Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002369.1

Orthogroup ID

OG0004348

Physical Location & Seq

Genomic Coordinates Reverse (-)

163213 .. 169281

Gene Structure 6069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002369.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

atggagaatccattgctcaccggagaaagcagtactctccgacgcgggggcgatttgtccagggccttcaaacgccgctccgatgccattacattcggctcttcttatcagaaagcagccgctctcgtcgacttggcggaagacggcattggcttacctgagcagatacttgatctctcatctttccatagctctgcaaaatactacttcctttatatgcgattcagcttcctctgggccctactctacttcgctctcttgattctcaatttccttgagaaacctctgtggtgtgccaggtatactgattatacttgcagtgacagggattactactatctcggccaattgccctacttaactcctacggagtcccttatttatgagggcataacactgattgtactcatggtgcatactttctttccaatttcatatgtggggttccgtctctattggaaaagtcctcttactcaattcaaggtcgtatgcctgctgattttggttgctgatttgctggtttatgttctctatttgtctccagtagcctttgattctctccctttccgggttgctccatatgtcagagtcatctttttcatcttgaactttagggaattacgatcgtgcatgctcatcttggctggaatgtttggcacatacttgaacgtcttggctttagggcttttatttcttctgttttccagttggctagcttatgtcatatttgaagatactgaccaggggacaacagtatttacttcatacggagtctattttgtcacaaatttgatccttgccgttgtgtatgacagcttcaaaagtcagcttgtaaagcaagtttctgagatggaccagacgaggaaaactatactggagaaagcctttaatttaatagaacaagataacgctggatatatcaataaggaccagtgcatacgtttgtttgaggaactaaacaaatacaggactttgccaaaaatatcaagagaagaatttgagctgatatttgatgagctggatgacagtggagacatcaaggtagataaatttttatacaagcatttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001508 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005245 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008324 GO:0009791 GO:0009845 GO:0009889 GO:0009987 GO:0010119 GO:0010565 GO:0010817 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019216 GO:0019217 GO:0019222 GO:0019722 GO:0019932 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031090 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0034220 GO:0035556 GO:0042304 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046885 GO:0046890 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051899 GO:0055085 GO:0062012 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0080090 GO:0080140 GO:0080141 GO:0086010 GO:0090351 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Ion_trans

Protein Analysis

356

Amino Acids

41.35

Weight (kDa)

