pycom10g00210

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
297948 .. 300103
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1524 bp
ATGACATTGAAGAAATGTCAAATAGTAGCTCGGTTGTTCTTACAACCGTGCTCAAGCTCATTGACAAGTATCGATCTGTATGGGCAAGTGGCCTATCCTAAGCATCACAAGCAATCAGATGTACCTGACATATATCGTCTAGCTGCAAAAACAAAGGGAGTTTTCGTCAACCCAGCTCTCGTGGAACCTTTCGGGCTCACAATTATAGAGGCAGCTGCTTACGGTTTACCAGTGGTCGCCACCAAAAATGGCGGACCTGTGGATATTCTGAAGGCACTAAACAACGGCCTCCTAGTTGACCCACATGACCAGAAAGCCATAGAAGAGGCACTGCTAAAGCTTGTAGGAGACAAAAACCTGTGGCTCGAATGCAGAAAGAACGGCCTAAAGAACATCCACCGCTTTTCGTGGCCGGAACACTGCCGGAACTACCTCTCCCATGTTGAACATTCCCGAAACCGTCACCCCACTACCCGCCTTCAGATCACGCCAATTCCTGAAGAACCATTGAGTGACTCTCTAAAAGATGTGGAAGACCTTTCTTTGAGATTCTCTGTAGAAGGAGACTTCAAGCATAATGGAGAGCTCGATGCAGCAACTAGACAGAGGGAACTGATTGAAGCCATAACTAGAATGTCTTCGTCCAGTAGCGATATCGGTGCTACTTATGGTCCTGGCAGAAGGCAGAGGCTATTTGTAATAGCCGTGGATTGTTATGACCAGAATGGAGACGGCACCCAAGTATTTCAAGAAGTTCTAGTGAATGTAAAGAAAGTAGCAAGCTTAGGCTATGGCCAGGGTCGAGTAGGCATTGTGTTGTTAACTGGTTCCAGCTTACAAGATATCGTCAAAGCGTTTAAAGGCTGCCAAATAAACATTGAAGATTTTGACGCGTTGGTCTGCAAAAGTGGGGGTGAAATGTACTACCCGTGGAGGGATTTGGCAGCTGACGCAGATTATGAAACCCATATTGAGTACAGATGGCCTGGCGAGAATGTGAGGTCCATGGTTCCAAGGCTTGCCAGGCTAGAAGTTGGGGATGATGACGATATCGTGGAGTATGCTGGATCAAGTAGCTCTAGGTGCTACTCTTATAGTGTGAGGCCAGGAGCCAAGACTCGACGGGTTGATGACCTACGCCAACGGCTGCGGATGAGAGGCTTCCGATGCAACCTTGTCTACACTCGTGCAGCATCAAGGTTAAATGTTGTACCCCTAGTTGCATCAAGAGTACAAGCACTAAGATATCTTTCCGTCAGGTGGGCCATTGATCTGTCAAAAGTGGTTGTATTTGTTGGGGAAAAAGGAGATACAGACATTGAAGACCTGCTGGCCGGCCTCCACAAGACCCTTGTTCTAAGAGGTTCTGTTGAGTATGGCAGCGAGAAGCTTATTCACGGTGAAGATAGTTTCAAAAGAGAAGATGTAGTCCCACAAGATAGCCCTAACATTGCCCTTGTGGAGAGCTATCAAGCCCATGACATCTCAGCGGCACTTGAAGCACTTGGGATCAAGGGATTTTAG

Protein Analysis

508

Amino Acids

56.5

Weight (kDa)

6.69

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_1 PF00534 29 - 129 4.8e-19 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 39 - 117 2.3e-14 Glycosyl transferases group 1
S6PP PF05116 266 - 439 9.1e-19 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 896
Acc36I ACCTGC 1 cut(s) 1335
AccB1I GGYRCC 1 cut(s) 734
AccI GTMKAC 1 cut(s) 1179
AccII CGCG 1 cut(s) 893
AciI CCGC 5 cut(s) 252, 400, 475, 1150, 1490
AclWI GGATC 2 cut(s) 1075, 1517
AcoI YGGCCR 3 cut(s) 410, 793, 1332
AcuI CTGAAG 3 cut(s) 290, 464, 519
AfaI GTAC 5 cut(s) 123, 923, 977, 1212, 1233
AfiI CCNNNNNNNGG 2 cut(s) 934, 1260
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 9 cut(s) 10, 446, 571, 620, 749, 881, 1322, 1414, 1499
