Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Reverse (-)

17827631 .. 17832575

Gene Structure 4945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCTTTTCGTGGAGGTGCAAAGCGTTCTCTGGGTTCAATCCTGTGTAGCAGGGTGCTGCCGAACACTAGCTATACTTCTTCCACAGCTTCCGCTGCTTCTTCTGCTGCTAATGGGCGGGGGTTTTCTACCTGGGTTTCGAGCGAAAGGGCTTCATTTGCCCGCGCCGCGGAGATTCCGGCCTCATTTCCTCCGAAATTTGCCAGTACCCGATGTGGGTCTGCTCTCTTTCTTAGAGGTTTCAGCGTGGAAGCTTCTTCCGCTGATCGAATGAGTCTCATTAAGCAGCTGAGGGAGCGAACCAGTGCGCCGATCAAAGACGTTAAGGCTGCTCTCATTGATAGCAATTGGGACATTGAGGCTGCTCAGAAGGAATTGAGGAGGAGAGGGAAGGTTTTGGCGTCGAAAAAGTCATCTCGGATGGCTGCCGAGGGCTTGCTGGCACTGGCTCAGAATGAGAACAAGGCTGCTGTTATTGAACTTAACTGTGAGACTGACTTTGTTGCTCGAAATGATATCTTTCAATACTTGGCCTTAGCTTTAGCAAAGAAAGCGTTGCTGGTTGAATGTTCTTCTCAACTGGTTTCTGGGGTCTTTAACATTGCCTCCAAGGAGTTGGAGGACTTGAAGTTAGATCTTGGACATCCAAAAGTTAGTGGAGAAACAACTGTTCAGAATGCAATTACAGAAGTAGCTGCAGTAATGGGGGAAAACGTTAAACTTAGAAGGGGTATTGTGATGTCTACATCTTCACATGGTGTTGTTTCTACCTACCTCCATACAAGTCCTCAACCAGGTTTAGGTCGTATTGCTGGAATTTTATCTCTTGCAGTAGAGGACAAAATTACTCAATTGGATCCTATCCAGCGCATTGGTTCACAATTGGCAATGCATGTGGTGGCAGCGAAGCCTTTGTTCTTAACAAAGGAACTTGTTTCTTCTGATGCATTAGAAAGTGAGCGTGAAATTCTTAAGTCTCAGGCTGAAAGTACAGGGAAGTCTCAAATGGCAATAGAGAAAATGGTGGAAGGTCGCTTGCGCAAGTACTATGAGGAAGTTGTCCTTATGGAGCAGAAGTTTATTATGGACGATACCATAACTATAAAGAAACTTTTAGAAAATCTGTCTAAGGAAGTCGGATCACCTGTGAAGATTGAGAGCTTTTTCAGGATGGAAGTGGGAGAAGGAATTCAGAGGCTAGAAGCATCTAGTACATCGGAACATGTGGCTCAGGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

414

Amino Acids

44.74

Weight (kDa)

