pycom10g00190

Uncharacterized protein conserved in bacteria (DUF2062)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0007285
Physical Location & Seq
Reverse (-)
284724 .. 286717
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGTCAGCAAGTAGTAATGGGGTGTCGATTTGGTTCAACAAGAAGGTGGTTGATCCCCTCCTCGAAATCCTCCGCAGGGGTGCAGAACCGAAGCTGTTGGCCTTCTCTGCGGCTCTTGGCCTTACCATTGGATTATTTCCAATATGCGGGACAACTGTGGTTCTGTGTGGAATGGCAATTGCATTGCTGCGATCGCACTGCCATGCTCCAACTGTCATGCTGGCTAATGTCCTTGCTACACCAATAGAACTGAGTTTGGTTGTACCTTTCTTGCGTTTTGGTGAATTTATCTCTGGTGGAGCTCATTTTCCTTTAACTTCTGACGCTTTCAAGAAAGTGTTAACTGGCCAAGCTTCATATGAGGTCTTAATAAGTATTGCTCATGCGTTGTTGGGATGGCTTGTTGCAGCTCCTTTAATTTTTGCCGCTCTGTACATGGCATTTTTACCATTGTTTAAGGTGTTGGTTCCCAAGTTCAGCGCTGTTCCTTTAAGCCCAAAGAAATCACTTTCAACCACAGAAGTCAGGCTTAAGGGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2062

Protein Analysis

181

Amino Acids

19.19

Weight (kDa)

9.62

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2062 PF09835 20 - 155 3.7e-06 Uncharacterized protein conserved in bacteria (DUF2062)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 4 cut(s) 73, 110, 147, 426
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 2 cut(s) 264, 434
AfeI AGCGCT 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 76, 146
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 3 cut(s) 37, 331, 513
AluBI AGCT 4 cut(s) 94, 302, 353, 410
AluI AGCT 4 cut(s) 94, 302, 353, 410
Alw21I GWGCWC 1 cut(s) 304
AlwI GGATC 1 cut(s) 47
Aor51HI AGCGCT 1 cut(s) 481
AoxI GGCC 3 cut(s) 99, 118, 346
ApeKI GCWGC 2 cut(s) 187, 407
ApoI RAATTY 1 cut(s) 284
AsiSI GCGATCGC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 293
BalI TGGCCA 1 cut(s) 348
BanII GRGCYC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 174, 419
BccI CCATC 1 cut(s) 390
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BfoI RGCGCY 1 cut(s) 483
BfrI CTTAAG 1 cut(s) 530
BisI GCNGC 4 cut(s) 111, 188, 408, 426
BlsI GCNGC 4 cut(s) 112, 189, 409, 427
BmiI GGNNCC 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 146
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 182
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 2 cut(s) 76, 146
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 174, 419
BsgI GTGCAG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 3 cut(s) 101, 120, 348
BsiEI CGRYCG 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 76, 146
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 3 cut(s) 101, 120, 348
Bsp1286I GDGCHC 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 2 cut(s) 52, 191
BspACI CCGC 4 cut(s) 73, 110, 147, 426
BspANI GGCC 3 cut(s) 101, 120, 348
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 468
BspPI GGATC 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 1 cut(s) 349
BssMI GATC 2 cut(s) 52, 191
Bst4CI ACNGT 2 cut(s) 157, 214
BstAFI CTTAAG 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 2 cut(s) 55, 194
BstMBI GATC 2 cut(s) 52, 191
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 107, 193
BstV1I GCAGC 2 cut(s) 174, 419
BsuRI GGCC 3 cut(s) 101, 120, 348
BtsCI GGATG 1 cut(s) 401
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 1 cut(s) 482
CseI GACGC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 263, 433
CviAII CATG 4 cut(s) 203, 217, 383, 436
CviQI GTAC 2 cut(s) 263, 433
DdeI CTNAG 1 cut(s) 251
DpnI GATC 2 cut(s) 54, 193
DpnII GATC 2 cut(s) 52, 191
EaeI YGGCCR 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 304
Eco47III AGCGCT 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 4 cut(s) 206, 220, 386, 439
FaiI YATR 7 cut(s) 145, 204, 218, 358, 360, 384, 437
FalI AAGNNNNNCTT 1 cut(s) 513
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 202, 216, 382, 435
FauI CCCGC 1 cut(s) 140
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 111, 188, 408, 426
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 4 cut(s) 111, 188, 408, 426
GlaI GCGC 1 cut(s) 481
GluI GCNGC 4 cut(s) 111, 188, 408, 426
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 3 cut(s) 101, 120, 348
HgaI GACGC 1 cut(s) 332
HhaI GCGC 1 cut(s) 482
Hin1II CATG 4 cut(s) 206, 220, 386, 439
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 351
HpaI GTTAAC 1 cut(s) 342
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 2 cut(s) 37, 112
HpyCH4III ACNGT 2 cut(s) 157, 214
HpyCH4V TGCA 3 cut(s) 83, 182, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 193
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 4 cut(s) 206, 220, 386, 439
HspAI GCGC 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 52, 191
LmnI GCTCC 3 cut(s) 211, 299, 415
LpnPI CCDG 5 cut(s) 61, 206, 279, 330, 511
Lsp1109I GCAGC 2 cut(s) 174, 419
MalI GATC 2 cut(s) 54, 193
MbiI CCGCTC 1 cut(s) 428
MboI GATC 2 cut(s) 52, 191
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 3 cut(s) 177, 284, 417
MluNI TGGCCA 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 4 cut(s) 68, 71, 80, 355
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 7 cut(s) 314, 341, 368, 416, 456, 491, 531
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 348
MspCI CTTAAG 1 cut(s) 530
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 107, 193
NdeI CATATG 1 cut(s) 358
NdeII GATC 2 cut(s) 52, 191
NlaIII CATG 4 cut(s) 206, 220, 386, 439
NlaIV GGNNCC 1 cut(s) 468
PkrI GCNGC 4 cut(s) 112, 189, 409, 427
Ple19I CGATCG 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 468
PvuI CGATCG 1 cut(s) 194
RgaI GCGATCGC 1 cut(s) 194
RsaI GTAC 2 cut(s) 264, 434
RsaNI GTAC 2 cut(s) 263, 433
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 7 cut(s) 314, 341, 368, 416, 456, 491, 531
SatI GCNGC 4 cut(s) 111, 188, 408, 426
Sau3AI GATC 2 cut(s) 52, 191
SduI GDGCHC 1 cut(s) 304
SetI ASST 8 cut(s) 48, 96, 268, 304, 355, 366, 412, 462
SfaAI GCGATCGC 1 cut(s) 194
SgfI GCGATCGC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 3 cut(s) 177, 284, 417
SsiI CCGC 4 cut(s) 73, 110, 147, 426
SstI GAGCTC 1 cut(s) 304
TaaI ACNGT 2 cut(s) 157, 214
TaqI TCGA 2 cut(s) 26, 63
TasI AATT 3 cut(s) 177, 284, 417
TatI WGTACW 1 cut(s) 432
TauI GCSGC 2 cut(s) 113, 428
Tru1I TTAA 7 cut(s) 314, 341, 368, 416, 456, 491, 531
Tru9I TTAA 7 cut(s) 314, 341, 368, 416, 456, 491, 531
TscAI CASTG 1 cut(s) 203
TseI GCWGC 2 cut(s) 187, 407
TspDTI ATGAA 1 cut(s) 345
TspRI CASTG 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 530
XapI RAATTY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.