Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027723.1

Orthogroup ID

OG0006356

Physical Location & Seq

Genomic Coordinates Reverse (-)

1174 .. 3739

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027723.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgaggctggtgcgctcggcatttggagtccgaaagatgaaatctttgcgaaaggaaaaggcggatatcgaaaagaagaagaagaagagggcgcttcggattcggattctagtcgagatgttgttcctagatcatcagctgtttgaacttccagatcccgaattattcttctctgcgcaagagttattgggtcagaatgtaggggcagacgaggagattgataatggtcatggaggaactttgactgattatgaggtcatcatttgccgatggccagaatatacccttgttttggagaatgctattgctgatattgagaaggcaatagtagagtccttagacaagcagtatgcagatgtactagctcctttgaaggaaaatatgggaccaaagaagtttggccttaaatatgttcagaaacttgccaaacgatctgtgtgctcatatactgttcctgacgagcttggaattctgttaaattcgttgaagagaatgcttgatgtcctccggccccaaatagaagtccaattcagatcatgggcttcctgtatgctggatggtggacagtcagctcctggagagcgtcttagtgaagttactgtaatgctgagagcgaagttcagaaactacttgcaagcagttgtggaaaagctggcagagaatacaaagttgcagagtgctacaaagctgaaaaagattctacaagattcaaaggaaactgtggtggaatctgatgtaagaagtagaatgcagcctttgaaagaccagctcacaagtacaataaaccacctccacacaggccttgagactcatgtcttcattgcagtctgccgaggttattgggatcgaatgggacaagatgtgctaagtttcttggaaaaccgaaaggaaaatagatcttggtacaagggctcacgagttgctgtctctgttttagatgacacatttgcatcacagatgcagcagttgttgggtaatgcgctgctggagaaggacctggaggcccccagatgcattatggaagtcagatcgatgctgtgtaaggatgcagcccatcagaaggacaacagctattacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

41.26

Weight (kDa)