9.0

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF_TS	PF00889	156 - 395	2.2e-54	Elongation factor TS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1040
AccI	GTMKAC	1 cut(s)	743
AccII	CGCG	2 cut(s)	165, 170
AciI	CCGC	6 cut(s)	93, 118, 163, 168, 170, 261
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	3 cut(s)	851, 864, 1147
AcsI	RAATTY	4 cut(s)	197, 816, 966, 1188
AcyI	GRCGYC	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	758
AfaI	GTAC	4 cut(s)	208, 991, 1046, 1213
AfiI	CCNNNNNNNGG	4 cut(s)	169, 216, 794, 800
AflII	CTTAAG	1 cut(s)	971
AflIII	ACRYGT	1 cut(s)	1222
AgsI	TTSAA	5 cut(s)	39, 479, 524, 566, 628
AjnI	CCWGG	2 cut(s)	131, 793
AluBI	AGCT	7 cut(s)	72, 89, 254, 289, 539, 695, 1161
AluI	AGCT	7 cut(s)	72, 89, 254, 289, 539, 695, 1161
Alw26I	GTCTC	4 cut(s)	281, 485, 981, 1005
AlwI	GGATC	3 cut(s)	851, 864, 1147
AoxI	GGCC	2 cut(s)	180, 531
ApoI	RAATTY	4 cut(s)	197, 816, 966, 1188
Asp700I	GAANNNNTTC	1 cut(s)	1188
AspLEI	GCGC	4 cut(s)	167, 310, 870, 1041
AsuHPI	GGTGA	1 cut(s)	1134
BamHI	GGATCC	1 cut(s)	856
BbvCI	CCTCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	415, 1165
BciT130I	CCWGG	2 cut(s)	133, 795
BcoDI	GTCTC	4 cut(s)	281, 485, 981, 1005
BfaI	CTAG	3 cut(s)	69, 1199, 1209
BfmI	CTRYAG	1 cut(s)	696
BfrI	CTTAAG	1 cut(s)	971
BglII	AGATCT	1 cut(s)	634
BmcAI	AGTACT	1 cut(s)	1046
Bme1390I	CCNGG	2 cut(s)	133, 795
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	2 cut(s)	133, 795
BmsI	GCATC	2 cut(s)	934, 1214
Bpu10I	CCTNAGC	3 cut(s)	290, 535, 1230
BsaHI	GRCGYC	1 cut(s)	401
BsaJI	CCNNGG	4 cut(s)	132, 168, 429, 609
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 1061, 1091
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 216, 794, 800
Bse1I	ACTGG	4 cut(s)	204, 303, 450, 585
Bse3DI	GCAATG	2 cut(s)	600, 894
BseBI	CCWGG	2 cut(s)	133, 795
BseDI	CCNNGG	4 cut(s)	132, 168, 429, 609
BseGI	GGATG	3 cut(s)	426, 643, 1176
BseLI	CCNNNNNNNGG	4 cut(s)	169, 216, 794, 800
BseMI	GCAATG	2 cut(s)	600, 894
BseMII	CTCAG	4 cut(s)	281, 380, 464, 992
BseNI	ACTGG	4 cut(s)	204, 303, 450, 585
BseRI	GAGGAG	2 cut(s)	394, 397
Bsh1236I	CGCG	2 cut(s)	165, 170
BshFI	GGCC	2 cut(s)	182, 533
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	4 cut(s)	169, 216, 794, 800
BsmAI	GTCTC	4 cut(s)	281, 485, 981, 1005
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	2 cut(s)	182, 533
Bsp143I	GATC	5 cut(s)	265, 312, 634, 856, 1139
BspACI	CCGC	6 cut(s)	93, 118, 163, 168, 170, 261
BspANI	GGCC	2 cut(s)	182, 533
BspCNI	CTCAG	4 cut(s)	282, 379, 463, 991
BspFNI	CGCG	2 cut(s)	165, 170
BspLI	GGNNCC	1 cut(s)	858
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	3 cut(s)	851, 864, 1147
BspTI	CTTAAG	1 cut(s)	971
BsrDI	GCAATG	2 cut(s)	600, 894
BsrI	ACTGG	4 cut(s)	204, 303, 450, 585
BssECI	CCNNGG	4 cut(s)	132, 168, 429, 609
BssMI	GATC	5 cut(s)	265, 312, 634, 856, 1139
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	133, 795
Bst4CI	ACNGT	2 cut(s)	488, 670
BstACI	GRCGYC	1 cut(s)	401
BstAFI	CTTAAG	1 cut(s)	971