AjnI CCWGG 5 cut(s) 673, 795, 985, 1022, 1105
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
Alw21I GWGCWC 2 cut(s) 53, 588
Alw26I GTCTC 3 cut(s) 342, 558, 723
AlwI GGATC 2 cut(s) 1075, 1517
ApeKI GCWGC 9 cut(s) 143, 212, 215, 593, 864, 944, 1147, 1190, 1380
Asp700I GAANNNNTTC 1 cut(s) 637
AspS9I GGNCC 4 cut(s) 254, 671, 1002, 1263
AsuHPI GGTGA 3 cut(s) 455, 926, 1412
AvaII GGWCC 3 cut(s) 254, 671, 1002
BalI TGGCCA 1 cut(s) 795
BanI GGYRCC 1 cut(s) 734
BanII GRGCYC 2 cut(s) 198, 588
BauI CACGAG 2 cut(s) 179, 1185
BbsI GAAGAC 3 cut(s) 540, 630, 1329
Bbv12I GWGCWC 2 cut(s) 53, 588
BbvI GCAGC 9 cut(s) 130, 202, 224, 605, 851, 956, 1134, 1202, 1392
BccI CCATC 1 cut(s) 975
BceAI ACGGC 5 cut(s) 301, 397, 689, 748, 1160
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BciT130I CCWGG 5 cut(s) 675, 797, 987, 1024, 1107
BcoDI GTCTC 3 cut(s) 342, 558, 723
BfaI CTAG 8 cut(s) 140, 293, 600, 630, 758, 1028, 1080, 1217
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 1335
Bme1390I CCNGG 5 cut(s) 675, 797, 987, 1024, 1107
Bme18I GGWCC 3 cut(s) 254, 671, 1002
BmgT120I GGNCC 4 cut(s) 254, 671, 1002, 1263
BmiI GGNNCC 5 cut(s) 186, 736, 829, 1011, 1111
BmrFI CCNGG 5 cut(s) 675, 797, 987, 1024, 1107
BmsI GCATC 5 cut(s) 112, 580, 1157, 1202, 1232
BpiI GAAGAC 3 cut(s) 540, 630, 1329
BplI GAGNNNNNCTC 2 cut(s) 502, 534
Bpu10I CCTNAGC 2 cut(s) 99, 784
BpuEI CTTGAG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 5 cut(s) 705, 796, 929, 1005, 1013
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 934, 1260
Bse118I RCCGGY 1 cut(s) 1334
Bse1I ACTGG 3 cut(s) 230, 645, 829
Bse3DI GCAATG 1 cut(s) 1449
BseBI CCWGG 5 cut(s) 675, 797, 987, 1024, 1107
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 5 cut(s) 705, 796, 929, 1005, 1013
BseGI GGATG 3 cut(s) 393, 1045, 1158
BseLI CCNNNNNNNGG 2 cut(s) 934, 1260
BseMI GCAATG 1 cut(s) 1449
BseMII CTCAG 1 cut(s) 1500
BseNI ACTGG 3 cut(s) 230, 645, 829
BseXI GCAGC 9 cut(s) 130, 202, 224, 605, 851, 956, 1134, 1202, 1392
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 1209
Bsh1236I CGCG 1 cut(s) 893
BshNI GGYRCC 1 cut(s) 734
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 53, 588
BsiSI CCGG 3 cut(s) 413, 424, 1335
BslFI GGGAC 1 cut(s) 1415
BslI CCNNNNNNNGG 2 cut(s) 934, 1260
BsmAI GTCTC 3 cut(s) 342, 558, 723
BsmBI CGTCTC 1 cut(s) 723
BsmFI GGGAC 1 cut(s) 1415
BsmI GAATGC 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 53, 198, 588
Bsp143I GATC 5 cut(s) 73, 483, 1067, 1270, 1509
