pycom10g00810

psbP domain-containing protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014267
Physical Location & Seq
Reverse (-)
893563 .. 895120
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 999 bp
ATGCTATTCTTCAAAGTTCCACGTGTATTCTTTGGAAAAATCCAAGATTTGTGCACCACAAATACTCAAAAAATCAGAAGCACCGAGAACCTCAACTTCCACACGGTTCTATTGGTCTTAAATTTATCTGGTCGCAAGCTGAAAAATTTACTGAAATTCTCGCTTGTTTCTTGTGCTAGTAAAGTGGTAGAGGAAATGACAACAGCCTTGCTTATCAGTTGCAGATTTTCGCACAGTTTGGTTGTGCAGTCTGCATTTGAACGTGGAACTTGCAGGACAAAAGCTGCCTCAAGTTCAACAGAAAATGGTTTCGTTGAGGGAGAAGCTGATAAATTCTCCGGGATTTTGAAGAGACGATCAGTGTTGCTGTCCGCAGGAGTTTCTTTGCTTTCTTCTCAAGTGTTTGGTTTTCCGAGAGAGGGATTGGCAGTGGTGAAACAAGGTCTTCTGGCCGGCCGGATTCCCGGTCTGTCCGAACCGGATGAGCAAGGTTGGAGGACATACCGGAGACCGGATGAGAAGTCCGGAGGGCACGGCGTTGGTTGGAGCCCTATCATCCCTTATCTCTTTTCAGTTCCTCAAGACTGGGAAGAGGTTCCAGTATCAATAGCGGATCTAGGCGGTACAGAGATCGATTTGAGATTTGGTAGCCCCAAGGAGGGACGCATTTCTGTCATTGTTGCTCCCGTTCTGAGATTTGCAGATAATCTTGATGGAGATGCCACAATTGAAAAAATTGGACGTCCAGAGACAGTGATCAACGCATTTGGACCGGAAGTTATTGGCGAAAATGTTGAAGGAAAGGTTATGAGCATAAATGTCGTACAAGACTCTGGAAGAACATATTACCAGTATGAGTTGGAGCCACCTCATGCACTGATAACAGCAACCGCAGCTGGGAACCGCCTGTACTTGTTTAACGTAACTGGAAGTGGTCTTCAGTGGAAGAGGCATTACAAGGACTTGAAAAAAATAGCCGACTCCTTTCGTGTCGTCTAA

Protein Analysis

333

Amino Acids

36.57

Weight (kDa)

