Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006356

Physical Location & Seq

Genomic Coordinates Forward (+)

49186778 .. 49196309

Gene Structure 9532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG429500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3291 bp

ATGTTCACTGAAGGACTGGATAGGAGCGCCCTTCGTTGGGTTAGAGAGAAGAAGGAAGTTCCATTCTCTGCAACTTCCAATTTGGGATCCAGAATTGATCCGATTACACATATTCGGAGTGGTAGTGGAGGCAGAGGATTTGGGCTCCCCCCGCAGGCTAAATTTAGAAGTGGGCACTTGCCCTCCAATGCCATACCCGTTTCTCGGGCAATTCCTGGTGATGAGGATGAAAGTGGGTCTGCTTCTGATAATGACAGAACCACTGATTCAGAAGACGGCGTGTATGGGGGTAGATACTCACTGGATTCATCACCGCAAGATGAGAGGATTCCAAGTGCCGCTAGTGCTCATAGGTATGGGAAACCGTTGAATGGGCAACCACATTACGGCAGTGATTATATGTACTCGGATGTTAGTTCATCGATGGACACTGTTGTGGGGAGACAGAAGCCTGTGACGGAGAGGATGGCGAGGGGGAATGAGAGGTATCCGGTTGGGCAGAATGGTTATGCTGAGGATGAGTCATCTGATTCAGCTGCGAGCTCAGAGTTTTCTACTTCGCAAGCAGGAGGAGGAAGTATCAACAGTGCGGTGCCACGTAGTAGAGCTTATGCTTCGGAAGGATATGCCTCGAGTGTGCAGTCAAAGAGGAACTTGGGAAGTACTGCTGAAAAGGGTTTGCATTCCAGAAATCTGCAGAGTGAAAAGTTATCTGACGACGATGACGTTCCCAGTGCACCACCATTTTGTGGTGCAGCTCAGGAAATTAAACAGGACAATGAGAAAAGTCCATCTAGAATACCTAGGACACAACATACAACCTCTTCGTCAGACCAATTTGTAAGAACTACTGATACTTCCGAAGCTGCTGTGTCCTCATGTCCAGCTCGCGTTCCCACATTTTATGCAAGTGCTCTTGGGCCATGGCACGGTGTCATCGCATATGATGCATGTGTGCGTCTTTGCCTTCATGCTTGGGCAATGGAGTGCATGGAAGCTCCCATGTTTTTGGAAAATGAATGTGCTCTATTACGAGATTCATTTGGTTTACGGCAAGTGCTTTTACAATCAGAGGAAGAGCTGTTGGCGAAGCGCACTTCAGAGCTTGCCAGTGAGAAAGCTGCTCCAAAACCTAAGAAAATAGTTGGGAAGATGAAAGTGCAAGTGCGTAAAATTAAAGTGGGTCTGGAGCCCCCTACTGGATGTAGTATTACTGCACTAAGGCCACCAGTTATCAAACTGGACGCCATTCGATCTCGCTTCTCCAGCTTACAGTCTACAATCACTTCTGGATGGCAAGCCCTTCGGAACATTCGTGTTGCACCTCGTATACCTGCAAATGGTTCTTTTTCACGTCAAAGTCTGGCATATGTGCATGCTGGTACTCAGTATATAAAACAGGTGTCTGGACTCTTGAAAACTGGAGTAACTACACTGCGCAGCAGTTCGTCCTCATATGAAGTTGTGCAAGAAACGTACTCTTGTCTGTTGAGACTGAAAAGTTCAGCTGAAGAAGATGTCATCAAAATGCAAGCTGGATCTGGTGAAACTCACGTCTTCTTTCCAGAGAGTTTGGGAGATGAGCTAATAATTGAAGTCCTTGATTCAAAGGCAAAGCATTTTGGCCGAGTCCATGCTCAAGTGGCAACTATTGCTGATGATCCAGCTGACAAGCAGCGCTGGTTCTCTGTCTATCGCGAACCTGAACATGAGCTTGTAGGAAAGATACAGCTATCTGTATATTATTCAACAAGTTCAGATGAGACTCCCAAGTGTGGCTCGGTTGCGGAAACGGTGGCATATGACATTGTTTTAGAAGTTGCTATGAAGGTTCAGCATTTTCAACAAAGGAGTCTATTGTTGCATGGTCCATGGAAATGGCTTTTAACAGAGTTTGCATCATATTATGGCGTTTCTGATGTATACACCAAGCTAAGATACCTATCTTATGTTATGGATGTAGCAACACCAACAGCTGATTGCCTGAATTTGGTGTACGATTTGCTAAAGCCTGTATTAATGAAAGGCCACAATAAGAGCATGTTGAGTTTCCAAGAGAACCGTATATTAGGAGAAACTAAGGACCAAATAGAACGAATTCTTGGGCTAGCATTTGAGAACTATAAGTCCTTGGATGAATCATCTCTTTCGGGTATTATGGAGGTTTTTCGACCGGCTACTGGGCGTGCTGCACCTGCATTGGAGCCTGCTGTTAAACTTTTCACGCTTCTTCATGATGTCTTGTCTCCTGAGGTTCAGACTGCTTTATGCCACTATTTCCAGGTTGCTGCGAGAAAGAGATCCAGAAGGCATTTGACTGAGACTGATGAATATACTACAAACAACAGTGAAGGAATTCTGATGGATCCTTTGACTATTACTACAGCTTACCAGAAAATGAAATCCCTGTGCCTTAATATTAGGAATGAAATCCGTACTGATATTGAGATCCATAATCAGCATATACTCCCCAGTTTCATAGACCTCCCACATCTGGCAGCATCCATATACAGCACAGAGCTATGCGCTAGATTGCGAGCTTTCCTCATTGCTTGCCCACCATCAGGCCCTTCACCTCCCGTAGCAGAACTTGTTATTGCCACAGCAGATTTTCAGAGGGACCTTGCCGGCTGGAACATCAGTCATATTAAAGCTGGAGTTGATGCAAAAGAATTGTTCCACCTATATATTATGTTGTGGATTCAAGATAAGCGCCAAAGTTTGCTCGAAGTATGCAAATTAGACAAGGTGAAATGGTCGGGAGTTAAGACACGACATTCCACAACTCCTTTTGTTGATGAAATGTATGAGCGTATCAAAGGAACTTTGACTGACTATGAGGTCATCATTTGCCGATGGCCAGAATATACCCTTGTTTTGGAGAATGCTATTGCTGATGTTGAGAAGGCAATAGTAGAGTCCTTAGACAAGCAGTATGCAGATGTACTAGCTCCTTTGAAGGAAAATATGGGACCAAAGAAGTTTGGCCTTAAATATGTTCAGAAACTTGCCAAACGATCTGTGTGCTCCTATACTGTTCCTGACGAGCTTGGAATTATGTTAAATTCGTTGAAGAGAATGCTTGATGTCCTCCGGCCCCAAATAGAAGTCCAATTCAGATCATGGGCTTCCTGTATGCCGGATGGTGGACAGTCAGCTCCTGGAGAGCGTCTTAGTGAAGTTACTGTAATGCTGAGAGCAAAGTTCAGAAACTACCTCCAAGCAGTTGTGGAAAAGCTGGCAGAGAATGTGAGTGTCTTTCTGATGATGGCACATTTCTGGTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1096

Amino Acids

121.72

Weight (kDa)

6.72

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24610 AT4G24610 AT4G24610 AT4G24610
fragaria_vesca	FvH4_5g35670 FvH4_5g35670
malus_domestica	MD08G1194200.v1.1 MD15G1382300.v1.1
prunus_persica	Prupe.1G528500_v2.0.a1
pyrus_communis	pycom08g16710 pycom08g16720 pycom15g34240
rosa_chinensis	RchiOBHm_Chr7g0237261
rosa_laevigata	RLG00000001014 RLG00000001019
rosa_multiflora	Rmu_co8497497.1_g000001 Rmu_sc0002923.1_g000046 Rmu_sc0027723.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224340
rosa_rugosa	Rorug07G0302600
rosa_samantha	Rh2BG240700 Rh7AG459400 Rh7BG429500 Rh7CG476800 Rh7DG446000
rosa_wichuraiana	Rw7G038050 Rw7G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2203
AasI	GACNNNNNNGTC	1 cut(s)	2840
Acc16I	TGCGCA	1 cut(s)	1439
Acc36I	ACCTGC	2 cut(s)	1342, 2203
AccB1I	GGYRCC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccI	GTMKAC	3 cut(s)	1277, 1330, 1923
AccII	CGCG	2 cut(s)	891, 1698