BstC8I	GCNNGC	4 cut(s)	163, 437, 441, 1037
BstDEI	CTNAG	9 cut(s)	233, 290, 366, 450, 535, 722, 978, 1128, 1230
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	3 cut(s)	426, 643, 1176
BstFNI	CGCG	2 cut(s)	165, 170
BstHHI	GCGC	4 cut(s)	167, 310, 870, 1041
BstKTI	GATC	5 cut(s)	268, 315, 637, 859, 1142
BstMAI	GTCTC	4 cut(s)	281, 485, 981, 1005
BstMBI	GATC	5 cut(s)	265, 312, 634, 856, 1139
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 104, 158, 167, 260, 295, 551
BstNI	CCWGG	2 cut(s)	133, 795
BstNSI	RCATGY	2 cut(s)	896, 1226
BstSCI	CCNGG	2 cut(s)	131, 793
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	2 cut(s)	165, 170
BstX2I	RGATCY	2 cut(s)	634, 856
BstXI	CCANNNNNNTGG	2 cut(s)	616, 872
BstYI	RGATCY	2 cut(s)	634, 856
BsuRI	GGCC	2 cut(s)	182, 533
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	426, 643, 1176
BtsIMutI	CAGTG	2 cut(s)	310, 443
Cac8I	GCNNGC	4 cut(s)	163, 437, 441, 1037
CfoI	GCGC	4 cut(s)	167, 310, 870, 1041
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	1 cut(s)	390
CsiI	ACCWGGT	1 cut(s)	793
Csp6I	GTAC	4 cut(s)	207, 990, 1045, 1212
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	3 cut(s)	755, 893, 1223
CviQI	GTAC	4 cut(s)	207, 990, 1045, 1212
DdeI	CTNAG	9 cut(s)	233, 290, 366, 450, 535, 722, 978, 1128, 1230
DpnI	GATC	5 cut(s)	267, 314, 636, 858, 1141
DpnII	GATC	5 cut(s)	265, 312, 634, 856, 1139
DraIII	CACNNNGTG	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	609
Eco32I	GATATC	1 cut(s)	517
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	1188
EcoRII	CCWGG	2 cut(s)	131, 793
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	609
EcoT22I	ATGCAT	2 cut(s)	894, 949
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	3 cut(s)	758, 896, 1226
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	754, 892, 1222
FauI	CCCGC	2 cut(s)	111, 170
FblI	GTMKAC	1 cut(s)	743
FokI	GGATG	3 cut(s)	433, 630, 1183
FspBI	CTAG	3 cut(s)	69, 1199, 1209
FspI	TGCGCA	1 cut(s)	1040
GlaI	GCGC	4 cut(s)	166, 309, 869, 1040
HaeIII	GGCC	2 cut(s)	182, 533
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	4 cut(s)	167, 310, 870, 1041
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	3 cut(s)	758, 896, 1226
Hin6I	GCGC	4 cut(s)	165, 308, 868, 1039
HinP1I	GCGC	4 cut(s)	165, 308, 868, 1039
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	175, 274
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	1134
Hpy166II	GTNNAC	2 cut(s)	744, 878
Hpy188I	TCNGA	9 cut(s)	195, 369, 420, 453, 675, 943, 1139, 1194, 1219
Hpy188III	TCNNGA	1 cut(s)	1168
Hpy8I	GTNNAC	2 cut(s)	744, 878
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	5 cut(s)	364, 385, 720, 1022, 1178
HpyCH4III	ACNGT	2 cut(s)	488, 670
HpyCH4IV	ACGT	2 cut(s)	321, 714
HpyCH4V	TGCA	6 cut(s)	20, 680, 698, 830, 892, 947
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 104, 158, 167, 260, 295, 551
HpyF3I	CTNAG	9 cut(s)	233, 290, 366, 450, 535, 722, 978, 1128, 1230
HpySE526I	ACGT	2 cut(s)	321, 714
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	3 cut(s)	758, 896, 1226