8.95

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 188 - 331 7.3e-12 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014267)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77090
fragaria_vesca FvH4_2g14791
malus_domestica MD05G1012500.v1.1 MD10G1012400.v1.1
prunus_persica Prupe.8G017800_v2.0.a1
pyrus_communis pycom10g00810
rosa_chinensis RchiOBHm_Chr6g0277361
rosa_laevigata RLG00000013307 RLG00000029732
rosa_multiflora Rmu_sc0000030.1_g000012
rosa_roxburghii Rroxscaffold_7G00191400
rosa_rugosa Rorug01G0093300
rosa_samantha Rh6AG218500 Rh6BG222200 Rh6CG225000 Rh6DG215200
rosa_wichuraiana Rw6G019140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 745
AccIII TCCGGA 1 cut(s) 524
AciI CCGC 5 cut(s) 372, 611, 621, 891, 904
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 2 cut(s) 450, 454
AcsI RAATTY 4 cut(s) 121, 145, 155, 332
AcuI CTGAAG 1 cut(s) 923
AcvI CACGTG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 742
AfaI GTAC 3 cut(s) 625, 825, 911
AfiI CCNNNNNNNGG 5 cut(s) 419, 511, 658, 659, 897
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 7 cut(s) 13, 260, 297, 349, 731, 797, 967
AluBI AGCT 4 cut(s) 139, 284, 326, 896
AluI AGCT 4 cut(s) 139, 284, 326, 896
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 3 cut(s) 346, 502, 743
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 1 cut(s) 621
Aor13HI TCCGGA 1 cut(s) 524
AoxI GGCC 2 cut(s) 450, 454
ApaLI GTGCAC 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 284, 893
ApoI RAATTY 4 cut(s) 121, 145, 155, 332
Asp700I GAANNNNTTC 1 cut(s) 594
AspS9I GGNCC 1 cut(s) 770
AsuC2I CCSGG 2 cut(s) 340, 465
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 1 cut(s) 770
BaeGI GKGCMC 2 cut(s) 56, 534
BanII GRGCYC 1 cut(s) 551
BarI GAAGNNNNNNTAC 2 cut(s) 938, 970
BbrPI CACGTG 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 437, 929
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 271, 905
BccI CCATC 1 cut(s) 707
BceAI ACGGC 1 cut(s) 550
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 2 cut(s) 340, 465
BcoDI GTCTC 3 cut(s) 346, 502, 743
BfaI CTAG 2 cut(s) 177, 617
BisI GCNGC 2 cut(s) 285, 894
BlsI GCNGC 2 cut(s) 286, 895
Bme1390I CCNGG 2 cut(s) 340, 465
Bme18I GGWCC 1 cut(s) 770
BmgT120I GGNCC 1 cut(s) 770
BmiI GGNNCC 4 cut(s) 548, 597, 864, 902
BmrFI CCNGG 2 cut(s) 340, 465
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 1 cut(s) 709
BmuI ACTGGG 1 cut(s) 595
BpiI GAAGAC 2 cut(s) 437, 929
BpuEI CTTGAG 3 cut(s) 274, 381, 564
BpuMI CCSGG 2 cut(s) 340, 465
Bsa29I ATCGAT 1 cut(s) 633
BsaAI YACGTR 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 742
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 1 cut(s) 654
BsaWI WCCGGW 5 cut(s) 478, 504, 511, 524, 772
Bsc4I CCNNNNNNNGG 5 cut(s) 419, 511, 658, 659, 897
Bse118I RCCGGY 1 cut(s) 452
Bse1I ACTGG 4 cut(s) 590, 599, 850, 931
BseAI TCCGGA 1 cut(s) 524
BseCI ATCGAT 1 cut(s) 633
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 3 cut(s) 487, 520, 555
BseLI CCNNNNNNNGG 5 cut(s) 419, 511, 658, 659, 897
BseMII CTCAG 1 cut(s) 683
BseNI ACTGG 4 cut(s) 590, 599, 850, 931
BseSI GKGCMC 2 cut(s) 56, 534
BseX3I CGGCCG 1 cut(s) 454
BseXI GCAGC 2 cut(s) 271, 905
BseYI CCCAGC 1 cut(s) 896
BsgI GTGCAG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 452, 456
BshVI ATCGAT 1 cut(s) 633
