Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004348

Physical Location & Seq

Genomic Coordinates Reverse (-)

16755494 .. 16759377

Gene Structure 3884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16460.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTTGCCAGTTGGTTGGCCTATGTCATGTTTGAAGATACCCAGCAGGGGAAAATAGTATTTACTTCGTATGGTATCACATTGTATCAGATGTTTATTTTATTCACCACATCAAACAATCCAGATGTCTGGATACCTGCCTACAAGGCTTCACGTTGGTTTTCCTTGTTTTTCGTTATCTATGTGCTGTTGGGAGTTTACTTTGTCACGAACTTGATTCTTGCTGTTGTGTACGATAGCTTCAAAAATCAGCTTGTGAAACAAGTTTCTGGGATGGACCAGACGAGGAAAGCTATACTAAAGAAAGCCTTCAATTTATTAGACAAGGATAATGTAGGATATCTCAATAAGGATCAGTGTATTCAACTATTTGAGGAACTAAATAATTACAGGACTTTGCCAAACATAACAAGAGAAGAATTTGAGCTGATATTTGAAGAGCTGGATGACAGTGGAGACTTCAAGATAAACTTAGAAGAGTTCTTTGATCTTTGCAATGCCATTGCCCTAAGATTCCAGAAGGAGGATTCTCCCTCTTTGCTTGAAAAGTTCCCTTCAATCTACCATTCATTGTTCTCTGAAAAGTTGAAGGCCTTTGTTCGGAGTCCCAAATTTGGATACATAATATCCTTCATGCTCATAGTTAATCTGGCTGCTGTTATTGTTGAAACAACGGGGTTCAAGGCCCCATCTCAACGGGCTCAAGGCCTCCATCTCAATGGGCTTTCTGATGGCCGATGTTTATGTGTATCTTGCGCTCATATGTTGAGTCCCACATCCGCTATGTACTTGTGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001508 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005245 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010119 GO:0010565 GO:0010817 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019216 GO:0019217 GO:0019222 GO:0019722 GO:0019932 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031090 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0034220 GO:0035556 GO:0042304 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046885 GO:0046890 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051899 GO:0055085 GO:0062012 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0080090 GO:0080140 GO:0080141 GO:0086010 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Ion_trans

Protein Analysis

267

Amino Acids

30.58

Weight (kDa)