AciI	CCGC	5 cut(s)	152, 314, 339, 590, 1787
AclWI	GGATC	9 cut(s)	81, 92, 94, 1546, 1655, 2295, 2360, 2373, 2443
AcoI	YGGCCR	2 cut(s)	1624, 2858
AcsI	RAATTY	5 cut(s)	161, 1987, 2097, 2355, 3064
AcuI	CTGAAG	3 cut(s)	30, 1083, 1530
AcyI	GRCGYC	1 cut(s)	1245
AfaI	GTAC	7 cut(s)	404, 664, 1384, 1478, 1997, 2437, 2946
AfeI	AGCGCT	1 cut(s)	1679
AjiI	CACGTC	2 cut(s)	1355, 1555
AjnI	CCWGG	3 cut(s)	214, 2280, 3160
AjuI	GAANNNNNNNTTGG	2 cut(s)	2085, 2117
AleI	CACNNNNGTG	1 cut(s)	434
AloI	GAACNNNNNNTCC	2 cut(s)	2111, 2143
Alw21I	GWGCWC	6 cut(s)	349, 545, 739, 916, 1027, 3029
Alw26I	GTCTC	5 cut(s)	436, 1486, 1757, 2250, 2315
Alw44I	GTGCAC	1 cut(s)	735
AlwI	GGATC	9 cut(s)	81, 92, 94, 1546, 1655, 2295, 2360, 2373, 2443
AlwNI	CAGNNNCTG	1 cut(s)	3161
Ama87I	CYCGRG	2 cut(s)	204, 631
Aor51HI	AGCGCT	1 cut(s)	1679
AoxI	GGCC	8 cut(s)	920, 1223, 1624, 2026, 2566, 2858, 2986, 3095
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	9 cut(s)	536, 755, 866, 1121, 1440, 1675, 2189, 2288, 2498
ApoI	RAATTY	5 cut(s)	161, 1987, 2097, 2355, 3064
AseI	ATTAAT	1 cut(s)	2018
Asp700I	GAANNNNTTC	2 cut(s)	2097, 2355
AspA2I	CCTAGG	1 cut(s)	803
AspLEI	GCGC	6 cut(s)	29, 1095, 1440, 1680, 2528, 2715
AspS9I	GGNCC	7 cut(s)	920, 1868, 2083, 2567, 2620, 2972, 3096
AsuHPI	GGTGA	5 cut(s)	230, 303, 1556, 2565, 2761
AsuNHI	GCTAGC	1 cut(s)	2107
AvaI	CYCGRG	2 cut(s)	204, 631
AvaII	GGWCC	4 cut(s)	1868, 2083, 2620, 2972
AvrII	CCTAGG	1 cut(s)	803
AxyI	CCTNAGG	1 cut(s)	2250
BaeGI	GKGCMC	2 cut(s)	177, 739
BalI	TGGCCA	1 cut(s)	2860
BamHI	GGATCC	2 cut(s)	86, 2365
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	3 cut(s)	147, 545, 1194
BbsI	GAAGAC	2 cut(s)	279, 1549
Bbv12I	GWGCWC	6 cut(s)	349, 545, 739, 916, 1027, 3029
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	9 cut(s)	523, 767, 853, 1108, 1452, 1687, 2176, 2275, 2510
BccI	CCATC	9 cut(s)	418, 460, 799, 1287, 2356, 2569, 2850, 3137, 3262
BceAI	ACGGC	3 cut(s)	292, 403, 1067
BcgI	CGANNNNNNTGC	4 cut(s)	1286, 1320, 3006, 3040
BciT130I	CCWGG	3 cut(s)	216, 2282, 3162
BciVI	GTATCC	1 cut(s)	498
BcoDI	GTCTC	5 cut(s)	436, 1486, 1757, 2250, 2315
BfaI	CTAG	6 cut(s)	342, 795, 804, 2108, 2529, 2948
BfmI	CTRYAG	2 cut(s)	695, 2382
BfoI	RGCGCY	3 cut(s)	30, 1681, 2716
BfuAI	ACCTGC	2 cut(s)	1342, 2203
BfuI	GTATCC	1 cut(s)	498
BlnI	CCTAGG	1 cut(s)	803