BsiEI CGRYCG 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 9 cut(s) 339, 453, 457, 465, 479, 505, 512, 525, 773
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 5 cut(s) 419, 511, 658, 659, 897
BsmAI GTCTC 3 cut(s) 346, 502, 743
BsmBI CGTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 675
BsnI GGCC 2 cut(s) 452, 456
Bso31I GGTCTC 1 cut(s) 502
Bsp1286I GDGCHC 3 cut(s) 56, 534, 551
Bsp13I TCCGGA 1 cut(s) 524
Bsp143I GATC 4 cut(s) 356, 613, 630, 756
BspACI CCGC 5 cut(s) 372, 611, 621, 891, 904
BspANI GGCC 2 cut(s) 452, 456
BspCNI CTCAG 1 cut(s) 684
BspDI ATCGAT 1 cut(s) 633
BspEI TCCGGA 1 cut(s) 524
BspLI GGNNCC 4 cut(s) 548, 597, 864, 902
BspPI GGATC 1 cut(s) 621
BspTNI GGTCTC 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 452
BsrI ACTGG 4 cut(s) 590, 599, 850, 931
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 4 cut(s) 356, 613, 630, 756
BssNI GRCGYC 1 cut(s) 742
BssT1I CCWWGG 1 cut(s) 654
Bst4CI ACNGT 3 cut(s) 106, 236, 754
Bst6I CTCTTC 3 cut(s) 344, 585, 941
BstACI GRCGYC 1 cut(s) 742
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 137, 454
BstDEI CTNAG 1 cut(s) 692
BstF5I GGATG 3 cut(s) 487, 520, 555
BstKTI GATC 4 cut(s) 359, 616, 633, 759
BstMAI GTCTC 3 cut(s) 346, 502, 743
BstMBI GATC 4 cut(s) 356, 613, 630, 756
BstMCI CGRYCG 1 cut(s) 457
BstMWI GCNNNNNNNGC 1 cut(s) 893
BstSCI CCNGG 2 cut(s) 338, 463
BstSLI GKGCMC 2 cut(s) 56, 534
BstV1I GCAGC 2 cut(s) 271, 905
BstV2I GAAGAC 2 cut(s) 437, 929
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BstZI CGGCCG 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 633
BsuRI GGCC 2 cut(s) 452, 456
BsuTUI ATCGAT 1 cut(s) 633
BtsCI GGATG 3 cut(s) 487, 520, 555
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 5 cut(s) 366, 435, 759, 875, 947
Cac8I GCNNGC 2 cut(s) 137, 454
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 770
ClaI ATCGAT 1 cut(s) 633
CseI GACGC 1 cut(s) 672
Csp6I GTAC 3 cut(s) 624, 824, 910
CviAII CATG 1 cut(s) 872
CviQI GTAC 3 cut(s) 624, 824, 910
DdeI CTNAG 1 cut(s) 692
DpnI GATC 4 cut(s) 358, 615, 632, 758
DpnII GATC 4 cut(s) 356, 613, 630, 756
EaeI YGGCCR 2 cut(s) 450, 454
EagI CGGCCG 1 cut(s) 454
Eam1104I CTCTTC 3 cut(s) 344, 585, 941
EarI CTCTTC 3 cut(s) 344, 585, 941
EclXI CGGCCG 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 551
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 770
Eco52I CGGCCG 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 923
Eco72I CACGTG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 551
ErhI CCWWGG 1 cut(s) 654
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 1 cut(s) 875
FaiI YATR 6 cut(s) 502, 809, 815, 844, 855, 873
FaqI GGGAC 1 cut(s) 675
FatI CATG 1 cut(s) 871
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 2 cut(s) 285, 894
FokI GGATG 3 cut(s) 494, 527, 542
FriOI GRGCYC 1 cut(s) 551
FseI GGCCGGCC 1 cut(s) 456
Fsp4HI GCNGC 2 cut(s) 285, 894
FspBI CTAG 2 cut(s) 177, 617
GluI GCNGC 2 cut(s) 285, 894
GsaI CCCAGC 1 cut(s) 900
HaeIII GGCC 2 cut(s) 452, 456
HapII CCGG 9 cut(s) 339, 453, 457, 465, 479, 505, 512, 525, 773
HgaI GACGC 1 cut(s) 672
Hin1I GRCGYC 1 cut(s) 742
Hin1II CATG 1 cut(s) 875
HinfI GANTC 3 cut(s) 460, 830, 980
HpaII CCGG 9 cut(s) 339, 453, 457, 465, 479, 505, 512, 525, 773
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 4 cut(s) 77, 414, 475, 693