HspAI	GCGC	4 cut(s)	165, 308, 868, 1039
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	5 cut(s)	265, 312, 634, 856, 1139
LmnI	GCTCC	2 cut(s)	295, 1069
LweI	GCATC	2 cut(s)	934, 1214
MabI	ACCWGGT	1 cut(s)	793
MaeI	CTAG	3 cut(s)	69, 1199, 1209
MaeII	ACGT	2 cut(s)	321, 714
MalI	GATC	5 cut(s)	267, 314, 636, 858, 1141
MboI	GATC	5 cut(s)	265, 312, 634, 856, 1139
MboII	GAAGA	7 cut(s)	72, 93, 249, 564, 741, 930, 1162
MfeI	CAATTG	3 cut(s)	346, 851, 881
MflI	RGATCY	2 cut(s)	634, 856
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	597, 1117
Mph1103I	ATGCAT	2 cut(s)	894, 949
MroXI	GAANNNNTTC	1 cut(s)	1188
MseI	TTAA	7 cut(s)	282, 324, 483, 597, 717, 920, 972
MspA1I	CMGCKG	4 cut(s)	95, 170, 263, 289
MspCI	CTTAAG	1 cut(s)	971
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	133, 795
MunI	CAATTG	3 cut(s)	346, 851, 881
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	2 cut(s)	133, 795
MvnI	CGCG	2 cut(s)	165, 170
MwoI	GCNNNNNNNGC	7 cut(s)	95, 104, 158, 167, 260, 295, 551
NdeII	GATC	5 cut(s)	265, 312, 634, 856, 1139
NlaIII	CATG	3 cut(s)	758, 896, 1226
NlaIV	GGNNCC	1 cut(s)	858
NmeAIII	GCCGAG	1 cut(s)	454
NsbI	TGCGCA	1 cut(s)	1040
NsiI	ATGCAT	2 cut(s)	894, 949
NspI	RCATGY	2 cut(s)	896, 1226
PciI	ACATGT	1 cut(s)	1222
PctI	GAATGC	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	1188
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PscI	ACATGT	1 cut(s)	1222
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	131, 793
PspGI	CCWGG	2 cut(s)	131, 793
PspN4I	GGNNCC	1 cut(s)	858
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	2 cut(s)	634, 856
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	4 cut(s)	208, 991, 1046, 1213
RsaNI	GTAC	4 cut(s)	207, 990, 1045, 1212
SacII	CCGCGG	1 cut(s)	171
SaqAI	TTAA	7 cut(s)	282, 324, 483, 597, 717, 920, 972
Sau3AI	GATC	5 cut(s)	265, 312, 634, 856, 1139
ScaI	AGTACT	1 cut(s)	1046
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	133, 795
SexAI	ACCWGGT	1 cut(s)	793
SfaNI	GCATC	2 cut(s)	934, 1214
SfcI	CTRYAG	1 cut(s)	696
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
SsiI	CCGC	6 cut(s)	93, 118, 163, 168, 170, 261
SspMI	CTAG	3 cut(s)	69, 1199, 1209
StyD4I	CCNGG	2 cut(s)	131, 793
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	2 cut(s)	488, 670
TaiI	ACGT	2 cut(s)	324, 717
TaqI	TCGA	4 cut(s)	140, 268, 404, 508
TatI	WGTACW	3 cut(s)	989, 1044, 1211
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	7 cut(s)	282, 324, 483, 597, 717, 920, 972
Tru9I	TTAA	7 cut(s)	282, 324, 483, 597, 717, 920, 972
TscAI	CASTG	2 cut(s)	310, 450
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	310, 450
Vha464I	CTTAAG	1 cut(s)	971
XagI	CCTNNNNNAGG	1 cut(s)	792
XapI	RAATTY	4 cut(s)	197, 816, 966, 1188
XceI	RCATGY	2 cut(s)	896, 1226
XmiI	GTMKAC	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	1188
XspI	CTAG	3 cut(s)	69, 1199, 1209
ZrmI	AGTACT	1 cut(s)	1046
Zsp2I	ATGCAT	2 cut(s)	894, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.