8.71

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24610 AT4G24610 AT4G24610 AT4G24610
fragaria_vesca	FvH4_5g35670 FvH4_5g35670
malus_domestica	MD08G1194200.v1.1 MD15G1382300.v1.1
prunus_persica	Prupe.1G528500_v2.0.a1
pyrus_communis	pycom08g16710 pycom08g16720 pycom15g34240
rosa_chinensis	RchiOBHm_Chr7g0237261
rosa_laevigata	RLG00000001014 RLG00000001019
rosa_multiflora	Rmu_co8497497.1_g000001 Rmu_sc0002923.1_g000046 Rmu_sc0027723.1_g000002
rosa_roxburghii	Rroxscaffold_3G00224340
rosa_rugosa	Rorug07G0302600
rosa_samantha	Rh2BG240700 Rh7AG459400 Rh7BG429500 Rh7CG476800 Rh7DG446000
rosa_wichuraiana	Rw7G038050 Rw7G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	149, 852
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	468, 478
AfaI	GTAC	3 cut(s)	360, 778, 905
AfiI	CCNNNNNNNGG	2 cut(s)	292, 1060
AgsI	TTSAA	5 cut(s)	146, 373, 487, 711, 760
AjnI	CCWGG	2 cut(s)	574, 996
AluBI	AGCT	8 cut(s)	139, 365, 463, 572, 652, 688, 769, 1071
AluI	AGCT	8 cut(s)	139, 365, 463, 572, 652, 688, 769, 1071
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	800, 931
AlwI	GGATC	2 cut(s)	149, 852
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	5 cut(s)	272, 400, 509, 799, 1002
ApeKI	GCWGC	4 cut(s)	751, 961, 982, 1049
ApoI	RAATTY	2 cut(s)	468, 478
AspLEI	GCGC	4 cut(s)	15, 94, 178, 982
AspS9I	GGNCC	4 cut(s)	386, 510, 994, 1003
AvaII	GGWCC	2 cut(s)	386, 994
BalI	TGGCCA	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	914
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	4 cut(s)	763, 969, 973, 1061
BccI	CCATC	3 cut(s)	264, 551, 1062
BcgI	CGANNNNNNTGC	2 cut(s)	420, 454
BciT130I	CCWGG	2 cut(s)	576, 998
BcoDI	GTCTC	2 cut(s)	800, 931
BfaI	CTAG	3 cut(s)	110, 128, 362
BfoI	RGCGCY	1 cut(s)	95
BglII	AGATCT	1 cut(s)	896
BisI	GCNGC	4 cut(s)	752, 962, 983, 1050
BlsI	GCNGC	4 cut(s)	753, 963, 984, 1051
Bme1390I	CCNGG	2 cut(s)	576, 998
Bme18I	GGWCC	2 cut(s)	386, 994
BmgT120I	GGNCC	4 cut(s)	386, 510, 994, 1003
BmiI	GGNNCC	3 cut(s)	387, 512, 1005
BmrFI	CCNGG	2 cut(s)	576, 998
BmsI	GCATC	5 cut(s)	948, 959, 1001, 1023, 1036
BoxI	GACNNNNGTC	1 cut(s)	812
BpiI	GAAGAC	1 cut(s)	808
BpmI	CTGGAG	3 cut(s)	597, 1007, 1019
BpuEI	CTTGAG	1 cut(s)	824
Bsa29I	ATCGAT	1 cut(s)	1031
BsaJI	CCNNGG	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 1060
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	576, 998
BseCI	ATCGAT	1 cut(s)	1031
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	2 cut(s)	562, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	292, 1060
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	763, 969, 973, 1061
BshFI	GGCC	5 cut(s)	274, 402, 511, 801, 1004
BshVI	ATCGAT	1 cut(s)	1031
BsiHKAI	GWGCWC	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	2 cut(s)	399, 867
BslI	CCNNNNNNNGG	2 cut(s)	292, 1060
BsmAI	GTCTC	2 cut(s)	800, 931
BsmFI	GGGAC	2 cut(s)	399, 867
BsmI	GAATGC	3 cut(s)	304, 498, 753
BsnI	GGCC	5 cut(s)	274, 402, 511, 801, 1004
Bsp1286I	GDGCHC	2 cut(s)	443, 914
Bsp143I	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	5 cut(s)	274, 402, 511, 801, 1004
BspCNI	CTCAG	1 cut(s)	600
BspDI	ATCGAT	1 cut(s)	1031
BspLI	GGNNCC	3 cut(s)	387, 512, 1005
BspPI	GGATC	2 cut(s)	149, 852
BsrDI	GCAATG	1 cut(s)	819
BssECI	CCNNGG	1 cut(s)	832
BssMI	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
BssSI	CACGAG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	2 cut(s)	576, 998
Bst4CI	ACNGT	4 cut(s)	451, 567, 601, 721
Bst6I	CTCTTC	2 cut(s)	80, 482
BstC8I	GCNNGC	2 cut(s)	636, 654
BstDEI	CTNAG	4 cut(s)	337, 587, 608, 866
BstF5I	GGATG	2 cut(s)	562, 1051
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	4 cut(s)	15, 94, 178, 982
BstKTI	GATC	7 cut(s)	133, 157, 434, 536, 847, 899, 1031
BstMAI	GTCTC	2 cut(s)	800, 931
BstMBI	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
BstNI	CCWGG	2 cut(s)	576, 998
BstPAI	GACNNNNGTC	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	574, 996
BstV1I	GCAGC	4 cut(s)	763, 969, 973, 1061
BstV2I	GAAGAC	1 cut(s)	808
BstX2I	RGATCY	2 cut(s)	154, 896
BstYI	RGATCY	2 cut(s)	154, 896
Bsu15I	ATCGAT	1 cut(s)	1031
BsuRI	GGCC	5 cut(s)	274, 402, 511, 801, 1004
BsuTUI	ATCGAT	1 cut(s)	1031
BtsCI	GGATG	2 cut(s)	562, 1051
Cac8I	GCNNGC	2 cut(s)	636, 654
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	4 cut(s)	15, 94, 178, 982
Cfr13I	GGNCC	4 cut(s)	386, 510, 994, 1003
ClaI	ATCGAT	1 cut(s)	1031
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	3 cut(s)	359, 777, 904
CviAII	CATG	3 cut(s)	230, 537, 812
CviQI	GTAC	3 cut(s)	359, 777, 904
DdeI	CTNAG	4 cut(s)	337, 587, 608, 866
DpnI	GATC	7 cut(s)	132, 156, 433, 535, 846, 898, 1030
