1 cut(s) | 699 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3161 |
| PsuI | RGATCY | 6 cut(s) | 86, 1538, 2300, 2365, 2448, 3482 |
| PvuII | CAGCTG | 3 cut(s) | 1508, 1667, 2631 |
| RsaI | GTAC | 8 cut(s) | 195, 404, 664, 1384, 2437, 2946, 3364, 3491 |
| RsaNI | GTAC | 8 cut(s) | 194, 403, 663, 1383, 2436, 2945, 3363, 3490 |
| RseI | CAYNNNNRTG | 4 cut(s) | 354, 434, 1526, 1876 |
| SacI | GAGCTC | 1 cut(s) | 545 |
| SapI | GCTCTTC | 1 cut(s) | 1071 |
| ScaI | AGTACT | 1 cut(s) | 664 |
| SchI | GAGTC | 6 cut(s) | 530, 1404, 1638, 1759, 2927, 3388 |
| ScrFI | CCNGG | 5 cut(s) | 216, 1536, 2282, 3162, 3584 |
| SduI | GDGCHC | 8 cut(s) | 349, 545, 739, 916, 1027, 1194, 3029, 3500 |
| SfaNI | GCATC | 9 cut(s) | 937, 1907, 2510, 2653, 3534, 3545, 3587, 3609, 3622 |
| SfcI | CTRYAG | 2 cut(s) | 695, 2382 |
| Sfr274I | CTCGAG | 1 cut(s) | 631 |
| SinI | GGWCC | 6 cut(s) | 237, 1868, 2083, 2620, 2972, 3580 |
| SlaI | CTCGAG | 1 cut(s) | 631 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 354, 434, 1526, 1876 |
| SmlI | CTYRAG | 3 cut(s) | 631, 1638, 3389 |
| SmoI | CTYRAG | 3 cut(s) | 631, 1638, 3389 |
| SphI | GCATGC | 1 cut(s) | 1379 |
| SseBI | AGGCCT | 1 cut(s) | 3387 |
| SsiI | CCGC | 7 cut(s) | 152, 240, 314, 339, 380, 590, 1787 |
| SspI | AATATT | 1 cut(s) | 2419 |
| SspMI | CTAG | 6 cut(s) | 342, 795, 804, 2108, 2529, 2948 |
| SstI | GAGCTC | 1 cut(s) | 545 |
| StuI | AGGCCT | 1 cut(s) | 3387 |
| StyD4I | CCNGG | 5 cut(s) | 214, 1534, 2280, 3160, 3582 |
| StyI | CCWWGG | 3 cut(s) | 803, 923, 1871 |
| TaiI | ACGT | 3 cut(s) | 601, 1357, 1557 |
| TaqI | TCGA | 8 cut(s) | 422, 632, 1252, 2170, 2727, 2780, 3433, 3617 |
| TatI | WGTACW | 4 cut(s) | 402, 662, 2944, 3362 |
| TauI | GCSGC | 1 cut(s) | 341 |
| TseFI | GTSAC | 1 cut(s) | 454 |
| Tsp45I | GTSAC | 1 cut(s) | 454 |
| TspGWI | ACGGA | 2 cut(s) | 473, 2423 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 749 |
| VneI | GTGCAC | 1 cut(s) | 735 |
| VpaK11BI | GGWCC | 6 cut(s) | 237, 1868, 2083, 2620, 2972, 3580 |
| VspI | ATTAAT | 1 cut(s) | 2018 |
| XapI | RAATTY | 6 cut(s) | 161, 1987, 2097, 2355, 3054, 3064 |
| XbaI | TCTAGA | 1 cut(s) | 794 |
| XceI | RCATGY | 3 cut(s) | 954, 1379, 2044 |
| XhoI | CTCGAG | 1 cut(s) | 631 |
| XmaJI | CCTAGG | 1 cut(s) | 803 |
| XmiI | GTMKAC | 3 cut(s) | 1277, 1330, 1923 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2097 |
| XspI | CTAG | 6 cut(s) | 342, 795, 804, 2108, 2529, 2948 |
| ZrmI | AGTACT | 1 cut(s) | 664 |
| Zsp2I | ATGCAT | 2 cut(s) | 952, 3602 |