Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007463.1

Orthogroup ID

OG0004348

Physical Location & Seq

Genomic Coordinates Forward (+)

38699 .. 39163

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007463.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggaggacccattgcttaacggagaaggcagtagtagtccccgacgccgcggcgatttgtccagggccaagagcttcaaacgccgctccgatgccatcaccttcggctcttcttatcagaaagcagccgctctcgtcgacttggcggaagacggcattggcttacctgagcagatacttgatctctcatcttttcatagctctgcaaaatactacttcctttatgtgcgattcagcttcctctgggccctactctacttcgccctcttgattctcaatttccttgaggtttctaatcccaagcctccttcctcacatcgcagtataatcccccccctgttattgcttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001508 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005245 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010119 GO:0010565 GO:0010817 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019216 GO:0019217 GO:0019222 GO:0019722 GO:0019932 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031090 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0034220 GO:0035556 GO:0042304 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046885 GO:0046890 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051899 GO:0055085 GO:0062012 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0080090 GO:0080140 GO:0080141 GO:0086010 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Ion_trans

Protein Analysis

117

Amino Acids

13.14

Weight (kDa)

9.05

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03560
fragaria_vesca	FvH4_6g26210 FvH4_6g26210 FvH4_6g26210 FvH4_6g26210
malus_domestica	MD09G1247300.v1.1 MD17G1240200.v1.1
prunus_persica	Prupe.3G138600_v2.0.a1 Prupe.3G138600_v2.0.a1 Prupe.3G138600_v2.0.a1
pyrus_communis	pycom09g16460 pycom17g24350
rosa_chinensis	RchiOBHm_Chr2g0126531 RchiOBHm_Chr2g0126551
rosa_laevigata	RLG00000018910 RLG00000018911
rosa_multiflora	Rmu_sc0002369.1_g000031 Rmu_sc0002369.1_g000036 Rmu_sc0007463.1_g000007
rosa_roxburghii	Rroxscaffold_2G00117090 Rroxscaffold_2G00117120
rosa_rugosa	Rorug02G0263600
rosa_samantha	Rh2AG320600 Rh2AG320700 Rh2BG329000 Rh2BG329100 Rh2CG308800 Rh2CG308900 Rh2DG348300 Rh2DG348400
rosa_wichuraiana	Rw2G025970 Rw2G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	87, 131
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	51
AciI	CCGC	5 cut(s)	49, 51, 85, 129, 146
AcyI	GRCGYC	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	79, 350
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	3 cut(s)	75, 201, 237
AluI	AGCT	3 cut(s)	75, 201, 237
AoxI	GGCC	2 cut(s)	66, 246
ApaI	GGGCCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	4 cut(s)	7, 66, 246, 247
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	64
BisI	GCNGC	5 cut(s)	49, 52, 85, 126, 129
BlsI	GCNGC	5 cut(s)	50, 53, 86, 127, 130
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	4 cut(s)	7, 66, 246, 247
BmiI	GGNNCC	2 cut(s)	9, 248
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	49, 63
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	49, 63
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	68, 248
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	68, 248
Bsp120I	GGGCCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	5 cut(s)	49, 51, 85, 129, 146
BspANI	GGCC	2 cut(s)	68, 248
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	9, 248
BspQI	GCTCTTC	1 cut(s)	115
BsrBI	CCGCTC	2 cut(s)	87, 131
BsrDI	GCAATG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	49, 63
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	68, 248
BtgI	CCRYGG	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	302
Cfr13I	GGNCC	4 cut(s)	7, 66, 246, 247
Cfr42I	CCGCGG	1 cut(s)	52
CseI	GACGC	1 cut(s)	54
CviJI	RGCY	9 cut(s)	68, 75, 108, 128, 162, 201, 237, 248, 304
CviKI_1	RGCY	9 cut(s)	68, 75, 108, 128, 162, 201, 237, 248, 304
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	7
EcoO109I	RGGNCCY	2 cut(s)	7, 247
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	250
FaiI	YATR	3 cut(s)	198, 225, 326
FaqI	GGGAC	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	49, 52, 85, 126, 129
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	5 cut(s)	49, 52, 85, 126, 129
GluI	GCNGC	5 cut(s)	49, 52, 85, 126, 129
HaeIII	GGCC	2 cut(s)	68, 248
HgaI	GACGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	231, 271
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	91, 120
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	2 cut(s)	48, 140
HpyAV	CCTTC	3 cut(s)	20, 112, 318
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	49, 76, 180, 229, 350
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	82
MalI	GATC	1 cut(s)	183
MbiI	CCGCTC	2 cut(s)	87, 131
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	102, 161
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	1 cut(s)	277
MnlI	CCTC	5 cut(s)	251, 275, 280, 315, 322
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	9, 248
PciSI	GCTCTTC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	231, 271
PkrI	GCNGC	5 cut(s)	50, 53, 86, 127, 130
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	9, 248
PspOMI	GGGCCC	1 cut(s)	246
PspPI	GGNCC	4 cut(s)	7, 66, 246, 247
PspPPI	RGGWCCY	1 cut(s)	7
SacII	CCGCGG	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	5 cut(s)	49, 52, 85, 126, 129
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	4 cut(s)	7, 66, 246, 247
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	6 cut(s)	77, 104, 169, 203, 239, 291
SfaNI	GCATC	1 cut(s)	82
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	5 cut(s)	49, 51, 85, 129, 146
StyD4I	CCNGG	1 cut(s)	62
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	277
TauI	GCSGC	4 cut(s)	51, 54, 87, 131
TfiI	GAWTC	2 cut(s)	231, 271
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.