Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0018110

Physical Location & Seq

Genomic Coordinates Reverse (-)

2271801 .. 2272496

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGACAATCAATGGATGGGTCTTCATGATCTCAGTTGGGCTAAATGCAGCTGCAAGATTTACTGCAAGCAATGTGAGAGTGAGTAATGAGCTTGGAGCTGGACATCCAAAGTCTACAGCATTTTCAGTTGTGGTGGTGACTGTAGTCTCTTTCATTATCTCAATCTTCGCAGCCGTAGTTGTTCTCTTACTGCGTCATAAGTTGAGCTACGCTTTTACAGAAGGTGAAGCCGTGGCTGCTGCTGTATCTGATCTCTGCCCGCTTCTCGCCCTCACCCTCCTCCTTAACGGAGTGCAGCCAGTTTTGTCCGGTATATATAAATTGGAGCATTCGTTCATGAACTTGCCTACGTTAAATGAAACATATGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0016020 GO:0022857 GO:0031090 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

125

Amino Acids

13.2

Weight (kDa)

6.82

Isoelectric Point (pI)

18.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	2 - 107	2.9e-16	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018110)

Species	Orthologous Gene IDs
malus_domestica	MD12G1014600.v1.1
pyrus_communis	pycom09g03040
rosa_laevigata	RLG00000022607 RLG00000031132
rosa_multiflora	Rmu_co8050928.1_g000001 Rmu_sc0015572.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278050
rosa_samantha	Rh2AG543300 Rh2CG525300 Rh2CG526100 Rh5DG543300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	1 cut(s)	260
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	4 cut(s)	50, 91, 98, 207
AluI	AGCT	4 cut(s)	50, 91, 98, 207
Alw26I	GTCTC	1 cut(s)	151
ApeKI	GCWGC	6 cut(s)	47, 50, 170, 236, 239, 295
AsuHPI	GGTGA	3 cut(s)	148, 236, 265
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	6 cut(s)	37, 59, 182, 223, 226, 307
BccI	CCATC	1 cut(s)	9
BceAI	ACGGC	2 cut(s)	158, 215
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	2 cut(s)	114, 141
BisI	GCNGC	6 cut(s)	48, 51, 171, 237, 240, 296
BlsI	GCNGC	6 cut(s)	49, 52, 172, 238, 241, 297
BoxI	GACNNNNGTC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	20, 103
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	6 cut(s)	37, 59, 182, 223, 226, 307
BsgI	GTGCAG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	27, 250
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	44
BspHI	TCATGA	2 cut(s)	24, 336
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	27, 250
Bst4CI	ACNGT	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	67, 260
BstDEI	CTNAG	1 cut(s)	31
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	20, 103
BstKTI	GATC	2 cut(s)	30, 253
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	2 cut(s)	27, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstPAI	GACNNNNGTC	1 cut(s)	143
BstSFI	CTRYAG	2 cut(s)	114, 141
BstV1I	GCAGC	6 cut(s)	37, 59, 182, 223, 226, 307
BstV2I	GAAGAC	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	20, 103
Cac8I	GCNNGC	2 cut(s)	67, 260
CciI	TCATGA	2 cut(s)	24, 336
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	25, 337
CviJI	RGCY	9 cut(s)	40, 50, 91, 98, 173, 207, 230, 236, 298
CviKI_1	RGCY	9 cut(s)	40, 50, 91, 98, 173, 207, 230, 236, 298
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	2 cut(s)	29, 252
DpnII	GATC	2 cut(s)	27, 250
FaeI	CATG	2 cut(s)	28, 340
FaiI	YATR	8 cut(s)	26, 198, 314, 316, 318, 338, 364, 366
FatI	CATG	2 cut(s)	24, 336
FauI	CCCGC	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	6 cut(s)	48, 51, 171, 237, 240, 296
FokI	GGATG	2 cut(s)	27, 90
Fsp4HI	GCNGC	6 cut(s)	48, 51, 171, 237, 240, 296
GluI	GCNGC	6 cut(s)	48, 51, 171, 237, 240, 296
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	28, 340
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	3 cut(s)	148, 236, 265
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	25, 337
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	47, 53, 65, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	28, 340
Kzo9I	GATC	2 cut(s)	27, 250
LmnI	GCTCC	2 cut(s)	95, 325
LpnPI	CCDG	3 cut(s)	84, 312, 322
Lsp1109I	GCAGC	6 cut(s)	37, 59, 182, 223, 226, 307
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	29, 252
MboI	GATC	2 cut(s)	27, 250
MboII	GAAGA	2 cut(s)	13, 157
MluCI	AATT	1 cut(s)	320
MnlI	CCTC	3 cut(s)	281, 287, 290
MseI	TTAA	2 cut(s)	285, 353
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	2 cut(s)	27, 250
NlaIII	CATG	2 cut(s)	28, 340
NmuCI	GTSAC	1 cut(s)	136
PagI	TCATGA	2 cut(s)	24, 336
PctI	GAATGC	1 cut(s)	328
PkrI	GCNGC	6 cut(s)	49, 52, 172, 238, 241, 297
PshAI	GACNNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	285, 353
SatI	GCNGC	6 cut(s)	48, 51, 171, 237, 240, 296
Sau3AI	GATC	2 cut(s)	27, 250
SetI	ASST	6 cut(s)	52, 93, 100, 209, 226, 353
SfcI	CTRYAG	2 cut(s)	114, 141
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	353
TasI	AATT	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	285, 353
Tru9I	TTAA	2 cut(s)	285, 353
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	6 cut(s)	47, 50, 170, 236, 239, 295
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	5 cut(s)	13, 142, 325, 353, 372
TspGWI	ACGGA	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.