Bsp19I CCATGG 1 cut(s) 1005
BspACI CCGC 5 cut(s) 252, 400, 475, 1150, 1490
BspCNI CTCAG 1 cut(s) 1499
BspDI ATCGAT 1 cut(s) 72
BspFNI CGCG 1 cut(s) 893
BspLI GGNNCC 5 cut(s) 186, 736, 829, 1011, 1111
BspMI ACCTGC 1 cut(s) 1335
BspPI GGATC 2 cut(s) 1075, 1517
BspT107I GGYRCC 1 cut(s) 734
BsrDI GCAATG 1 cut(s) 1449
BsrFI RCCGGY 1 cut(s) 1334
BsrI ACTGG 3 cut(s) 230, 645, 829
BssAI RCCGGY 1 cut(s) 1334
BssECI CCNNGG 5 cut(s) 705, 796, 929, 1005, 1013
BssMI GATC 5 cut(s) 73, 483, 1067, 1270, 1509
BssSI CACGAG 2 cut(s) 179, 1185
BssT1I CCWWGG 2 cut(s) 1005, 1013
Bst2BI CACGAG 2 cut(s) 179, 1185
Bst2UI CCWGG 5 cut(s) 675, 797, 987, 1024, 1107
Bst4CI ACNGT 4 cut(s) 48, 224, 461, 1400
Bst6I CTCTTC 1 cut(s) 318
BstC8I GCNNGC 4 cut(s) 781, 1020, 1332, 1336
BstDEI CTNAG 5 cut(s) 99, 784, 1241, 1358, 1486
BstDSI CCRYGG 3 cut(s) 705, 929, 1005
BstF5I GGATG 3 cut(s) 393, 1045, 1158
BstFNI CGCG 1 cut(s) 893
BstKTI GATC 5 cut(s) 76, 486, 1070, 1273, 1512
BstMAI GTCTC 3 cut(s) 342, 558, 723
BstMBI GATC 5 cut(s) 73, 483, 1067, 1270, 1509
BstMWI GCNNNNNNNGC 6 cut(s) 109, 950, 1024, 1083, 1167, 1499
BstNI CCWGG 5 cut(s) 675, 797, 987, 1024, 1107
BstSCI CCNGG 5 cut(s) 673, 795, 985, 1022, 1105
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 893
BstV1I GCAGC 9 cut(s) 130, 202, 224, 605, 851, 956, 1134, 1202, 1392
BstV2I GAAGAC 3 cut(s) 540, 630, 1329
Bsu15I ATCGAT 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 3 cut(s) 705, 929, 1005
BtsCI GGATG 3 cut(s) 393, 1045, 1158
BtsI GCAGTG 2 cut(s) 329, 418
BtsIMutI CAGTG 3 cut(s) 237, 329, 418
BveI ACCTGC 1 cut(s) 1335
Cac8I GCNNGC 4 cut(s) 781, 1020, 1332, 1336
Cfr10I RCCGGY 1 cut(s) 1334
Cfr13I GGNCC 4 cut(s) 254, 671, 1002, 1263
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 2 cut(s) 899, 959
Csp6I GTAC 5 cut(s) 122, 922, 976, 1211, 1232
CviAII CATG 4 cut(s) 305, 440, 1006, 1478
CviQI GTAC 5 cut(s) 122, 922, 976, 1211, 1232
DdeI CTNAG 5 cut(s) 99, 784, 1241, 1358, 1486
DpnI GATC 5 cut(s) 75, 485, 1069, 1272, 1511
DpnII GATC 5 cut(s) 73, 483, 1067, 1270, 1509
DraI TTTAAA 1 cut(s) 859
DrdI GACNNNNNNGTC 1 cut(s) 896
DseDI GACNNNNNNGTC 1 cut(s) 896
EaeI YGGCCR 3 cut(s) 410, 793, 1332
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 2 cut(s) 1005, 1013
Eco24I GRGCYC 2 cut(s) 198, 588
Eco32I GATATC 4 cut(s) 655, 844, 1051, 1247
Eco47I GGWCC 3 cut(s) 254, 671, 1002
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 3 cut(s) 290, 464, 519
EcoICRI GAGCTC 1 cut(s) 586
