Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029595.1

Orthogroup ID

OG0006699

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 988

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atagcatgggatgatgctcgcagacttgcaagacgacgtctggagagggagcaaggccgccatgatgctgccgaggacctttcagagctgtctgaaggggagaaggaaaaaggtgacaccaattttacagaaccgcctgtcaagcaaattgcaagaatcaactcagaaatgcgattgtggtctgaggatgacaacaagactaggcatctttacattgtcttaatcagtatgcatgggttggttcgtggagaaaacatggaacttggaagagattctgatacaggtggtcaggtgaagtatgtagtggaacttgctcgtgctctggccaatacaaaaggagtctatagagttgatctgttaacaaggcaaatcacttcaccggaggtagactccagctacggtgaacctaatgagatgctcatttgcccacctgatggcagcgggagctgtggagcctacattgtccgccttccatgtggaccccgcgacaagtacttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0008194 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0044464 GO:0046524 GO:0046527 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_trans_4_4 Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

166

Amino Acids

18.73

Weight (kDa)

5.33

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10120 AT4G10120 AT4G10120 AT4G10120 AT4G10120
fragaria_vesca	FvH4_2g00340 FvH4_2g00340 FvH4_2g00340
malus_domestica	MD05G1006400.v1.1 MD10G1002300.v1.1 MD10G1002500.v1.1
prunus_persica	Prupe.8G003700_v2.0.a1
pyrus_communis	pycom05g00160 pycom10g00210
rosa_chinensis	RchiOBHm_Chr6g0249631
rosa_laevigata	RLG00000015556
rosa_multiflora	Rmu_sc0006936.1_g000016 Rmu_sc0029595.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217470
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004100 Rh6BG006100 Rh6CG003100 Rh6DG002900
rosa_wichuraiana	Rw6G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	499
AatII	GACGTC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	486
AciI	CCGC	5 cut(s)	58, 134, 441, 466, 484
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	88, 396, 447
AluI	AGCT	3 cut(s)	88, 396, 447
Alw21I	GWGCWC	1 cut(s)	322
AoxI	GGCC	2 cut(s)	55, 324
ApeKI	GCWGC	2 cut(s)	68, 438
Asp700I	GAANNNNTTC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	76, 479
AsuHPI	GGTGA	4 cut(s)	125, 304, 369, 413
AvaII	GGWCC	2 cut(s)	76, 479
BalI	TGGCCA	1 cut(s)	326
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	55, 450
BccI	CCATC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	3 cut(s)	58, 69, 439
BlsI	GCNGC	3 cut(s)	59, 70, 440
BmcAI	AGTACT	1 cut(s)	494
Bme18I	GGWCC	2 cut(s)	76, 479
BmgT120I	GGNCC	2 cut(s)	76, 479
BmiI	GGNNCC	2 cut(s)	454, 481
BmsI	GCATC	4 cut(s)	4, 55, 214, 405
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	2 cut(s)	62, 376
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	16, 193
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	174, 177
BseXI	GCAGC	2 cut(s)	55, 450
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	57, 326
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	434
BsnI	GGCC	2 cut(s)	57, 326
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	5 cut(s)	58, 134, 441, 466, 484
BspANI	GGCC	2 cut(s)	57, 326
BspCNI	CTCAG	2 cut(s)	175, 176
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	454, 481
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	37
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	163, 183
BstF5I	GGATG	2 cut(s)	16, 193
BstFNI	CGCG	1 cut(s)	486
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 444
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	55, 450
BsuRI	GGCC	2 cut(s)	57, 326
BtsCI	GGATG	2 cut(s)	16, 193
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	76, 479
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	5 cut(s)	6, 62, 233, 256, 474
CviJI	RGCY	6 cut(s)	57, 88, 326, 396, 447, 455
CviKI_1	RGCY	6 cut(s)	57, 88, 326, 396, 447, 455
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	2 cut(s)	163, 183
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EciI	GGCGGA	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	76, 479
Eco57I	CTGAAG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	234
FaeI	CATG	5 cut(s)	9, 65, 236, 259, 477
FaiI	YATR	9 cut(s)	7, 63, 230, 234, 257, 300, 345, 475, 499
FatI	CATG	5 cut(s)	5, 61, 232, 255, 473
FauI	CCCGC	2 cut(s)	434, 491
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	58, 69, 439
FokI	GGATG	2 cut(s)	23, 200
Fsp4HI	GCNGC	3 cut(s)	58, 69, 439
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	3 cut(s)	58, 69, 439
GsuI	CTGGAG	2 cut(s)	62, 376
HaeIII	GGCC	2 cut(s)	57, 326
HapII	CCGG	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	5 cut(s)	9, 65, 236, 259, 477
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	4 cut(s)	156, 272, 339, 389
HpaI	GTTAAC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	4 cut(s)	125, 304, 369, 413
Hpy166II	GTNNAC	4 cut(s)	360, 388, 404, 479
Hpy188I	TCNGA	5 cut(s)	85, 94, 166, 184, 277
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	4 cut(s)	360, 388, 404, 479
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	89, 97, 479
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	29, 152, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 444
HpyF3I	CTNAG	2 cut(s)	163, 183
HpySE526I	ACGT	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	5 cut(s)	9, 65, 236, 259, 477
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	3 cut(s)	49, 444, 452
LpnPI	CCDG	8 cut(s)	26, 150, 267, 275, 308, 393, 406, 444
Lsp1109I	GCAGC	2 cut(s)	55, 450
LweI	GCATC	4 cut(s)	4, 55, 214, 405
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	2 cut(s)	121, 147
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	348, 383
MnlI	CCTC	4 cut(s)	39, 67, 178, 376
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	2 cut(s)	221, 359
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	142, 444
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	5 cut(s)	9, 65, 236, 259, 477
NlaIV	GGNNCC	2 cut(s)	454, 481
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	156, 272
PflFI	GACNNNGTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	59, 70, 440
PleI	GAGTC	2 cut(s)	347, 383
PpsI	GAGTC	2 cut(s)	347, 383
PpuMI	RGGWCCY	1 cut(s)	76
PsiI	TTATAA	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	454, 481
PspPI	GGNCC	2 cut(s)	76, 479
PspPPI	RGGWCCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	2 cut(s)	221, 359
SatI	GCNGC	3 cut(s)	58, 69, 439
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	76, 479
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	2 cut(s)	348, 383
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	4 cut(s)	4, 55, 214, 405
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	76, 479
Sse9I	AATT	2 cut(s)	121, 147
SsiI	CCGC	5 cut(s)	58, 134, 441, 466, 484
SspMI	CTAG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	40
TasI	AATT	2 cut(s)	121, 147
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	156, 272
Tru1I	TTAA	2 cut(s)	221, 359
Tru9I	TTAA	2 cut(s)	221, 359
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	68, 438
Tsp45I	GTSAC	1 cut(s)	113
Tth111I	GACNNNGTC	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	76, 479
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	1 cut(s)	201
ZraI	GACGTC	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.