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	3 cut(s)	216, 2282, 3162
Bme18I	GGWCC	4 cut(s)	1868, 2083, 2620, 2972
BmeT110I	CYCGRG	2 cut(s)	204, 631
BmgBI	CACGTC	2 cut(s)	1355, 1555
BmgT120I	GGNCC	7 cut(s)	920, 1868, 2083, 2567, 2620, 2972, 3096
BmiI	GGNNCC	9 cut(s)	88, 146, 594, 1191, 2205, 2367, 2621, 2973, 3098
BmrFI	CCNGG	3 cut(s)	216, 2282, 3162
BmrI	ACTGGG	3 cut(s)	726, 2190, 2466
BmsI	GCATC	4 cut(s)	937, 1907, 2510, 2653
BmtI	GCTAGC	1 cut(s)	2111
BmuI	ACTGGG	3 cut(s)	726, 2190, 2466
BpiI	GAAGAC	2 cut(s)	279, 1549
BplI	GAGNNNNNCTC	2 cut(s)	2529, 2561
BpmI	CTGGAG	5 cut(s)	1208, 1249, 1443, 2676, 3183
Bpu10I	CCTNAGC	2 cut(s)	513, 759
BpuEI	CTTGAG	1 cut(s)	1623
Bsa29I	ATCGAT	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	1942
BsaHI	GRCGYC	1 cut(s)	1245
BsaJI	CCNNGG	4 cut(s)	803, 923, 1871, 2130
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 167, 197
Bse118I	RCCGGY	2 cut(s)	2173, 2627
Bse21I	CCTNAGG	1 cut(s)	2250
Bse3DI	GCAATG	2 cut(s)	987, 2547
Bse8I	GATNNNNATC	1 cut(s)	1942
BseBI	CCWGG	3 cut(s)	216, 2282, 3162
BseCI	ATCGAT	1 cut(s)	422
BseDI	CCNNGG	4 cut(s)	803, 923, 1871, 2130
BseJI	GATNNNNATC	1 cut(s)	1942
BseMI	GCAATG	2 cut(s)	987, 2547
BseMII	CTCAG	7 cut(s)	504, 558, 773, 1400, 2241, 2310, 3185
BseRI	GAGGAG	1 cut(s)	585
BseSI	GKGCMC	2 cut(s)	177, 739
BseXI	GCAGC	9 cut(s)	523, 767, 853, 1108, 1452, 1687, 2176, 2275, 2510
BsgI	GTGCAG	4 cut(s)	659, 774, 1200, 2175
Bsh1236I	CGCG	2 cut(s)	891, 1698
Bsh1285I	CGRYCG	1 cut(s)	2174
BshFI	GGCC	8 cut(s)	922, 1225, 1626, 2028, 2568, 2860, 2988, 3097
BshNI	GGYRCC	1 cut(s)	592
BshVI	ATCGAT	1 cut(s)	422
BsiEI	CGRYCG	1 cut(s)	2174
BsiHKAI	GWGCWC	6 cut(s)	349, 545, 739, 916, 1027, 3029
BsiHKCI	CYCGRG	2 cut(s)	204, 631
BsiSI	CCGG	5 cut(s)	491, 2174, 2628, 3094, 3140
BslFI	GGGAC	2 cut(s)	2633, 2985
BsmAI	GTCTC	5 cut(s)	436, 1486, 1757, 2250, 2315
BsmFI	GGGAC	2 cut(s)	2633, 2985
BsmI	GAATGC	3 cut(s)	682, 2890, 3084
BsnI	GGCC	8 cut(s)	922, 1225, 1626, 2028, 2568, 2860, 2988, 3097
BsoBI	CYCGRG	2 cut(s)	204, 631
Bsp1286I	GDGCHC	9 cut(s)	147, 177, 349, 545, 739, 916, 1027, 1194, 3029
Bsp19I	CCATGG	2 cut(s)	923, 1871
Bsp68I	TCGCGA	1 cut(s)	1698
BspACI	CCGC	5 cut(s)	152, 314, 339, 590, 1787
BspANI	GGCC	8 cut(s)	922, 1225, 1626, 2028, 2568, 2860, 2988, 3097
BspCNI	CTCAG	7 cut(s)	505, 557, 772, 1399, 2242, 2311, 3186