EcoRII CCWGG 5 cut(s) 673, 795, 985, 1022, 1105
EcoRV GATATC 4 cut(s) 655, 844, 1051, 1247
EcoT14I CCWWGG 2 cut(s) 1005, 1013
EcoT38I GRGCYC 2 cut(s) 198, 588
ErhI CCWWGG 2 cut(s) 1005, 1013
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 4 cut(s) 308, 443, 1009, 1481
FaqI GGGAC 1 cut(s) 1415
FatI CATG 4 cut(s) 304, 439, 1005, 1477
FauI CCCGC 1 cut(s) 482
FblI GTMKAC 1 cut(s) 1179
FokI GGATG 3 cut(s) 380, 1052, 1165
FriOI GRGCYC 2 cut(s) 198, 588
FseI GGCCGGCC 1 cut(s) 1338
FspBI CTAG 8 cut(s) 140, 293, 600, 630, 758, 1028, 1080, 1217
GsaI CCCAGC 1 cut(s) 176
HapII CCGG 3 cut(s) 413, 424, 1335
HgaI GACGC 2 cut(s) 899, 959
Hin1II CATG 4 cut(s) 308, 443, 1009, 1481
HincII GTYRAC 3 cut(s) 169, 298, 822
HindII GTYRAC 3 cut(s) 169, 298, 822
HindIII AAGCTT 3 cut(s) 338, 781, 1388
HinfI GANTC 3 cut(s) 515, 549, 1117
HpaI GTTAAC 1 cut(s) 822
HpaII CCGG 3 cut(s) 413, 424, 1335
HphI GGTGA 3 cut(s) 455, 926, 1412
Hpy166II GTNNAC 5 cut(s) 169, 227, 298, 822, 1180
Hpy188I TCNGA 4 cut(s) 118, 270, 483, 1166
Hpy188III TCNNGA 4 cut(s) 453, 497, 749, 1227
Hpy8I GTNNAC 5 cut(s) 169, 227, 298, 822, 1180
Hpy99I CGWCG 1 cut(s) 1125
HpyAV CCTTC 4 cut(s) 265, 488, 554, 675
HpyCH4III ACNGT 4 cut(s) 48, 224, 461, 1400
HpyCH4V TGCA 7 cut(s) 146, 372, 593, 903, 1170, 1190, 1223
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 950, 1024, 1083, 1167, 1499
HpyF3I CTNAG 5 cut(s) 99, 784, 1241, 1358, 1486
Hsp92II CATG 4 cut(s) 308, 443, 1009, 1481
KroI GCCGGC 1 cut(s) 1334
KroNI GCCGGC 1 cut(s) 1336
KspAI GTTAAC 1 cut(s) 822
Kzo9I GATC 5 cut(s) 73, 483, 1067, 1270, 1509
LmnI GCTCC 1 cut(s) 1109
Lsp1109I GCAGC 9 cut(s) 130, 202, 224, 605, 851, 956, 1134, 1202, 1392
LweI GCATC 5 cut(s) 112, 580, 1157, 1202, 1232
MaeI CTAG 8 cut(s) 140, 293, 600, 630, 758, 1028, 1080, 1217
MaeIII GTNAC 2 cut(s) 461, 512
MalI GATC 5 cut(s) 75, 485, 1069, 1272, 1511
MboI GATC 5 cut(s) 73, 483, 1067, 1270, 1509
MboII GAAGA 9 cut(s) 22, 335, 512, 545, 630, 893, 1334, 1415, 1433
MhlI GDGCHC 3 cut(s) 53, 198, 588
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 2 cut(s) 201, 492
MluI ACGCGT 1 cut(s) 891
MluNI TGGCCA 1 cut(s) 795
MlyI GAGTC 2 cut(s) 509, 1111
Mox20I TGGCCA 1 cut(s) 795
MroNI GCCGGC 1 cut(s) 1334
MroXI GAANNNNTTC 1 cut(s) 637
MscI TGGCCA 1 cut(s) 795
MseI TTAA 3 cut(s) 821, 858, 1202
Msp20I TGGCCA 1 cut(s) 795
MspA1I CMGCKG 3 cut(s) 215, 947, 1490
MspI CCGG 3 cut(s) 413, 424, 1335
MspR9I CCNGG 5 cut(s) 675, 797, 987, 1024, 1107