5.28

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03560
fragaria_vesca	FvH4_6g26210 FvH4_6g26210 FvH4_6g26210 FvH4_6g26210
malus_domestica	MD09G1247300.v1.1 MD17G1240200.v1.1
prunus_persica	Prupe.3G138600_v2.0.a1 Prupe.3G138600_v2.0.a1 Prupe.3G138600_v2.0.a1
pyrus_communis	pycom09g16460 pycom17g24350
rosa_chinensis	RchiOBHm_Chr2g0126531 RchiOBHm_Chr2g0126551
rosa_laevigata	RLG00000018910 RLG00000018911
rosa_multiflora	Rmu_sc0002369.1_g000031 Rmu_sc0002369.1_g000036 Rmu_sc0007463.1_g000007
rosa_roxburghii	Rroxscaffold_2G00117090 Rroxscaffold_2G00117120
rosa_rugosa	Rorug02G0263600
rosa_samantha	Rh2AG320600 Rh2AG320700 Rh2BG329000 Rh2BG329100 Rh2CG308800 Rh2CG308900 Rh2DG348300 Rh2DG348400
rosa_wichuraiana	Rw2G025970 Rw2G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	78, 122
AccI	GTMKAC	2 cut(s)	129, 302
AccII	CGCG	1 cut(s)	45
AciI	CCGC	4 cut(s)	45, 76, 120, 137
AclWI	GGATC	1 cut(s)	787
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	3 cut(s)	787, 995, 1049
AfaI	GTAC	2 cut(s)	34, 405
AfiI	CCNNNNNNNGG	2 cut(s)	46, 568
AgsI	TTSAA	6 cut(s)	70, 481, 607, 667, 731, 820
AjnI	CCWGG	3 cut(s)	59, 296, 741
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	7 cut(s)	192, 228, 716, 816, 829, 1003, 1018
AluI	AGCT	7 cut(s)	192, 228, 716, 816, 829, 1003, 1018
Alw26I	GTCTC	3 cut(s)	455, 543, 1026
AlwI	GGATC	1 cut(s)	787
AoxI	GGCC	3 cut(s)	63, 237, 343
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	3 cut(s)	787, 995, 1049
AspS9I	GGNCC	5 cut(s)	63, 237, 238, 853, 928
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	1 cut(s)	10
AsuNHI	GCTAGC	1 cut(s)	712
AvaII	GGWCC	2 cut(s)	853, 928
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	800, 832
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	844
BceAI	ACGGC	2 cut(s)	160, 785
BciT130I	CCWGG	3 cut(s)	61, 298, 743
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	3 cut(s)	455, 543, 1026
BfaI	CTAG	1 cut(s)	713
BisI	GCNGC	3 cut(s)	76, 117, 120
BlsI	GCNGC	3 cut(s)	77, 118, 121
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	4 cut(s)	61, 298, 569, 743
Bme18I	GGWCC	2 cut(s)	853, 928
BmgT120I	GGNCC	5 cut(s)	63, 237, 238, 853, 928
BmiI	GGNNCC	2 cut(s)	239, 446
BmrFI	CCNGG	4 cut(s)	61, 298, 569, 743
BmsI	GCATC	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	2 cut(s)	525, 896
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	60, 742
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 568
Bse1I	ACTGG	4 cut(s)	542, 705, 879, 931
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	3 cut(s)	61, 298, 743
BseDI	CCNNGG	2 cut(s)	60, 742
BseGI	GGATG	1 cut(s)	1027
BseLI	CCNNNNNNNGG	2 cut(s)	46, 568
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	150, 837
BseNI	ACTGG	4 cut(s)	542, 705, 879, 931
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	626
BshFI	GGCC	3 cut(s)	65, 239, 345
BsiEI	CGRYCG	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	21, 568
BslFI	GGGAC	2 cut(s)	358, 760
BslI	CCNNNNNNNGG	2 cut(s)	46, 568
BsmAI	GTCTC	3 cut(s)	455, 543, 1026
BsmBI	CGTCTC	1 cut(s)	455
BsmFI	GGGAC	2 cut(s)	358, 760
BsnI	GGCC	3 cut(s)	65, 239, 345
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	172, 623, 792
BspACI	CCGC	4 cut(s)	45, 76, 120, 137
BspANI	GGCC	3 cut(s)	65, 239, 345
BspCNI	CTCAG	2 cut(s)	151, 838
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	239, 446
BspOI	GCTAGC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	787
BspQI	GCTCTTC	1 cut(s)	106
BsrBI	CCGCTC	2 cut(s)	78, 122
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	542, 705, 879, 931
BssECI	CCNNGG	2 cut(s)	60, 742
BssMI	GATC	3 cut(s)	172, 623, 792
BssNAI	GTATAC	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	303
Bst2UI	CCWGG	3 cut(s)	61, 298, 743
Bst4CI	ACNGT	2 cut(s)	754, 1028
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	494, 632, 714
BstDEI	CTNAG	2 cut(s)	159, 846
BstF5I	GGATG	1 cut(s)	1027
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	175, 626, 795
BstMAI	GTCTC	3 cut(s)	455, 543, 1026
BstMBI	GATC	3 cut(s)	172, 623, 792
BstMCI	CGRYCG	1 cut(s)	626
BstMWI	GCNNNNNNNGC	1 cut(s)	835
BstNI	CCWGG	3 cut(s)	61, 298, 743
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	4 cut(s)	59, 296, 567, 741
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	147
BstZ17I	GTATAC	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	65, 239, 345
BtsCI	GGATG	1 cut(s)	1027
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	4 cut(s)	325, 395, 938, 1033
Cac8I	GCNNGC	3 cut(s)	494, 632, 714
Cfr13I	GGNCC	5 cut(s)	63, 237, 238, 853, 928
