Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Forward (+)

1743525 .. 1745294

Gene Structure 1770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCCCAATAAACTAGGTTGCCGTAGGCCCATAATTAGGAATTTAGGCCCATCCCGTCTTCTACCTCAAGCTTTAGCTCGAGAAAGAAGCTGTTGGCTTTCCGCTATGGCTTCAAAGCTGCTTCCGCTGCGACGGCTCTCGAGGAGGCTTCTCAGACCTCCATCTTCTCCTTCTTCTTCTTTCACCGCCTCCAGGTCGTGCTTCCATATTCTAGAAGCTAAGAAATCTCCTCATCTCTCCTCGAACAGCCACGACGGACCTCGTCGTTGGATAGCTTCCAGAAGCTTCTGTTCGAGCCCTTTGAATCTCGATGACGATACTAATATTCCCGCGGCCATCGATTACCATTCTGTACTGCAGGAGGATGAATTTCACAGGCTAGCTGATTCTACAATACAAGACCTCCAAGAGAAATTCGAGGAATATGGAGATTCTGTTCAAGTCGACGACTTTGACATAGACTATGGGAATGAGGTGCTGACCTTAAAACTTGGGGATCGTGGTACCTATGTTTTGAACAAACAAACACCAAACAGACAAATTTGGTTGTCTTCCCCAGTGAGGAATAAACGGTGTATACAGATAAAGTGGAGAATCCATTTTTTGTTCCTTCTATTAAAACTAATAAAAGAGACCTTCGAGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

241

Amino Acids

27.5

Weight (kDa)

9.58

Isoelectric Point (pI)