BspDI	ATCGAT	1 cut(s)	422
BspFNI	CGCG	2 cut(s)	891, 1698
BspHI	TCATGA	1 cut(s)	2233
BspLI	GGNNCC	9 cut(s)	88, 146, 594, 1191, 2205, 2367, 2621, 2973, 3098
BspMAI	CTGCAG	1 cut(s)	699
BspMI	ACCTGC	2 cut(s)	1342, 2203
BspOI	GCTAGC	1 cut(s)	2111
BspPI	GGATC	9 cut(s)	81, 92, 94, 1546, 1655, 2295, 2360, 2373, 2443
BspQI	GCTCTTC	1 cut(s)	1071
BspT107I	GGYRCC	1 cut(s)	592
BsrDI	GCAATG	2 cut(s)	987, 2547
BsrFI	RCCGGY	2 cut(s)	2173, 2627
BssAI	RCCGGY	2 cut(s)	2173, 2627
BssECI	CCNNGG	4 cut(s)	803, 923, 1871, 2130
BssNAI	GTATAC	2 cut(s)	1331, 1924
BssNI	GRCGYC	1 cut(s)	1245
BssT1I	CCWWGG	4 cut(s)	803, 923, 1871, 2130
Bst1107I	GTATAC	2 cut(s)	1331, 1924
Bst2UI	CCWGG	3 cut(s)	216, 2282, 3162
Bst6I	CTCTTC	3 cut(s)	829, 1071, 3068
BstACI	GRCGYC	1 cut(s)	1245
BstAPI	GCANNNNNTGC	2 cut(s)	947, 1652
BstBAI	YACGTR	1 cut(s)	599
BstDSI	CCRYGG	2 cut(s)	923, 1871
BstFNI	CGCG	2 cut(s)	891, 1698
BstH2I	RGCGCY	3 cut(s)	30, 1681, 2716
BstHHI	GCGC	6 cut(s)	29, 1095, 1440, 1680, 2528, 2715
BstMAI	GTCTC	5 cut(s)	436, 1486, 1757, 2250, 2315
BstMCI	CGRYCG	1 cut(s)	2174
BstMWI	GCNNNNNNNGC	7 cut(s)	151, 344, 947, 1266, 1643, 1652, 2195
BstNI	CCWGG	3 cut(s)	216, 2282, 3162
BstNSI	RCATGY	3 cut(s)	954, 1379, 2044
BstSCI	CCNGG	3 cut(s)	214, 2280, 3160
BstSFI	CTRYAG	2 cut(s)	695, 2382
BstSLI	GKGCMC	2 cut(s)	177, 739
BstUI	CGCG	2 cut(s)	891, 1698
BstV1I	GCAGC	9 cut(s)	523, 767, 853, 1108, 1452, 1687, 2176, 2275, 2510
BstV2I	GAAGAC	2 cut(s)	279, 1549
BstX2I	RGATCY	5 cut(s)	86, 1538, 2300, 2365, 2448
BstXI	CCANNNNNNTGG	2 cut(s)	1009, 1878
BstYI	RGATCY	5 cut(s)	86, 1538, 2300, 2365, 2448
BstZ17I	GTATAC	2 cut(s)	1331, 1924
Bsu15I	ATCGAT	1 cut(s)	422
Bsu36I	CCTNAGG	1 cut(s)	2250
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	8 cut(s)	922, 1225, 1626, 2028, 2568, 2860, 2988, 3097
BsuTUI	ATCGAT	1 cut(s)	422
BtgI	CCRYGG	2 cut(s)	923, 1871
BtgZI	GCGATG	1 cut(s)	922
BtrI	CACGTC	2 cut(s)	1355, 1555
BtsI	GCAGTG	2 cut(s)	397, 1433
BtuMI	TCGCGA	1 cut(s)	1698
BveI	ACCTGC	2 cut(s)	1342, 2203
CaiI	CAGNNNCTG	1 cut(s)	3161
CciI	TCATGA	1 cut(s)	2233
CfoI	GCGC	6 cut(s)	29, 1095, 1440, 1680, 2528, 2715
Cfr10I	RCCGGY	2 cut(s)	2173, 2627
Cfr13I	GGNCC	7 cut(s)	920, 1868, 2083, 2567, 2620, 2972, 3096
ClaI	ATCGAT	1 cut(s)	422
CseI	GACGC	3 cut(s)	947, 1253, 3158