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	33, 404
CviAII	CATG	2 cut(s)	409, 631
CviQI	GTAC	2 cut(s)	33, 404
DdeI	CTNAG	2 cut(s)	159, 846
DpnI	GATC	3 cut(s)	174, 625, 794
DpnII	GATC	3 cut(s)	172, 623, 792
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	853, 928
EcoO109I	RGGNCCY	2 cut(s)	63, 238
EcoRII	CCWGG	3 cut(s)	59, 296, 741
EcoT38I	GRGCYC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	2 cut(s)	412, 634
FaqI	GGGAC	2 cut(s)	358, 760
FatI	CATG	2 cut(s)	408, 630
FauI	CCCGC	1 cut(s)	38
FauNDI	CATATG	2 cut(s)	436, 580
FblI	GTMKAC	2 cut(s)	129, 302
Fnu4HI	GCNGC	3 cut(s)	76, 117, 120
FokI	GGATG	1 cut(s)	1034
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	3 cut(s)	76, 117, 120
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	3 cut(s)	76, 117, 120
GsuI	CTGGAG	2 cut(s)	525, 896
HaeIII	GGCC	3 cut(s)	65, 239, 345
HapII	CCGG	2 cut(s)	21, 568
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	412, 634
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	7 cut(s)	7, 222, 262, 371, 554, 588, 771
HpaII	CCGG	2 cut(s)	21, 568
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	2 cut(s)	130, 303
Hpy188I	TCNGA	5 cut(s)	41, 82, 111, 587, 847
Hpy188III	TCNNGA	3 cut(s)	259, 604, 987
Hpy8I	GTNNAC	2 cut(s)	130, 303
Hpy99I	CGWCG	2 cut(s)	45, 131
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	754, 1028
HpyCH4IV	ACGT	2 cut(s)	669, 940
HpyCH4V	TGCA	5 cut(s)	197, 318, 415, 630, 936
HpyF10VI	GCNNNNNNNGC	1 cut(s)	835
HpyF3I	CTNAG	2 cut(s)	159, 846
HpySE526I	ACGT	2 cut(s)	669, 940
Hsp92II	CATG	2 cut(s)	412, 634
Kzo9I	GATC	3 cut(s)	172, 623, 792
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	83, 580
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	2 cut(s)	669, 940
MaeIII	GTNAC	2 cut(s)	320, 781
MalI	GATC	3 cut(s)	174, 625, 794
MbiI	CCGCTC	2 cut(s)	78, 122
MboI	GATC	3 cut(s)	172, 623, 792
MboII	GAAGA	5 cut(s)	93, 152, 686, 743, 1004
MfeI	CAATTG	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	9 cut(s)	268, 347, 429, 476, 617, 787, 889, 995, 1049
MlyI	GAGTC	3 cut(s)	380, 597, 780
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	242, 294, 379, 477, 855, 943
MseI	TTAA	3 cut(s)	359, 888, 893
MspI	CCGG	2 cut(s)	21, 568
MspR9I	CCNGG	4 cut(s)	61, 298, 569, 743
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	3 cut(s)	61, 298, 743
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	835
NciI	CCSGG	1 cut(s)	569
NdeI	CATATG	2 cut(s)	436, 580
NdeII	GATC	3 cut(s)	172, 623, 792
NheI	GCTAGC	1 cut(s)	712
NlaIII	CATG	2 cut(s)	412, 634
NlaIV	GGNNCC	2 cut(s)	239, 446
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	320, 781
NspI	RCATGY	1 cut(s)	634
PaeI	GCATGC	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	106
PfeI	GAWTC	4 cut(s)	7, 222, 262, 554
PkrI	GCNGC	3 cut(s)	77, 118, 121
Ple19I	CGATCG	1 cut(s)	626
PleI	GAGTC	3 cut(s)	379, 596, 779
PpsI	GAGTC	3 cut(s)	379, 596, 779
Psp6I	CCWGG	3 cut(s)	59, 296, 741
PspGI	CCWGG	3 cut(s)	59, 296, 741
PspN4I	GGNNCC	2 cut(s)	239, 446
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	5 cut(s)	63, 237, 238, 853, 928
PvuI	CGATCG	1 cut(s)	626
RsaI	GTAC	2 cut(s)	34, 405
RsaNI	GTAC	2 cut(s)	33, 404
SalI	GTCGAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	3 cut(s)	359, 888, 893
SatI	GCNGC	3 cut(s)	76, 117, 120
Sau3AI	GATC	3 cut(s)	172, 623, 792
Sau96I	GGNCC	5 cut(s)	63, 237, 238, 853, 928
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	3 cut(s)	380, 597, 780
ScrFI	CCNGG	4 cut(s)	61, 298, 569, 743
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	73
SinI	GGWCC	2 cut(s)	853, 928
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	9 cut(s)	268, 347, 429, 476, 617, 787, 889, 995, 1049
SsiI	CCGC	4 cut(s)	45, 76, 120, 137
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	4 cut(s)	59, 296, 567, 741
TaaI	ACNGT	2 cut(s)	754, 1028
TaiI	ACGT	2 cut(s)	672, 943
TaqI	TCGA	1 cut(s)	129
TasI	AATT	9 cut(s)	268, 347, 429, 476, 617, 787, 889, 995, 1049
TatI	WGTACW	2 cut(s)	32, 403
TauI	GCSGC	2 cut(s)	78, 122
TfiI	GAWTC	4 cut(s)	7, 222, 262, 554
Tru1I	TTAA	3 cut(s)	359, 888, 893
Tru9I	TTAA	3 cut(s)	359, 888, 893
TscAI	CASTG	4 cut(s)	325, 402, 938, 1033
TseFI	GTSAC	2 cut(s)	320, 781
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	320, 781
TspDTI	ATGAA	3 cut(s)	423, 589, 753
TspGWI	ACGGA	3 cut(s)	383, 437, 783
TspRI	CASTG	4 cut(s)	325, 402, 938, 1033
VpaK11BI	GGWCC	2 cut(s)	853, 928
XapI	RAATTY	3 cut(s)	787, 995, 1049
XceI	RCATGY	1 cut(s)	634
XmiI	GTMKAC	2 cut(s)	129, 302
XspI	CTAG	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.