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 5 cut(s) 675, 797, 987, 1024, 1107
MvnI CGCG 1 cut(s) 893
MwoI GCNNNNNNNGC 6 cut(s) 109, 950, 1024, 1083, 1167, 1499
NaeI GCCGGC 1 cut(s) 1336
NcoI CCATGG 1 cut(s) 1005
NdeII GATC 5 cut(s) 73, 483, 1067, 1270, 1509
NgoMIV GCCGGC 1 cut(s) 1334
NlaIII CATG 4 cut(s) 308, 443, 1009, 1481
NlaIV GGNNCC 5 cut(s) 186, 736, 829, 1011, 1111
NmuCI GTSAC 2 cut(s) 461, 512
PctI GAATGC 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 1336
PdmI GAANNNNTTC 1 cut(s) 637
PfeI GAWTC 1 cut(s) 549
PleI GAGTC 2 cut(s) 509, 1111
PpsI GAGTC 2 cut(s) 509, 1111
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 5 cut(s) 673, 795, 985, 1022, 1105
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 5 cut(s) 673, 795, 985, 1022, 1105
PspN4I GGNNCC 5 cut(s) 186, 736, 829, 1011, 1111
PspPI GGNCC 4 cut(s) 254, 671, 1002, 1263
PvuII CAGCTG 2 cut(s) 215, 947
RigI GGCCGGCC 1 cut(s) 1338
RsaI GTAC 5 cut(s) 123, 923, 977, 1212, 1233
RsaNI GTAC 5 cut(s) 122, 922, 976, 1211, 1232
SacI GAGCTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 821, 858, 1202
Sau3AI GATC 5 cut(s) 73, 483, 1067, 1270, 1509
Sau96I GGNCC 4 cut(s) 254, 671, 1002, 1263
SchI GAGTC 2 cut(s) 509, 1111
ScrFI CCNGG 5 cut(s) 675, 797, 987, 1024, 1107
SduI GDGCHC 3 cut(s) 53, 198, 588
SfaNI GCATC 5 cut(s) 112, 580, 1157, 1202, 1232
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 3 cut(s) 254, 671, 1002
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 201, 492
SsiI CCGC 5 cut(s) 252, 400, 475, 1150, 1490
SspMI CTAG 8 cut(s) 140, 293, 600, 630, 758, 1028, 1080, 1217
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 5 cut(s) 673, 795, 985, 1022, 1105
StyI CCWWGG 2 cut(s) 1005, 1013
TaaI ACNGT 4 cut(s) 48, 224, 461, 1400
TaqI TCGA 5 cut(s) 72, 366, 588, 802, 1120
TasI AATT 2 cut(s) 201, 492
TatI WGTACW 3 cut(s) 921, 975, 1231
TauI GCSGC 1 cut(s) 1493
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 3 cut(s) 821, 858, 1202
Tru9I TTAA 3 cut(s) 821, 858, 1202
TscAI CASTG 3 cut(s) 237, 336, 425
TseFI GTSAC 2 cut(s) 461, 512
TseI GCWGC 9 cut(s) 143, 212, 215, 593, 864, 944, 1147, 1190, 1380
Tsp45I GTSAC 2 cut(s) 461, 512
TspDTI ATGAA 1 cut(s) 975
TspGWI ACGGA 1 cut(s) 1243
TspRI CASTG 3 cut(s) 237, 336, 425
VpaK11BI GGWCC 3 cut(s) 254, 671, 1002
XmiI GTMKAC 1 cut(s) 1179
XmnI GAANNNNTTC 1 cut(s) 637
XspI CTAG 8 cut(s) 140, 293, 600, 630, 758, 1028, 1080, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.