Csp6I	GTAC	7 cut(s)	403, 663, 1383, 1477, 1996, 2436, 2945
CviQI	GTAC	7 cut(s)	403, 663, 1383, 1477, 1996, 2436, 2945
DrdI	GACNNNNNNGTC	1 cut(s)	2840
DseDI	GACNNNNNNGTC	1 cut(s)	2840
EaeI	YGGCCR	2 cut(s)	1624, 2858
Eam1104I	CTCTTC	3 cut(s)	829, 1071, 3068
EarI	CTCTTC	3 cut(s)	829, 1071, 3068
Ecl136II	GAGCTC	1 cut(s)	543
Eco130I	CCWWGG	4 cut(s)	803, 923, 1871, 2130
Eco24I	GRGCYC	3 cut(s)	147, 545, 1194
Eco47I	GGWCC	4 cut(s)	1868, 2083, 2620, 2972
Eco47III	AGCGCT	1 cut(s)	1679
Eco53kI	GAGCTC	1 cut(s)	543
Eco57I	CTGAAG	3 cut(s)	30, 1083, 1530
Eco81I	CCTNAGG	1 cut(s)	2250
Eco88I	CYCGRG	2 cut(s)	204, 631
EcoICRI	GAGCTC	1 cut(s)	543
EcoO109I	RGGNCCY	2 cut(s)	2567, 2620
EcoRI	GAATTC	2 cut(s)	2097, 2355
EcoRII	CCWGG	3 cut(s)	214, 2280, 3160
EcoT14I	CCWWGG	4 cut(s)	803, 923, 1871, 2130
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	3 cut(s)	147, 545, 1194
ErhI	CCWWGG	4 cut(s)	803, 923, 1871, 2130
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	2 cut(s)	2633, 2985
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	4 cut(s)	943, 1369, 1456, 1801
FblI	GTMKAC	3 cut(s)	1277, 1330, 1923
FriOI	GRGCYC	3 cut(s)	147, 545, 1194
FspBI	CTAG	6 cut(s)	342, 795, 804, 2108, 2529, 2948
FspI	TGCGCA	1 cut(s)	1439
GlaI	GCGC	6 cut(s)	28, 1094, 1439, 1679, 2527, 2714
GsuI	CTGGAG	5 cut(s)	1208, 1249, 1443, 2676, 3183
HaeII	RGCGCY	3 cut(s)	30, 1681, 2716
HaeIII	GGCC	8 cut(s)	922, 1225, 1626, 2028, 2568, 2860, 2988, 3097
HapII	CCGG	5 cut(s)	491, 2174, 2628, 3094, 3140
HgaI	GACGC	3 cut(s)	947, 1253, 3158
HhaI	GCGC	6 cut(s)	29, 1095, 1440, 1680, 2528, 2715
Hin1I	GRCGYC	1 cut(s)	1245
Hin6I	GCGC	6 cut(s)	27, 1093, 1438, 1678, 2526, 2713
HinP1I	GCGC	6 cut(s)	27, 1093, 1438, 1678, 2526, 2713
HpaII	CCGG	5 cut(s)	491, 2174, 2628, 3094, 3140
HphI	GGTGA	5 cut(s)	230, 303, 1556, 2565, 2761
Hpy166II	GTNNAC	8 cut(s)	6, 737, 1049, 1278, 1331, 1924, 1996, 3149
Hpy8I	GTNNAC	8 cut(s)	6, 737, 1049, 1278, 1331, 1924, 1996, 3149
Hpy99I	CGWCG	1 cut(s)	722
HpyCH4IV	ACGT	5 cut(s)	598, 726, 1354, 1475, 1554
HpyF10VI	GCNNNNNNNGC	7 cut(s)	151, 344, 947, 1266, 1643, 1652, 2195
HpySE526I	ACGT	5 cut(s)	598, 726, 1354, 1475, 1554
Hsp92I	GRCGYC	1 cut(s)	1245
HspAI	GCGC	6 cut(s)	27, 1093, 1438, 1678, 2526, 2713
KroI	GCCGGC	1 cut(s)	2627
KroNI	GCCGGC	1 cut(s)	2629
LguI	GCTCTTC	1 cut(s)	1071
LmnI	GCTCC	9 cut(s)	24, 150, 1003, 1129, 1189, 2203, 2956, 3032, 3163