5.69

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03560
fragaria_vesca	FvH4_6g26210 FvH4_6g26210 FvH4_6g26210 FvH4_6g26210
malus_domestica	MD09G1247300.v1.1 MD17G1240200.v1.1
prunus_persica	Prupe.3G138600_v2.0.a1 Prupe.3G138600_v2.0.a1 Prupe.3G138600_v2.0.a1
pyrus_communis	pycom09g16460 pycom17g24350
rosa_chinensis	RchiOBHm_Chr2g0126531 RchiOBHm_Chr2g0126551
rosa_laevigata	RLG00000018910 RLG00000018911
rosa_multiflora	Rmu_sc0002369.1_g000031 Rmu_sc0002369.1_g000036 Rmu_sc0007463.1_g000007
rosa_roxburghii	Rroxscaffold_2G00117090 Rroxscaffold_2G00117120
rosa_rugosa	Rorug02G0263600
rosa_samantha	Rh2AG320600 Rh2AG320700 Rh2BG329000 Rh2BG329100 Rh2CG308800 Rh2CG308900 Rh2DG348300 Rh2DG348400
rosa_wichuraiana	Rw2G025970 Rw2G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AciI	CCGC	1 cut(s)	780
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	733
AcsI	RAATTY	2 cut(s)	419, 611
AfaI	GTAC	2 cut(s)	233, 788
AfiI	CCNNNNNNNGG	4 cut(s)	48, 523, 600, 614
AluBI	AGCT	5 cut(s)	240, 253, 293, 427, 442
AluI	AGCT	5 cut(s)	240, 253, 293, 427, 442
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	5 cut(s)	18, 591, 684, 706, 733
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	419, 611
Asp700I	GAANNNNTTC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	758
AspS9I	GGNCC	2 cut(s)	277, 685
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	703
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	4 cut(s)	268, 697, 720, 725
BciVI	GTATCC	2 cut(s)	126, 611
BcoDI	GTCTC	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	145
BfuI	GTATCC	2 cut(s)	126, 611
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 685
BmiI	GGNNCC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 523, 600, 614
Bse1I	ACTGG	1 cut(s)	9
Bse3DI	GCAATG	2 cut(s)	501, 502
BseGI	GGATG	3 cut(s)	279, 451, 776
BseLI	CCNNNNNNNGG	4 cut(s)	48, 523, 600, 614
BseMI	GCAATG	2 cut(s)	501, 502
BseNI	ACTGG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	640
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	5 cut(s)	20, 593, 686, 708, 735
BslFI	GGGAC	2 cut(s)	591, 756
BslI	CCNNNNNNNGG	4 cut(s)	48, 523, 600, 614
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	591, 756
BsnI	GGCC	5 cut(s)	20, 593, 686, 708, 735
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	2 cut(s)	352, 487
BspACI	CCGC	1 cut(s)	780
BspANI	GGCC	5 cut(s)	20, 593, 686, 708, 735
BspLI	GGNNCC	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	360
BspQI	GCTCTTC	1 cut(s)	432
BsrDI	GCAATG	2 cut(s)	501, 502
BsrI	ACTGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	352, 487
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	2 cut(s)	432, 471
BstDEI	CTNAG	2 cut(s)	472, 509
BstF5I	GGATG	3 cut(s)	279, 451, 776
BstHHI	GCGC	1 cut(s)	758
BstKTI	GATC	2 cut(s)	355, 490
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	2 cut(s)	352, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	640
BstXI	CCANNNNNNTGG	3 cut(s)	16, 129, 719
BsuI	GTATCC	2 cut(s)	126, 611
BsuRI	GGCC	5 cut(s)	20, 593, 686, 708, 735
BtsCI	GGATG	3 cut(s)	279, 451, 776
BtsIMutI	CAGTG	2 cut(s)	362, 457
BveI	ACCTGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	758
Cfr13I	GGNCC	2 cut(s)	277, 685
Csp6I	GTAC	2 cut(s)	232, 787
CviAII	CATG	2 cut(s)	28, 634
CviQI	GTAC	2 cut(s)	232, 787
DdeI	CTNAG	2 cut(s)	472, 509
DpnI	GATC	2 cut(s)	354, 489
DpnII	GATC	2 cut(s)	352, 487
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	2 cut(s)	432, 471
EarI	CTCTTC	2 cut(s)	432, 471
Eco147I	AGGCCT	2 cut(s)	593, 708
Eco24I	GRGCYC	1 cut(s)	703
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	703
FaeI	CATG	2 cut(s)	31, 637
FalI	AAGNNNNNCTT	4 cut(s)	293, 325, 455, 487
FaqI	GGGAC	2 cut(s)	591, 756
FatI	CATG	2 cut(s)	27, 633
FauNDI	CATATG	1 cut(s)	762
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	3 cut(s)	286, 458, 763
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	1 cut(s)	654
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	1 cut(s)	654
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	5 cut(s)	20, 593, 686, 708, 735
HhaI	GCGC	1 cut(s)	758
Hin1II	CATG	2 cut(s)	31, 637
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HinfI	GANTC	5 cut(s)	217, 513, 527, 604, 769
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	199, 232
Hpy188I	TCNGA	4 cut(s)	90, 580, 603, 730
Hpy188III	TCNNGA	5 cut(s)	122, 130, 208, 463, 517
Hpy8I	GTNNAC	2 cut(s)	199, 232
HpyAV	CCTTC	5 cut(s)	319, 514, 564, 583, 640
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	472, 509
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	31, 637
HspAI	GCGC	1 cut(s)	756
Kzo9I	GATC	2 cut(s)	352, 487
LguI	GCTCTTC	1 cut(s)	432
Lsp1109I	GCAGC	1 cut(s)	640
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	354, 489
MboI	GATC	2 cut(s)	352, 487
MboII	GAAGA	4 cut(s)	47, 428, 449, 488
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	4 cut(s)	313, 385, 419, 611
MlyI	GAGTC	2 cut(s)	613, 778
MnlI	CCTC	5 cut(s)	279, 367, 517, 544, 719
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	717
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	762
NdeII	GATC	2 cut(s)	352, 487
NlaIII	CATG	2 cut(s)	31, 637
NlaIV	GGNNCC	1 cut(s)	687
NmuCI	GTSAC	1 cut(s)	205
PceI	AGGCCT	2 cut(s)	593, 708
PciSI	GCTCTTC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	3 cut(s)	217, 513, 527
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	2 cut(s)	612, 777
PpsI	GAGTC	2 cut(s)	612, 777
PspFI	CCCAGC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	2 cut(s)	277, 685
RsaI	GTAC	2 cut(s)	233, 788
RsaNI	GTAC	2 cut(s)	232, 787
RseI	CAYNNNNRTG	1 cut(s)	717
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	2 cut(s)	352, 487
Sau96I	GGNCC	2 cut(s)	277, 685
SchI	GAGTC	2 cut(s)	613, 778
SduI	GDGCHC	1 cut(s)	703
SetI	ASST	7 cut(s)	139, 157, 242, 255, 295, 429, 444
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
Sse9I	AATT	4 cut(s)	313, 385, 419, 611
SseBI	AGGCCT	2 cut(s)	593, 708
SsiI	CCGC	1 cut(s)	780
StuI	AGGCCT	2 cut(s)	593, 708
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	1 cut(s)	157
TasI	AATT	4 cut(s)	313, 385, 419, 611
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	3 cut(s)	217, 513, 527
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	2 cut(s)	362, 457
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	558, 622
TspRI	CASTG	2 cut(s)	362, 457
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	419, 611
XmnI	GAANNNNTTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.