Hpy188III TCNNGA 5 cut(s) 525, 581, 710, 746, 834
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 791
HpyCH4III ACNGT 3 cut(s) 106, 236, 754
HpyCH4IV ACGT 4 cut(s) 22, 262, 742, 921
HpyCH4V TGCA 7 cut(s) 54, 222, 247, 254, 273, 701, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 893
HpyF3I CTNAG 1 cut(s) 692
HpySE526I ACGT 4 cut(s) 22, 262, 742, 921
Hsp92I GRCGYC 1 cut(s) 742
Hsp92II CATG 1 cut(s) 875
Kpn2I TCCGGA 1 cut(s) 524
KroI GCCGGC 1 cut(s) 452
KroNI GCCGGC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 4 cut(s) 356, 613, 630, 756
LmnI GCTCC 3 cut(s) 546, 688, 862
Lsp1109I GCAGC 2 cut(s) 271, 905
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 177, 617
MaeII ACGT 4 cut(s) 22, 262, 742, 921
MaeIII GTNAC 1 cut(s) 922
MalI GATC 4 cut(s) 358, 615, 632, 758
MboI GATC 4 cut(s) 356, 613, 630, 756
MboII GAAGA 7 cut(s) 361, 384, 437, 602, 849, 929, 958
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 3 cut(s) 56, 534, 551
MluCI AATT 6 cut(s) 121, 145, 155, 332, 726, 735
MlyI GAGTC 2 cut(s) 824, 974
MmeI TCCRAC 3 cut(s) 473, 524, 840
MroI TCCGGA 1 cut(s) 524
MroNI GCCGGC 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 2 cut(s) 119, 918
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 9 cut(s) 339, 453, 457, 465, 479, 505, 512, 525, 773
MspR9I CCNGG 2 cut(s) 340, 465
MunI CAATTG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 893
NaeI GCCGGC 1 cut(s) 454
NciI CCSGG 2 cut(s) 340, 465
NdeII GATC 4 cut(s) 356, 613, 630, 756
NgoMIV GCCGGC 1 cut(s) 452
NlaIII CATG 1 cut(s) 875
NlaIV GGNNCC 4 cut(s) 548, 597, 864, 902
PdiI GCCGGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 1 cut(s) 460
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 2 cut(s) 286, 895
PleI GAGTC 2 cut(s) 824, 974
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 2 cut(s) 824, 974
Ppu21I YACGTR 1 cut(s) 23
PspCI CACGTG 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 896
PspN4I GGNNCC 4 cut(s) 548, 597, 864, 902
PspPI GGNCC 1 cut(s) 770
PsrI GAACNNNNNNTAC 2 cut(s) 893, 925
PsuI RGATCY 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 896
RigI GGCCGGCC 1 cut(s) 456
RsaI GTAC 3 cut(s) 625, 825, 911
RsaNI GTAC 3 cut(s) 624, 824, 910
SaqAI TTAA 2 cut(s) 119, 918
SatI GCNGC 2 cut(s) 285, 894
Sau3AI GATC 4 cut(s) 356, 613, 630, 756
Sau96I GGNCC 1 cut(s) 770
SchI GAGTC 2 cut(s) 824, 974
ScrFI CCNGG 2 cut(s) 340, 465
SduI GDGCHC 3 cut(s) 56, 534, 551
SfaNI GCATC 1 cut(s) 709
SinI GGWCC 1 cut(s) 770
SmlI CTYRAG 3 cut(s) 289, 396, 579
SmoI CTYRAG 3 cut(s) 289, 396, 579
Sse9I AATT 6 cut(s) 121, 145, 155, 332, 726, 735
SsiI CCGC 5 cut(s) 372, 611, 621, 891, 904
SspMI CTAG 2 cut(s) 177, 617
StyD4I CCNGG 2 cut(s) 338, 463
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 3 cut(s) 106, 236, 754
TaiI ACGT 4 cut(s) 25, 265, 745, 924
TaqI TCGA 1 cut(s) 633
TasI AATT 6 cut(s) 121, 145, 155, 332, 726, 735
TatI WGTACW 1 cut(s) 909
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 2 cut(s) 119, 918
Tru9I TTAA 2 cut(s) 119, 918
TscAI CASTG 5 cut(s) 366, 435, 759, 882, 947
TseI GCWGC 2 cut(s) 284, 893
TspRI CASTG 5 cut(s) 366, 435, 759, 882, 947
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 4 cut(s) 121, 145, 155, 332
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 2 cut(s) 177, 617
ZraI GACGTC 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.