Lsp1109I	GCAGC	9 cut(s)	523, 767, 853, 1108, 1452, 1687, 2176, 2275, 2510
LweI	GCATC	4 cut(s)	937, 1907, 2510, 2653
MaeI	CTAG	6 cut(s)	342, 795, 804, 2108, 2529, 2948
MaeII	ACGT	5 cut(s)	598, 726, 1354, 1475, 1554
MaeIII	GTNAC	3 cut(s)	454, 1426, 3181
MflI	RGATCY	5 cut(s)	86, 1538, 2300, 2365, 2448
MhlI	GDGCHC	9 cut(s)	147, 177, 349, 545, 739, 916, 1027, 1194, 3029
MlsI	TGGCCA	1 cut(s)	2860
MluNI	TGGCCA	1 cut(s)	2860
MlyI	GAGTC	6 cut(s)	530, 1404, 1638, 1759, 1861, 2927
Mox20I	TGGCCA	1 cut(s)	2860
Mph1103I	ATGCAT	1 cut(s)	952
MroNI	GCCGGC	1 cut(s)	2627
MroXI	GAANNNNTTC	2 cut(s)	2097, 2355
MscI	TGGCCA	1 cut(s)	2860
MslI	CAYNNNNRTG	4 cut(s)	354, 434, 1526, 1876
Msp20I	TGGCCA	1 cut(s)	2860
MspA1I	CMGCKG	4 cut(s)	536, 1508, 1667, 1976
MspI	CCGG	5 cut(s)	491, 2174, 2628, 3094, 3140
MspR9I	CCNGG	3 cut(s)	216, 2282, 3162
Mva1269I	GAATGC	3 cut(s)	682, 2890, 3084
MvaI	CCWGG	3 cut(s)	216, 2282, 3162
MvnI	CGCG	2 cut(s)	891, 1698
MwoI	GCNNNNNNNGC	7 cut(s)	151, 344, 947, 1266, 1643, 1652, 2195
NaeI	GCCGGC	1 cut(s)	2629
NcoI	CCATGG	2 cut(s)	923, 1871
NdeI	CATATG	4 cut(s)	943, 1369, 1456, 1801
NgoMIV	GCCGGC	1 cut(s)	2627
NheI	GCTAGC	1 cut(s)	2107
NlaIV	GGNNCC	9 cut(s)	88, 146, 594, 1191, 2205, 2367, 2621, 2973, 3098
NmeAIII	GCCGAG	1 cut(s)	1652
NmuCI	GTSAC	1 cut(s)	454
NruI	TCGCGA	1 cut(s)	1698
NsbI	TGCGCA	1 cut(s)	1439
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	3 cut(s)	954, 1379, 2044
OliI	CACNNNNGTG	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	1379
PaeR7I	CTCGAG	1 cut(s)	631
PagI	TCATGA	1 cut(s)	2233
PaqCI	CACCTGC	1 cut(s)	2203
PciSI	GCTCTTC	1 cut(s)	1071
PcsI	WCGNNNNNNNCGW	2 cut(s)	723, 1312
PctI	GAATGC	3 cut(s)	682, 2890, 3084
PdiI	GCCGGC	1 cut(s)	2629
PdmI	GAANNNNTTC	2 cut(s)	2097, 2355
PfeI	GAWTC	8 cut(s)	266, 305, 328, 530, 1037, 1604, 2138, 2701
PflMI	CCANNNNNTGG	1 cut(s)	749
PfoI	TCCNGGA	1 cut(s)	3160
PleI	GAGTC	6 cut(s)	529, 1404, 1637, 1759, 1860, 2926
PpsI	GAGTC	6 cut(s)	529, 1404, 1637, 1759, 1860, 2926
Ppu21I	YACGTR	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	2620
PshBI	ATTAAT	1 cut(s)	2018
Psp124BI	GAGCTC	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	2620
Psp6I	CCWGG	3 cut(s)	214, 2280, 3160
PspGI	CCWGG	3 cut(s)	214, 2280, 3160
PspN4I	GGNNCC	9 cut(s)	88, 146, 594, 1191, 2205, 2367, 2621, 2973, 3098