75.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	120 - 189	7.5e-24	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	2 cut(s)	444, 577
AccII	CGCG	1 cut(s)	332
AciI	CCGC	5 cut(s)	102, 125, 186, 330, 332
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	4 cut(s)	40, 368, 413, 540
AfaI	GTAC	2 cut(s)	354, 505
AfiI	CCNNNNNNNGG	3 cut(s)	36, 192, 561
AgsI	TTSAA	4 cut(s)	114, 304, 440, 517
AjnI	CCWGG	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	8 cut(s)	71, 77, 90, 118, 218, 275, 285, 383
AluI	AGCT	8 cut(s)	71, 77, 90, 118, 218, 275, 285, 383
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	2 cut(s)	78, 139
AoxI	GGCC	3 cut(s)	26, 46, 333
ApeKI	GCWGC	2 cut(s)	118, 127
ApoI	RAATTY	4 cut(s)	40, 368, 413, 540
Asp718I	GGTACC	1 cut(s)	503
AspS9I	GGNCC	3 cut(s)	27, 47, 257
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	379
AvaI	CYCGRG	2 cut(s)	78, 139
AvaII	GGWCC	1 cut(s)	257
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	50, 543
BbvI	GCAGC	2 cut(s)	105, 114
BccI	CCATC	3 cut(s)	58, 169, 344
BceAI	ACGGC	2 cut(s)	6, 149
BciT130I	CCWGG	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	4 cut(s)	14, 212, 380, 695
BfmI	CTRYAG	1 cut(s)	356
BisI	GCNGC	3 cut(s)	119, 128, 333
BlsI	GCNGC	3 cut(s)	120, 129, 334
Bme1390I	CCNGG	2 cut(s)	193, 663
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	2 cut(s)	78, 139
BmgT120I	GGNCC	3 cut(s)	27, 47, 257
BmiI	GGNNCC	2 cut(s)	505, 691
BmrFI	CCNGG	2 cut(s)	193, 663
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	688
BmtI	GCTAGC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	551
BpiI	GAAGAC	2 cut(s)	50, 543
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	663
Bsa29I	ATCGAT	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	4 cut(s)	387, 417, 420, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 192, 561
Bse1I	ACTGG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	193
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	50, 370
BseLI	CCNNNNNNNGG	3 cut(s)	36, 192, 561
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	3 cut(s)	157, 219, 229
BseXI	GCAGC	2 cut(s)	105, 114
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	28, 48, 335
BshNI	GGYRCC	1 cut(s)	503
BshVI	ATCGAT	1 cut(s)	339
BsiHKCI	CYCGRG	2 cut(s)	78, 139
BsiSI	CCGG	1 cut(s)	663
BslI	CCNNNNNNNGG	3 cut(s)	36, 192, 561
BsmAI	GTCTC	1 cut(s)	626
BsnI	GGCC	3 cut(s)	28, 48, 335
Bso31I	GGTCTC	1 cut(s)	626
BsoBI	CYCGRG	2 cut(s)	78, 139
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	496, 715
BspACI	CCGC	5 cut(s)	102, 125, 186, 330, 332
BspANI	GGCC	3 cut(s)	28, 48, 335
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	505, 691
BspMAI	CTGCAG	1 cut(s)	360
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	626
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	496, 715
BssNAI	GTATAC	1 cut(s)	578
Bst1107I	GTATAC	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	152, 219
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	50, 370
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	2 cut(s)	499, 718
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	2 cut(s)	496, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 127, 133
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	191, 661
BstSFI	CTRYAG	1 cut(s)	356
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	105, 114
BstV2I	GAAGAC	2 cut(s)	50, 543
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	578
Bsu15I	ATCGAT	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	28, 48, 335
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	50, 370
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	3 cut(s)	27, 47, 257
Cfr42I	CCGCGG	1 cut(s)	333
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	353, 504
CviQI	GTAC	2 cut(s)	353, 504
DdeI	CTNAG	2 cut(s)	152, 219
DpnI	GATC	2 cut(s)	498, 717
DpnII	GATC	2 cut(s)	496, 715
EaeI	YGGCCR	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	78, 139
EcoRII	CCWGG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	299
FaiI	YATR	8 cut(s)	32, 107, 207, 426, 458, 465, 510, 578
FauI	CCCGC	1 cut(s)	337
FblI	GTMKAC	2 cut(s)	444, 577
Fnu4HI	GCNGC	3 cut(s)	119, 128, 333
FokI	GGATG	2 cut(s)	37, 377
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	119, 128, 333
FspBI	CTAG	4 cut(s)	14, 212, 380, 695
GluI	GCNGC	3 cut(s)	119, 128, 333
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	3 cut(s)	28, 48, 335
HapII	CCGG	1 cut(s)	663
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	2 cut(s)	69, 283
HinfI	GANTC	4 cut(s)	304, 386, 431, 594
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	445, 578
Hpy188I	TCNGA	3 cut(s)	155, 707, 722
Hpy188III	TCNNGA	5 cut(s)	80, 139, 212, 279, 308
Hpy8I	GTNNAC	2 cut(s)	445, 578
Hpy99I	CGWCG	4 cut(s)	135, 257, 267, 449
HpyAV	CCTTC	4 cut(s)	180, 620, 639, 646
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 127, 133
HpyF3I	CTNAG	2 cut(s)	152, 219
KpnI	GGTACC	1 cut(s)	507
KspI	CCGCGG	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	496, 715
LpnPI	CCDG	7 cut(s)	178, 205, 292, 344, 361, 570, 676
Lsp1109I	GCAGC	2 cut(s)	105, 114
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	4 cut(s)	14, 212, 380, 695
MalI	GATC	2 cut(s)	498, 717
MboI	GATC	2 cut(s)	496, 715
MboII	GAAGA	5 cut(s)	50, 156, 165, 168, 543
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	5 cut(s)	33, 40, 368, 413, 540
MmeI	TCCRAC	2 cut(s)	248, 685
MseI	TTAA	3 cut(s)	485, 617, 651
MspA1I	CMGCKG	2 cut(s)	127, 332
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	2 cut(s)	193, 663
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	124, 127, 133
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	2 cut(s)	496, 715
NheI	GCTAGC	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	505, 691
PaeR7I	CTCGAG	2 cut(s)	78, 139
PfeI	GAWTC	4 cut(s)	304, 386, 431, 594
PflFI	GACNNNGTC	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	120, 129, 334
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	505, 691
PspPI	GGNCC	3 cut(s)	27, 47, 257
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	715
PsyI	GACNNNGTC	1 cut(s)	261
RsaI	GTAC	2 cut(s)	354, 505
RsaNI	GTAC	2 cut(s)	353, 504
SacII	CCGCGG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	485, 617, 651
SatI	GCNGC	3 cut(s)	119, 128, 333
Sau3AI	GATC	2 cut(s)	496, 715
Sau96I	GGNCC	3 cut(s)	27, 47, 257
ScrFI	CCNGG	2 cut(s)	193, 663
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	1 cut(s)	356
Sfr274I	CTCGAG	2 cut(s)	78, 139
Sfr303I	CCGCGG	1 cut(s)	333
SgrBI	CCGCGG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	2 cut(s)	78, 139
SmlI	CTYRAG	3 cut(s)	66, 78, 139
SmoI	CTYRAG	3 cut(s)	66, 78, 139
Sse9I	AATT	5 cut(s)	33, 40, 368, 413, 540
SsiI	CCGC	5 cut(s)	102, 125, 186, 330, 332
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	4 cut(s)	14, 212, 380, 695
StyD4I	CCNGG	2 cut(s)	191, 661
TaaI	ACNGT	1 cut(s)	573
TasI	AATT	5 cut(s)	33, 40, 368, 413, 540
TatI	WGTACW	1 cut(s)	352
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	4 cut(s)	304, 386, 431, 594
Tru1I	TTAA	3 cut(s)	485, 617, 651
Tru9I	TTAA	3 cut(s)	485, 617, 651
TscAI	CASTG	1 cut(s)	564
TseI	GCWGC	2 cut(s)	118, 127
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	564
Tth111I	GACNNNGTC	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	4 cut(s)	40, 368, 413, 540
XbaI	TCTAGA	1 cut(s)	211
XhoI	CTCGAG	2 cut(s)	78, 139
XmiI	GTMKAC	2 cut(s)	444, 577
XspI	CTAG	4 cut(s)	14, 212, 380, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.