DpnII	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	80, 482
EarI	CTCTTC	2 cut(s)	80, 482
EciI	GGCGGA	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	914
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	386, 994
EcoO109I	RGGNCCY	2 cut(s)	994, 1003
EcoRI	GAATTC	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	574, 996
EcoRV	GATATC	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	1016
EcoT38I	GRGCYC	1 cut(s)	914
FaeI	CATG	3 cut(s)	233, 540, 815
FaqI	GGGAC	2 cut(s)	399, 867
FatI	CATG	3 cut(s)	229, 536, 811
Fnu4HI	GCNGC	4 cut(s)	752, 962, 983, 1050
FokI	GGATG	2 cut(s)	569, 1058
FriOI	GRGCYC	1 cut(s)	914
Fsp4HI	GCNGC	4 cut(s)	752, 962, 983, 1050
FspBI	CTAG	3 cut(s)	110, 128, 362
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	4 cut(s)	14, 93, 177, 981
GluI	GCNGC	4 cut(s)	752, 962, 983, 1050
GsuI	CTGGAG	3 cut(s)	597, 1007, 1019
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	5 cut(s)	274, 402, 511, 801, 1004
HapII	CCGG	1 cut(s)	508
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	4 cut(s)	15, 94, 178, 982
Hin1II	CATG	3 cut(s)	233, 540, 815
Hin6I	GCGC	4 cut(s)	13, 92, 176, 980
HinP1I	GCGC	4 cut(s)	13, 92, 176, 980
HinfI	GANTC	8 cut(s)	27, 100, 106, 332, 697, 707, 728, 808
HpaII	CCGG	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188III	TCNNGA	5 cut(s)	115, 152, 158, 455, 915
Hpy8I	GTNNAC	1 cut(s)	563
HpyAV	CCTTC	4 cut(s)	313, 367, 985, 1054
HpyCH4III	ACNGT	4 cut(s)	451, 567, 601, 721
HpyCH4V	TGCA	9 cut(s)	353, 634, 673, 751, 824, 950, 961, 1014, 1049
HpyF3I	CTNAG	4 cut(s)	337, 587, 608, 866
Hsp92II	CATG	3 cut(s)	233, 540, 815
HspAI	GCGC	4 cut(s)	13, 92, 176, 980
Kzo9I	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
LmnI	GCTCC	2 cut(s)	370, 577
Lsp1109I	GCAGC	4 cut(s)	763, 969, 973, 1061
LweI	GCATC	5 cut(s)	948, 959, 1001, 1023, 1036
MaeI	CTAG	3 cut(s)	110, 128, 362
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	7 cut(s)	132, 156, 433, 535, 846, 898, 1030
MboI	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
MboII	GAAGA	7 cut(s)	88, 91, 94, 97, 160, 499, 808
MflI	RGATCY	2 cut(s)	154, 896
MhlI	GDGCHC	2 cut(s)	443, 914
MlsI	TGGCCA	1 cut(s)	274
MluCI	AATT	4 cut(s)	161, 468, 478, 527
MluNI	TGGCCA	1 cut(s)	274
MlyI	GAGTC	3 cut(s)	36, 341, 802
MnlI	CCTC	8 cut(s)	81, 205, 227, 247, 515, 800, 827, 994
Mox20I	TGGCCA	1 cut(s)	274
Mph1103I	ATGCAT	1 cut(s)	1016
MscI	TGGCCA	1 cut(s)	274
MseI	TTAA	2 cut(s)	405, 476
Msp20I	TGGCCA	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	2 cut(s)	576, 998
Mva1269I	GAATGC	3 cut(s)	304, 498, 753
MvaI	CCWGG	2 cut(s)	576, 998
NdeII	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
NlaIII	CATG	3 cut(s)	233, 540, 815
NlaIV	GGNNCC	3 cut(s)	387, 512, 1005
NmeAIII	GCCGAG	1 cut(s)	857
NsbI	TGCGCA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	1016
PceI	AGGCCT	1 cut(s)	801
PctI	GAATGC	3 cut(s)	304, 498, 753
PfeI	GAWTC	5 cut(s)	100, 106, 697, 707, 728
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	4 cut(s)	753, 963, 984, 1051
PleI	GAGTC	3 cut(s)	35, 340, 802
PpsI	GAGTC	3 cut(s)	35, 340, 802
PpuMI	RGGWCCY	1 cut(s)	994
PshAI	GACNNNNGTC	1 cut(s)	812
Psp5II	RGGWCCY	1 cut(s)	994
Psp6I	CCWGG	2 cut(s)	574, 996
PspGI	CCWGG	2 cut(s)	574, 996
PspN4I	GGNNCC	3 cut(s)	387, 512, 1005
PspPI	GGNCC	4 cut(s)	386, 510, 994, 1003
PspPPI	RGGWCCY	1 cut(s)	994
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	154, 896
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	3 cut(s)	360, 778, 905
RsaNI	GTAC	3 cut(s)	359, 777, 904
SaqAI	TTAA	2 cut(s)	405, 476
SatI	GCNGC	4 cut(s)	752, 962, 983, 1050
Sau3AI	GATC	7 cut(s)	130, 154, 431, 533, 844, 896, 1028
Sau96I	GGNCC	4 cut(s)	386, 510, 994, 1003
SchI	GAGTC	3 cut(s)	36, 341, 802
ScrFI	CCNGG	2 cut(s)	576, 998
SduI	GDGCHC	2 cut(s)	443, 914
SfaNI	GCATC	5 cut(s)	948, 959, 1001, 1023, 1036
SinI	GGWCC	2 cut(s)	386, 994
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	4 cut(s)	161, 468, 478, 527
SseBI	AGGCCT	1 cut(s)	801
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	3 cut(s)	110, 128, 362
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	2 cut(s)	574, 996
TaaI	ACNGT	4 cut(s)	451, 567, 601, 721
TaqI	TCGA	4 cut(s)	69, 114, 847, 1031
TasI	AATT	4 cut(s)	161, 468, 478, 527
TatI	WGTACW	2 cut(s)	358, 776
TfiI	GAWTC	5 cut(s)	100, 106, 697, 707, 728
Tru1I	TTAA	2 cut(s)	405, 476
Tru9I	TTAA	2 cut(s)	405, 476
TseI	GCWGC	4 cut(s)	751, 961, 982, 1049
TspDTI	ATGAA	2 cut(s)	53, 808
VpaK11BI	GGWCC	2 cut(s)	386, 994
XapI	RAATTY	2 cut(s)	468, 478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1015
XspI	CTAG	3 cut(s)	110, 128, 362
Zsp2I	ATGCAT	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.