PspPI	GGNCC	7 cut(s)	920, 1868, 2083, 2567, 2620, 2972, 3096
PspPPI	RGGWCCY	1 cut(s)	2620
PspXI	VCTCGAGB	1 cut(s)	631
PsrI	GAACNNNNNNTAC	2 cut(s)	838, 870
PstI	CTGCAG	1 cut(s)	699
PstNI	CAGNNNCTG	1 cut(s)	3161
PsuI	RGATCY	5 cut(s)	86, 1538, 2300, 2365, 2448
PvuII	CAGCTG	4 cut(s)	536, 1508, 1667, 1976
RruI	TCGCGA	1 cut(s)	1698
RsaI	GTAC	7 cut(s)	404, 664, 1384, 1478, 1997, 2437, 2946
RsaNI	GTAC	7 cut(s)	403, 663, 1383, 1477, 1996, 2436, 2945
RseI	CAYNNNNRTG	4 cut(s)	354, 434, 1526, 1876
SacI	GAGCTC	1 cut(s)	545
SapI	GCTCTTC	1 cut(s)	1071
Sau96I	GGNCC	7 cut(s)	920, 1868, 2083, 2567, 2620, 2972, 3096
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	6 cut(s)	530, 1404, 1638, 1759, 1861, 2927
ScrFI	CCNGG	3 cut(s)	216, 2282, 3162
SduI	GDGCHC	9 cut(s)	147, 177, 349, 545, 739, 916, 1027, 1194, 3029
SfaNI	GCATC	4 cut(s)	937, 1907, 2510, 2653
SfcI	CTRYAG	2 cut(s)	695, 2382
Sfr274I	CTCGAG	1 cut(s)	631
SinI	GGWCC	4 cut(s)	1868, 2083, 2620, 2972
SlaI	CTCGAG	1 cut(s)	631
SmiMI	CAYNNNNRTG	4 cut(s)	354, 434, 1526, 1876
SmlI	CTYRAG	2 cut(s)	631, 1638
SmoI	CTYRAG	2 cut(s)	631, 1638
SphI	GCATGC	1 cut(s)	1379
SsiI	CCGC	5 cut(s)	152, 314, 339, 590, 1787
SspI	AATATT	1 cut(s)	2419
SspMI	CTAG	6 cut(s)	342, 795, 804, 2108, 2529, 2948
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	214, 2280, 3160
StyI	CCWWGG	4 cut(s)	803, 923, 1871, 2130
TaiI	ACGT	5 cut(s)	601, 729, 1357, 1478, 1557
TaqI	TCGA	5 cut(s)	422, 632, 1252, 2170, 2727
TatI	WGTACW	3 cut(s)	402, 662, 2944
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	8 cut(s)	266, 305, 328, 530, 1037, 1604, 2138, 2701
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	9 cut(s)	536, 755, 866, 1121, 1440, 1675, 2189, 2288, 2498
Tsp45I	GTSAC	1 cut(s)	454
TspGWI	ACGGA	2 cut(s)	473, 2423
Van91I	CCANNNNNTGG	1 cut(s)	749
VneI	GTGCAC	1 cut(s)	735
VpaK11BI	GGWCC	4 cut(s)	1868, 2083, 2620, 2972
VspI	ATTAAT	1 cut(s)	2018
XapI	RAATTY	5 cut(s)	161, 1987, 2097, 2355, 3064
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	3 cut(s)	954, 1379, 2044
XhoI	CTCGAG	1 cut(s)	631
XmaJI	CCTAGG	1 cut(s)	803
XmiI	GTMKAC	3 cut(s)	1277, 1330, 1923
XmnI	GAANNNNTTC	2 cut(s)	2097, 2355
XspI	CTAG	6 cut(s)	342, 795, 804, 2108, 2529, 2948
ZrmI	AGTACT	1 cut(s)	664
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.